Collagenase-free protocol

Show results for

Transcriptomics (246)
Genomics (29)
Proteomics (16)
Unknown (11)
Metabolomics (1)

Organisms

Homo sapiens (133)
Mus musculus (94)
Aerococcus urinae NBRC 15544 = CCUG 36881 (16)
Allexis (16)
Canis lupus familiaris (16)
Carya cathayensis (16)
Clostridioides difficile 630 (16)
Cyanophora paradoxa (16)
Ensifer adhaerens (16)
Enterococcus faecalis (16)
Globicatella sanguinis (16)
Histomonas meleagridis (16)
Human immunodeficiency virus 1 (16)
Listeria monocytogenes (16)
Marchantia polymorpha (16)
Methylohalobius crimeensis 10Ki (16)
Mus musculus (16)
Rattus norvegicus (14)
Danio rerio (4)
Sus scrofa (3)
Macaca mulatta (2)
Xenopus laevis (2)
Salmo salar (2)
Bos taurus (2)
Osmerus mordax (1)
Capra hircus (1)
Schmidtea mediterranea (1)
Oryctolagus cuniculus (1)
Canis lupus familiaris (1)
Gallus gallus (1)

Organisms

Mus musculus (7)
Homo sapiens (4)
Rattus norvegicus (3)

Repository

biostudies-arrayexpress (262)
pride (16)
ENA (15)
geo (1)
MetaboLights (1)

Tissue

Cell culture (2)
Epithelial cell (2)
Fibroblast (2)
Kidney (2)
Articular cartilage (1)
Calvarial osteoblast (1)
Carotid artery segment (1)
Carotid atherosclerotic plaque (1)
Chondrocyte (1)
Colon (1)
Endometrial glandular epithelium (1)
Extracellular vesicle (1)
Fat cell (1)
Gingival fibroblast (1)
Islet of Langerhans (1)
Long bone (1)
Macrophage (1)
Mandible (1)
Pancreatic islet (1)
Skin (1)
Tibia (1)

Disease

Normal (4)
Glioblastoma multiforme (3)
Endometrioid carcinoma (1)
Thompson grade 3 (1)
Rheumatoid arthritis (1)
Unstable atherosclerotic plaque region (1)
Atherosclerosis (1)
Disease free (1)
Endometrial cancer (1)
Osteoarthritis (1)
Skin melanoma (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (9)
Bottom-up proteomics (3)
Data-independent acquisition (2)
Gel-based experiment (2)
Mass spectrometry (1)
Data-dependent acquisition (1)
DiaPASEF (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (14)
NextSeq 500 (8)
Illumina HiSeq 4000 (5)
Illumina HiSeq 2500 (4)
Illumina HiSeq 2000 (3)
Manual (2)
10x Genomics Chromium (2)
NextSeq 2000 (2)
NextSeq 550 (2)
NaN (1)
10x Genomics Chromium controller; Agilent 2100 Bioanalyzer and Qubit fluorometer (Thermo Fisher) for QC (1)
10x Genomics Chromium controller (GEM generation on Chromium Next GEM Chip G) (1)
BD FACSAria cell sorter (viable-cell sorting); Countess III cell counter (Thermo Fisher; viability check) (1)
IEO HPC (1)
Qubit instrument, DNA HS kit (1)
High Sensitivity DNA kit (1)
BioRad SureCell (1)
Axon Instruments GenePix 4000B scanner (1)
Agilent Microarray Scanner G2505c (1)
IScan Illumina (1)
Unspecified (1)
BAS-1800 [FUJIFILM] (1)
BAS-5000 [FUJIFILM] (1)
Illumina Genome Analyzer II (1)
None (1)
HiSeq X Ten (1)
GC-(triple quadrupole)MS, TQ8040, Shimadzu (1)

Publication Date

2014 (32)
2012 (29)
2011 (26)
2015 (25)
2013 (25)
2010 (25)
2016 (16)
2009 (16)
2025 (11)
2022 (10)
2008 (8)
2026 (7)
2018 (7)
2020 (6)
2019 (6)
2007 (6)
2024 (5)
2023 (5)
2021 (5)
2017 (4)
2006 (4)
2004 (2)

