Cole P P - OmicsDI

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Unknown (2239)
Transcriptomics (134)
Proteomics (78)
Genomics (26)
Metabolomics (15)
Genomic (3)

Organisms

Homo sapiens (87)
Mus musculus (65)
Mycobacterium tuberculosis H37Rv (8)
Mycobacterium tuberculosis (6)
Saccharomyces cerevisiae (5)
Escherichia coli (4)
Escherichia coli str. K-12 substr. MG1655 (3)
Macaca mulatta (2)
Equus caballus (2)
synthetic construct (2)
Zea mays (2)
Caenorhabditis elegans (2)
Gallus gallus (2)
Neisseria gonorrhoeae (2)
Rattus norvegicus (2)
Danio rerio (2)
Cavia porcellus (2)
Mnemiopsis leidyi (1)
Canis lupus (1)
Amphimedon queenslandica (1)
Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2 (1)
Trypanosoma brucei brucei (1)
Trypanosoma cruzi (1)
unidentified (1)
Macaca fascicularis (1)
Schizosaccharomyces pombe (1)
Pleuronichthys verticalis (1)
Escherichia coli K-12 (1)
Candida albicans (1)
Arabidopsis thaliana (1)

Organisms

Homo sapiens (4)
Escherichia coli str. K-12 substr. MG1655 (1)
Saccharomyces cerevisiae (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (142)
pride (69)
MetaboLights (14)
EGA (10)
ENA (9)
MassIVE (5)
dbGaP (3)
geo (1)
GNPS (1)
PanoramaPublic (1)
PeptideAtlas (1)

Tissue

Cell culture (28)
Epithelial cell (6)
Permanent cell line cell (6)
Testis (5)
Cell line cell (4)
Liver (4)
Lung (4)
Fibroblast (3)
T cell (3)
Heart (2)
Skeletal muscle (2)
Sperm (2)
Urine (1)
Astrocyte of the cerebral cortex (1)
Brain (1)
Cardiac muscle cell (1)
Cardiocyte (1)
Cartilage (1)
Cell suspension culture (1)
Early embryonic cell (1)
Early spermatid (1)
Embryo (1)
Epithelial cell differentiation involved in embryonic placenta development (1)
Fetal cardiomyocyte (1)
Heart ventricle (1)
Intestine (1)
Late spermatid (1)
Lung cell line (1)
Ovary cell line (1)
Primary cell (1)

Disease

Infertility (5)
Pulmonary tuberculosis (4)
Cervix carcinoma (3)
Multiple sclerosis (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Head and neck squamous cell carcinoma (1)
Normal (1)
Amyotrophic lateral sclerosis (1)
Breast cancer (1)
Coronavirus infectious disease (1)
Disease free (1)
Heart failure (1)
Interstitial lung disease (1)
Machado-Joseph disease (1)
Myocardial ischemia (1)
Osteoarthritis (1)
Skeletal muscle atrophy (1)
Systolic heart failure (1)
Tuberculosis (1)
Wilson disease (1)

Technology Type

Mass Spectrometry (69)
Shotgun proteomics (36)
Bottom-up proteomics (18)
Mass spectrometry (11)
Data-dependent acquisition (9)
SWATH MS (6)
Affinity purification coupled with mass spectrometry proteomics (4)
Mass spectrometry assay (2)
Data-independent acquisition (2)
Gel-based experiment (2)
NMR spectroscopy assay (1)
All-ion fragmentation (1)
HDMSE (1)
Mass spectrometry imaging (1)

Instrument Platform

Illumina NovaSeq 6000 (3)
Q Exactive (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 2500 (2)
NextSeq 500 (2)
Orbitrap Fusion (2)
Orbitrap Fusion Lumos (2)
Flow injection analysis MS - negative (2)
Liquid Chromatography MS - negative - reverse phase (2)
Nanodrop N1000 spectrophotometer (1)
GenePix 4000A [Axon Instruments] (1)
NanoDrop (1)
Bellco roll-in incubator (1)
ScanArray Express HT [PerkinElmer] (1)
ScanArray Express HT (1)
Vortex (1)
5975C Series GC/MSD (Agilent) (1)
Flow injection analysis MS - positive (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)
LCMS-IT-TOF (Shimadzu) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid chromatography MS/MS - Negative (1)
Liquid chromatography MS/MS -Positive (1)
Liquid chromatography MS/MS positive (1)
Nuclear Magnetic Resonance (NMR) - - - Bruker (1)
Nuclear Magnetic Resonance (NMR) - - - Varian (1)

Publication Date

2021 (24)
2014 (21)
2016 (20)
2015 (20)
2010 (17)
2012 (16)
2013 (15)
2025 (14)
2026 (13)
2024 (10)
2011 (9)
2018 (8)
2017 (7)
2023 (6)
2022 (6)
2009 (6)
2019 (5)
2008 (5)
2007 (4)
2005 (3)
2006 (2)
2020 (2)

UNIPROT ID/AC

A0A075B6P5 (1)
A0A087WT59 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WWA5 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087WZE9 (1)
A0A087X130 (1)
A0A087X1V9 (1)
A0A087X232 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0B4J1V0 (1)
A0M8Q6 (1)
A0N5G4 (1)
A0N5G5 (1)
A0N7I9 (1)
A0N7J6 (1)
A2IPI2 (1)
A2IPI4 (1)
A2IPI5 (1)
A2J423 (1)
A2JA19 (1)
A2N2F4 (1)
A2NB46 (1)
A2NI60 (1)
A2NKM6 (1)
A2NUT2 (1)
A2NXP9 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:16335 (6)
CHEBI:15428 (5)
CHEBI:17596 (5)
CHEBI:27897 (5)
CHEBI:15676 (4)
CHEBI:15741 (4)
CHEBI:16414 (4)
CHEBI:16737 (4)
CHEBI:16919 (4)
CHEBI:17191 (4)
CHEBI:17203 (4)
CHEBI:17368 (4)
CHEBI:17754 (4)
CHEBI:17821 (4)
CHEBI:17992 (4)
CHEBI:18186 (4)
CHEBI:25017 (4)
CHEBI:28044 (4)
CHEBI:28683 (4)
CHEBI:30769 (4)
CHEBI:32816 (4)
CHEBI:78320 (4)
CHEBI:15318 (3)
CHEBI:15354 (3)
CHEBI:15603 (3)
CHEBI:15721 (3)
CHEBI:15724 (3)
CHEBI:15846 (3)
CHEBI:15971 (3)
CHEBI:16027 (3)

Metabolite Name

Tyrosine (4)
2'-deoxycytidine (3)
Adenine (3)
Adenosine (3)
Arginine (3)
Guanosine (3)
Isoleucine (3)
Kynurenine (3)
Leucine (3)
Phenylalanine (3)
Tryptophan (3)
Tryptophan (3)
(6R)-5-6-7-8-tetrahydrobiopterin (2)
2-hydroxyglutarate (2)
4-Methyl-5-Thiazoleethanol (2)
4-aminobenzoic acid (2)
5'-methylthioadenosine (2)
5-hydroxy-L-tryptophan (2)
AMP (2)
Adenosine (2)
Choline (2)
Creatine (2)
D-glucose (2)
Glycine (2)
Histamine (2)
Inosine (2)
Kynurenine (2)
Leucine (2)
Mannitol (2)
N-acetylserotonin (2)

First Public Date

2014 (3)
2025 (2)
2024 (2)
2023 (1)
2017 (1)

Classification

bacteria (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
Heavy form (1)
Heavy form - site K (1)
Medium form - site K (1)
Medium form - site N-term (1)

Study type

Transcription profiling by array (83)
RNA-seq of coding RNA (30)
ChIP-seq (7)
ChIP-chip by array (5)
ChIP-chip by tiling array (3)
Transcription profiling by tiling array (2)
Comparative genomic hybridization by array (2)
Proteomic profiling by array (2)
RNA-seq of non coding RNA (2)
Human - One-color microarray (1)
Transcription profiling by RT-PCR (1)
Other (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (230)
2021 (219)
2023 (217)
2025 (207)
2024 (195)
2020 (150)
2019 (137)
2018 (124)
2015 (121)
2016 (116)
2014 (113)
2017 (110)
2013 (85)
2011 (78)
2012 (72)
2010 (65)
2009 (39)
2008 (29)
2026 (25)
2007 (18)
2006 (9)
2005 (8)
2003 (5)
1999 (3)
2004 (2)
2002 (2)
2001 (1)
2000 (1)

Lab affiliation

Bioplatforms Australia (7)
Lomonosov Moscow State University (4)
Global Health Institute, EPFL, Lausanne, Switzerland (3)
Centre for Gene Regulation and Expression, Sir James Black Centre, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH. UK. (2)
EDyP (2)
University of Colorado Skaggs School of Pharmacy (2)
Adelaide Proteomics Centre (1)
Associate Professor, Stem Cells and Regenerative Medicine Centre, Yenepoya Research Centre, Yenepoya (Deemed to be University), Deralakatte, Mangalore, Karnataka (State),India (C) (1)
Bio-Organic Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India (1)
Bioplatforms Australia (project manager) (1)
Center for Regenerative Medicine, Boston University and Boston Medical Center, Boston, MA 02118, USA The Pulmonary Center and Department of Medicine, Boston University School of Medicine, Boston, MA 02118, USA (1)
Claudia Fecher-Trost Experimental and Clinical Pharmacology and Toxicology, Center for Molecular Signaling (PZMS), Saarland University, Buildings 46, D-66421 Homburg, Germany (1)
Dana-Farber Cancer Institute Harvard Medical School Broad Institute Howard Hughes Medical Institute (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biological Chemistry The Johns Hopkins School of Medicine Baltimore, MD, 21205, USA (1)
Department of Biomedical Sciences, Faculty of Medicine and Health Sciences, Macquarie University, North Ryde, NSW, 2109, Australia (1)
Department of Biomedical Sciences, Macquarie University, North Ryde, NSW, 2109, Australia (1)
Department of Biotechnology, Graduate School of Engineering, The University of Osaka, Japan (1)
Department of Chemistry and Biochemistry, Texas Tech University, Texas, USA (1)
Department of Medical Genetics Johns Hopkins School of Medicine (1)
Department of Pharmaceutical Sciences Skaggs School of Pharmacy at the University of Colorado - Anschutz medical Cammpus. (1)
Department of Plant Science and Technology, Chung-Ang University, Anseong, Republic of Korea (1)
Departments of Neurology and Psychiatry, Johns Hopkins University School of Medicine, Baltimore, MD, USA, 21287; (1)
Dept. of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Switzerland (1)
Division of Cardiology Johns Hopkins University School of Medicine Ross Research Building, Room 847 720 Rutland Avenue Baltimore, MD 21205 Phone: 410-614-0027 Email: dbrianfoster@jhmi.edu Web: http://web1.johnshopkins.edu/fosterlab (1)
Division of Cardiology, Johns Hopkins University School of Medicine, Baltimore, MD 20205, USA (1)
Duke Department of Cell Biology, Durham, NC (1)
Global Health Institute, EPFL, Lausanne, Switzerland (lab head) (1)
Histone Modifications Group Zentrallabor für Proteinanalytik BioMedical Center (Faculty of Medicine) Ludwig-Maximilians-University of Munich Großhadernerstr. 9 82152 Planegg-Martinsried GERMANY (1)
Institut Pasteur, Paris, France (1)

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P. putida predation sensitive vs predation survivor

Comparison of P. putida type strain crude extract with P. putida type strain phenotype evading myxobacterium C. ferrugineus predation.

ORGANISM(S): Pseudomonas Putida (ncbitaxon:303)

2021-01-21 | MSV000086742 | MassIVE

ENPP1 Mutation Causes Recessive Cole Disease by Altering Melanogenesis

Propose: We used next-generation RNA sequencing (RNA-seq) to characterize the transcriptional changes in primary human melanocytes during recessive Cole disease. Our patient carried missense mutation in the ENPP1 gene (c.358T>C; p.C120R). RNA-seq was performed using mRNA extracted from primary hypo-...

ORGANISM(S): Homo sapiens

2017-04-30 | GSE93657 | GEO

GNPS - P. putida predation sensitive vs predation survivor

Comparison of P. putida type strain crude extract with P. putida type strain phenotype evading myxobacterium C. ferrugineus predation.

ORGANISM(S): Pseudomonas Putida (ncbitaxon:303)

2021-01-21 | MSV000086742 | GNPS

Cole-Carpenter syndrome is caused by a heterozygous missense mutation in P4HB.

Not available

S-EPMC4375435 | biostudies-literature

P-selectin Expression Tracks Cerebral Atrophy in Mexican-Americans.

Not available

S-EPMC3340599 | biostudies-literature