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Unknown
(387)
Genomics
(204)
Transcriptomics
(19)
Proteomics
(17)
Metabolomics
(8)
Organisms
Coffea arabica
(8)
Homo sapiens
(5)
Mus musculus
(2)
Coffea
(2)
Coffea canephora
(2)
Cronartium quercuum
(1)
Xylella fastidiosa
(1)
Arabidopsis thaliana
(1)
Coffea hybrid cultivar
(1)
Ilex paraguariensis
(1)
Gardenia jasminoides
(1)
Scrophularia nodosa
(1)
Tetrapanax papyrifer
(1)
Impatiens
(1)
Achillea millefolium
(1)
Cornus
(1)
Symphytum
(1)
Digitalis purpurea
(1)
asterids
(1)
Trachelospermum jasminoides
(1)
Vitex agnus-castus
(1)
Angelica archangelica
(1)
Sambucus nigra
(1)
Leonurus cardiaca
(1)
Taraxacum officinale
(1)
Valeriana officinalis
(1)
Codonopsis
(1)
Rehmannia glutinosa
(1)
Lonicera japonica
(1)
Embryophyta
(1)
Organisms
Coffea arabica
(47)
Coffea canephora
(14)
Coffea eugenioides
(5)
Coffea liberica
(3)
Coffea
(3)
Coffea racemosa
(3)
Phymastichus coffea
(2)
food metagenome
(2)
rhizosphere metagenome
(2)
Pseudomonas sp. EMN2
(1)
Ceratocystis colombiana
(1)
Colletotrichum costaricense
(1)
Coffea humblotiana
(1)
Coffea arabica x Coffea canephora
(1)
Cercophora sp. LCS_1
(1)
Xylella fastidiosa subsp. pauca
(1)
Pseudomonas sp. MNR3A
(1)
Pseudomonas sp. MN1F
(1)
Meloidogyne paranaensis
(1)
Coffea brassii
(1)
Hemileia vastatrix HvCat
(1)
Colletotrichum kahawae
(1)
Menisporopsis sp. LCM1078
(1)
Coffea zanguebariae
(1)
Xylella fastidiosa
(1)
root associated fungus metagenome
(1)
leaf metagenome
(1)
phyllosphere metagenome
(1)
Kosakonia cowanii
(1)
Bacteria
(1)
Repository
ENA
(201)
biostudies-arrayexpress
(13)
pride
(12)
geo
(8)
MassIVE
(5)
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(4)
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(3)
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(1)
NODE
(1)
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(4)
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(3)
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(3)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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Mass Spectrometry
(12)
Shotgun proteomics
(7)
Bottom-up proteomics
(3)
Mass spectrometry
(2)
Mass spectrometry assay
(2)
Gel-based experiment
(2)
Data-dependent acquisition
(1)
Instrument Platform
QTOF (ThermoFischer Scientific Instrument model)
(2)
-
(1)
Kunming institute
(1)
QTRAP 6500+
(1)
ACQUITY UPLC H-Class
(1)
GCMS-QP2010SE
(1)
Q Exactive Plus (Thermo Scientific)
(1)
Waters UPLC-TOF-MS
(1)
Direct infusion MS - negative
(1)
Gas Chromatography MS - positive
(1)
Liquid Chromatography MS - alternating - reverse-phase
(1)
Liquid Chromatography MS - alternating - reverse phase
(1)
Liquid Chromatography MS - positive - reverse-phase
(1)
Liquid Chromatography MS - negative - reverse-phase
(1)
Publication Date
2025
(6)
2013
(5)
2011
(5)
2026
(4)
2017
(3)
2010
(3)
2021
(3)
2020
(3)
2022
(3)
2014
(2)
2024
(2)
2006
(1)
2019
(1)
2005
(1)
2023
(1)
2016
(1)
CHEBI ID
CHEBI:21615
(2)
CHEBI:45744
(2)
CHEBI:17521
(2)
CHEBI:17587
(2)
CHEBI:17992
(2)
CHEBI:16709
(2)
CHEBI:43580
(2)
CHEBI:1427
(2)
CHEBI:18357
(2)
CHEBI:37023
(2)
CHEBI:17748
(2)
CHEBI:545959
(2)
CHEBI:17620
(2)
CHEBI:16259
(2)
CHEBI:46195
(2)
CHEBI:16411
(2)
CHEBI:17189
(2)
CHEBI:17405
(2)
CHEBI:48131
(2)
CHEBI:4676
(2)
CHEBI:545687
(2)
CHEBI:17310
(2)
CHEBI:35704
(2)
CHEBI:41865
(2)
CHEBI:16450
(2)
CHEBI:17895
(2)
CHEBI:17295
(2)
CHEBI:16828
(2)
CHEBI:18344
(2)
CHEBI:81382
(1)
Metabolite Name
DIMBOA
(2)
Eupatilin
(2)
Coprine
(2)
N-Acetyl-L-leucine
(2)
Piceid
(2)
Dinoseb
(2)
3-Succinoylpyridine
(2)
2-Hydroxyfelbamate
(2)
Casimiroin
(2)
3-Methylcrotonylglycine
(2)
Nifedipine
(2)
Methohexital
(2)
Tranexamic acid
(2)
Butabarbital
(2)
Arecoline
(2)
Spectinomycin
(2)
N6-Acetyl-L-lysine
(2)
Deoxyuridine
(2)
Prunasin
(2)
Aspartame
(2)
Sinapyl alcohol
(2)
Linamarin
(2)
Pyridoxine
(2)
Taxifolin
(2)
Traumatin
(2)
Sebacic acid
(2)
Traumatic acid
(2)
Tyrosine
(2)
Phenylalanine
(2)
Dodecanedioic acid
(2)
First Public Date
2025
(24)
2024
(21)
2026
(18)
2023
(18)
2022
(18)
2019
(16)
2021
(15)
2014
(13)
2013
(13)
2018
(12)
2015
(11)
2017
(10)
2020
(7)
2016
(4)
2012
(1)
Classification
bacteria
(2)
Study type
Transcription profiling by array
(11)
Unknown experiment type
(1)
Comparative genomic hybridization by array
(1)
Release Date
2025
(50)
2023
(50)
2022
(49)
2021
(33)
2024
(32)
2020
(32)
2019
(24)
2018
(21)
2017
(19)
2015
(14)
2013
(12)
2011
(10)
2016
(10)
2026
(8)
2014
(8)
2010
(6)
2012
(5)
2009
(5)
2008
(3)
2002
(3)
2006
(2)
2007
(2)
2005
(1)
2003
(1)
Lab affiliation
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France
(4)
Centro de Investigacion Cientifica de Yucatan
(1)
Departament of Byossistems, KULeuven, Leuven 3000, Belgium
(1)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences
(1)
Dept. of Agricultural, Food, Environmental and Animal Sciences (DI4A), University of Udine, 33100 Udine, Italy
(1)
IRD, Université Montpellier, UMR DIADE, BP 64501, F-34394 Montpellier, France
(1)
Instituto Superior de Agronomia, Universidade de Lisboa
(1)
Instituto de Ecología, A.C.
(1)
Unidad de Biología Integrativa, Centro de Investigación Científica de Yucatán, Calle 43, No. 130 Colonia Chuburná de Hidalgo, Mérida CP 97200, Yucatán, México.
(1)
Tags
xref:PubMed:11550892
(3)
xref:PubMed:31291469
(2)
pathogen
(2)
pathogen:bacterium
(2)
xref:PubMed:14997299
(1)
xref:PubMed:25717322
(1)
xref:PubMed:29361125
(1)
xref:PubMed:20175515
(1)
xref:PubMed:31790120
(1)
xref:PubMed:34685847
(1)
xref:PubMed:25505842
(1)
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Coffea canephora
Coffea canephora Organism overview
PRJNA80581
|
ENA
Cite
Coffea canephora
Coffea canephora Metagenome
PRJNA526486
|
ENA
Cite
Coffea arabica x Coffea canephora cultivar:Hibrido de Timor
Coffea arabica x Coffea canephora Raw RNAseq reads
PRJNA353233
|
ENA
Cite
Coffea arabica
Coffea arabica root Transcriptome
PRJNA389921
|
ENA
Cite
Coffea arabica
Coffea arabica Genome sequencing
PRJNA1470060
|
ENA
Cite
Coffea liberica
Coffea liberica Raw sequence reads
PRJNA847134
|
ENA
Cite
Coffea arabica
Coffea arabica Raw sequence reads
PRJNA1001613
|
ENA
Cite
Coffea arabica
Coffea arabica Raw sequence reads
PRJNA1001614
|
ENA
Cite
Coffea arabica
Coffea arabica Raw sequence reads
PRJNA1157617
|
ENA
Cite
Proteomic analyses of coffea canephora subjected to various conditions_Part 2
Next-generation proteomics of Coffea canephora to decipher the molecular players involved in stress adaptation.
ORGANISM(S):
Coffea canephora
2022-07-12
|
PXD019831
|
Pride
Proteome dynamics
Proteomics
Stress
Coffea
Plant
Cite
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