CHEBI ID

CHEBI:46905 (1)
CHEBI:18095 (1)
CHEBI:32796 (1)
CHEBI:15356 (1)
CHEBI:28757 (1)
CHEBI:17234 (1)
CHEBI:16708 (1)
CHEBI:17754 (1)
CHEBI:16610 (1)
CHEBI:18297 (1)
CHEBI:422 (1)
CHEBI:16857 (1)
CHEBI:17794 (1)
CHEBI:15891 (1)
CHEBI:27997 (1)
CHEBI:18183 (1)
CHEBI:28875 (1)
CHEBI:16958 (1)
CHEBI:28842 (1)
CHEBI:16196 (1)
CHEBI:17148 (1)
CHEBI:17115 (1)
CHEBI:15971 (1)
CHEBI:18050 (1)
CHEBI:16668 (1)
CHEBI:16113 (1)
CHEBI:17568 (1)
CHEBI:15741 (1)
CHEBI:32816 (1)
CHEBI:44897 (1)

Metabolite Name

Phosphoenolpyruvic acid (1)
Elaidic acid (1)
(R)-2-hydroxyglutaric acid (1)
(S)-malic acid (1)
Octadecanoic acid (1)
Trans-4-hydroxy-L-proline (1)
(R)-pantothenic acid (1)
Pantothenic acid (1)
Sn-glycerol 3-phosphate (1)
Cholesterol (1)
Cadaverine (1)
Hexadecanoic acid (1)
Oleic acid (1)
Pyruvic acid (1)
5-oxo-L-proline (1)
L-ornithine (1)
N-acetyl-L-aspartic acid (1)
(S)-lactic acid (1)
L-leucine (1)
L-isoleucine (1)
Adenosine 5'-monophosphate (1)
Taurine (1)
Hypotaurine (1)
Cysteine (1)
Adenine (1)
Urea (1)
Fructose (1)
Glucose (1)
L-alanine (1)
Tetradecanoic acid (1)

First Public Date

2026 (5)
2025 (2)
2023 (2)
2015 (2)
2014 (2)
2022 (1)
2021 (1)

Study type

Transcription profiling by array (170)
RNA-seq of coding RNA (34)
RNA-seq of coding RNA from single cells (18)
ChIP-seq (11)
Methylation profiling by array (6)
ChIP-chip by array (3)
Methylation profiling by high throughput sequencing (3)
Human - One-color microarray (2)
Cell line - High-throughput sequencing (2)
Comparative genomic hybridization by array (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Human - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)

Release Date

2014 (32)
2012 (29)
2011 (26)
2015 (25)
2013 (25)
2010 (25)
2016 (18)
2009 (16)
2025 (8)
2022 (8)
2019 (8)
2008 (8)
2020 (6)
2007 (6)
2026 (5)
2023 (5)
2021 (5)
2018 (5)
2017 (4)
2006 (4)
2024 (3)
2004 (2)

Lab affiliation

1) Department Preclinical Development and Validation, Fraunhofer Institute for Cell Therapy and Immunology IZI, Leipzig, Germany; 2) Institute for Bioanalysis, University of Applied Science Coburg, Coburg, Germany (1)
Chair Quantitative Proteomics Director Proteome Center Tuebingen Interfaculty Institute for Cell Biology University of Tuebingen Auf der Morgenstelle 15 72076 Tuebingen Germany (1)
Department of Biotechnology St Aloysius (Deemed to be University) Mangalore – 575 003, Karnataka, India. (1)
Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand (1)
Department of Chemistry, Faculty of Science, Chulalongkorn University, Thailand (1)
Department of Innovative Technologies in Medicine & Dentistry, University of Chieti, Italy (1)
Epithelial Systems Biology Laboratory National Heart Lung and Blood Institute National Institutes of Health (1)
Epithelial Systems Biology Laboratory, National Heart, Lung, and Blood Institute, National Institutes of Health (1)
Erciyes University Genom and Stem Cell Center (1)
Head Proteomics Core Facility Medical University of Vienna Clinical Department of Laboratory Medicine (1)
Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, France Infrastructure Nationale de Protéomique, ProFI, FR 2048, Toulouse, France (1)
Institute of Neuropathology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
John van Geest Centre, Nottingham Trent University (1)
MSAP UAR 3290 CNRS (1)
Molecular Medicine and Pathology, The University of Auckland, NZ (1)
University Health Network, Division of Vascular Surgery, Toronto General Hospital Research Institute, Division of Biomedical Research; Department of Surgery, University of Toronto; Toronto, Canada (1)

Previous page
1 / 31
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 31
Next page

Sort by:

Relevance

Page size

Data on isolating mesenchymal stromal cells from human adipose tissue using a collagenase-free method.

