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TranscriptomicsChromatin immunoprecipitation of Arabidopsis seedlings to identify targets of TERMINAL FLOWER 2/LIKE HETEROCHROMATIN PROTEIN 1 and H3K27me3, H3K9me2 and H3K9me3
Chromatin immunoprecipitation and hybridization to a chromosome-wide DNA tiling array (ChIP-chip)was performed to identify the targets of the chromatin protein TERMINAL FLOWER 2/LIKE HETEROCHROMATIN PROTEIN 1. Epigenomic profiling was also carried out for three histone H3 modifications: H3K27me3, H3...
ORGANISM(S): Arabidopsis thaliana 
2007-04-17 | E-MEXP-951 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Arabidopsis nrpd1a-4_nrpd1b-11 double mutant and in the wild type after immunprecipitation of H3K4me2
Chromatin immunoprecipitation and hybridization to a chromosome-wide DNA tiling array (ChIP-chip)was performed to compare the distribution of H3K4me2 in nrpd1a-4_nrpd1b-11 double mutant and in the wild type. Experiments were done using two independent biological replicates.

ORGANISM(S): Arabidopsis thaliana 
2010-06-01 | E-MEXP-1732 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Arabidopsis to perform a chromosome-wide comparison of H3K9me2 distribution between nrpd1a-4_nrpd1b-11 and wild type plants
Chromatin immunoprecipitation and hybridization to a chromosome-wide DNA tiling array (ChIP-chip)was performed to compare the distribution pattern of H3K9me2 between nrpd1a-4_nrpd1b-11 and wild type. Experiments were done using two independent biological replicates.
ORGANISM(S): Arabidopsis thaliana 
2009-07-24 | E-MEXP-1727 | biostudies-arrayexpress
Transcriptomicscgh_colvsc24_wg-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions
a2e_heterosis - cgh_colvsc24_wg - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - Comparative genome hybridization between Arabidopsis thaliana accessions Col-0 and C24. cgh; tech...
ORGANISM(S): Arabidopsis thaliana 
2011-05-17 | E-GEOD-24831 | biostudies-arrayexpress
Transcriptomicscgh_colvscvi_wg-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions
a2e_heterosis - cgh_colvscvi_wg - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - Comparative genome hybridization between Arabidopsis thaliana accessions Col-0 and CVi. 2 dye-swa...
ORGANISM(S): Arabidopsis thaliana 
2011-05-17 | E-GEOD-24835 | biostudies-arrayexpress
TranscriptomicsExpression profiling in silencing suppressor plants or in mirna mutants-Transcriptional and post-transcriptional changes in Arabidopsis plants that constitutively express suppressors of RNA silencing
gen107_ptgs - gene profiling in silencing suppressor plants or in mirna mutants - What are the genes that are differentially regulated in various tissues derived from silencing suppressor plants or miRNA mutants? - HcPro, P15, P19, CHS-RNAi (control), were grown on MS solid medium, and tissues were ...
ORGANISM(S): Arabidopsis thaliana 
2011-08-22 | E-GEOD-26739 | biostudies-arrayexpress
TranscriptomicsMethylome analysis of Arabidopsis thaliana Col-0 primary root
DNA methylation profiling in Col-0 wild type primary root 2 biological replicates in dye-swap - MeDIP-chip
ORGANISM(S): Arabidopsis thaliana 
2012-12-07 | E-GEOD-36750 | biostudies-arrayexpress
TranscriptomicsGenome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant (h3k4me3_fie_col_seedlings_db)
a2e_fie - h3k4me3_fie_col_seedlings_db - Epigenomic mapping in fie - Genome-wide epigenomic mapping Keywords: chip-chip 4 dye-swap - CATMA arrays
ORGANISM(S): Arabidopsis thaliana 
2011-03-28 | E-GEOD-24161 | biostudies-arrayexpress
TranscriptomicsGenome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant (h3k4me3_wt_col_seedlings_db)
a2e_fie - h3k4me3_wt_col_seedlings_db - Epigenomic mapping in fie - Genome-wide epigenomic mapping Keywords: chip-chip 4 dye-swap - CATMA arrays
ORGANISM(S): Arabidopsis thaliana 
2011-03-28 | E-GEOD-24162 | biostudies-arrayexpress
TranscriptomicsGenome-wide profiling of H3K4me3 and H3K27me3 enrichment and mRNA levels in young leaves of Arabidopsis thaliana
Chromatin and RNA were extracted from young A. thaliana Col-0 rosette leaves. Chromatin immunoprecipitation experiments were performed using commercially available antibodies and analyzed by Illumina sequencing (ChIP-seq). Transcriptome data were generated by RNA-seq. ChIP-seq analysis of H3K4me3 an...
ORGANISM(S): Arabidopsis thaliana 
2014-01-27 | E-GEOD-50636 | biostudies-arrayexpress
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