Not available

S-EPMC4760183 | biostudies-literature

Wide-genome analysis of hepatocytes isolated from male and female rats treated with glucocorticoid.

Glucocorticoids are widely used therapeutically to suppress inflammatory/immune responses and most of their effects are produced either by altering transcription of specific genes directly, or by altering the expression of transcription factors that subsequently alter the expression of downstream ge...

ORGANISM(S): Rattus norvegicus

2010-10-30 | E-GEOD-24255 | biostudies-arrayexpress

Gradient-Free Isolation of Murine Pancreatic Islets for Single-Cell RNA Sequencing

Pancreatic islet isolation for single-cell RNA sequencing (scRNA-seq) requires extensive enzymatic and mechanical processing that may affect cell recovery and transcriptional state. We evaluated a practical gradient-free workflow for murine pancreatic islets from diabetic BKS.Cg-Dock7^m +/+ Lepr^db/...

ORGANISM(S): Mus musculus

2026-09-30 | GSE347182 | GEO

A Novel Two-Step Proteome Extraction Protocol for Bone Tissue: Enhancing Low-Abundance Protein Detection and Multi-Omics Compatibility

Bone metabolism is a dynamic process involving osteoblasts, osteoclasts, and osteocytes, which maintain skeletal integrity through continuous remodelling. Disruptions in this homeostasis – caused by mineral or hormonal imbalances, systemic metabolic or inflammatory conditions, or genetic predisposit...

ORGANISM(S): Rattus norvegicus (Rat)

2025-08-13 | PXD056459 | Pride

Genome wide analysis of Visceral adipose tissue CD14+ cells from Obese and obese diabetic subjects

Identification of the inflammatory signature in visceral adipose tissue CD14+ cells (adipose tissue macrophage) Total RNA obtained from CD14+ cells (Immunoselcted cells from stromal adipose tissue cells) Adipocytes and cells of the stroma vascular fraction (SVF) were obtained by collagenase digestio...

ORGANISM(S): Homo sapiens

2014-01-24 | E-GEOD-54350 | biostudies-arrayexpress

Genome wide analysis of Visceral adipose tissue CD14+ cells from obese subjects

ORGANISM(S): Homo sapiens

2015-02-11 | E-GEOD-65802 | biostudies-arrayexpress

Efficient enzyme-free isolation of brain-derived extracellular vesicles

Extracellular vesicles (EVs) have gained significant attention as potential diagnostic and therapeutic tools due to their role in intercellular communication and their ability to encapsulate various biomolecules. However, the isolation of EVs from tissue remains challenging, often requiring enzymati...

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human)

2024-11-07 | PXD045737 | Pride

Collagenase-free protocol Prion protein Brain-derived evs Bdevs

Long-term survival of cultivated oral mucosal epithelial cells in human cornea: generating cell sheets using an animal product-free culture protocol.

Not available

S-EPMC8496076 | biostudies-literature

Oral tongue cancer gene expression profiling: Identification of novel potential prognosticators

Background: The present study is aimed at identifying potential candidate genes as prognostic markers in human oral tongue squamous cell carcinoma (SCC) by large scale gene expression profiling. Methods: The gene expression profile of patients (n=37) with oral tongue SCC were analyzed using Affyme...

ORGANISM(S): Homo sapiens

2008-11-14 | E-GEOD-13601 | biostudies-arrayexpress

Comprehensive gene expression analysis of human embryonic stem cell during differentiation into neural cells

In this research we have done a comprehensive transcripteome analysis of hESC differentiation at three different stages: early neural differentiation, neural ectoderm, and mature neurons. We detected and validated time-dependent gene expression patterns and represented that the gene expression patte...

ORGANISM(S): Homo sapiens

2011-04-15 | E-GEOD-28633 | biostudies-arrayexpress

Previous page
1 / 31
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 31
Next page

Sort by:

Relevance

Page size

306 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

First Public Date

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets