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Transcriptomics
(247)
Unknown
(234)
Genomics
(67)
Metabolomics
(46)
Proteomics
(31)
Other
(5)
Organisms
Medicago truncatula
(27)
Mus musculus
(27)
Homo sapiens
(21)
Sinorhizobium meliloti
(19)
Candida albicans
(19)
Bradyrhizobium japonicum
(7)
Rhizobium leguminosarum
(7)
Arabidopsis thaliana
(5)
Anemonia viridis
(4)
Acropora millepora
(4)
Glycine max
(4)
Ascaris suum
(3)
Spodoptera frugiperda
(3)
Zea mays
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Mycobacterium tuberculosis
(3)
Oryza sativa Japonica Group
(3)
Drosophila melanogaster
(3)
Mesorhizobium huakuii 7653R
(2)
Phaseolus vulgaris
(2)
Casuarina glauca
(2)
Rhizobium etli CFN 42
(2)
Vigna unguiculata
(2)
Aliivibrio salmonicida LFI1238
(2)
Aspergillus niger
(2)
Macaca mulatta
(2)
Trypanosoma brucei
(2)
Salmo salar
(2)
Bos taurus
(2)
Solanum lycopersicum
(2)
Triticum aestivum
(2)
Organisms
Candida albicans
(11)
Mus musculus
(6)
Homo sapiens
(3)
Campylobacter jejuni
(2)
Serratia marcescens
(2)
Neisseria musculi
(1)
Arxiozyma heterogenica
(1)
Faecalibacterium prausnitzii
(1)
Staphylococcus epidermidis
(1)
Escherichia coli
(1)
activated sludge metagenome
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Repository
biostudies-arrayexpress
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ENA
(62)
MetaboLights
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geo
(29)
MassIVE
(15)
PAXDB
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iProX
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jPOST
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pride
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GPMDB
(2)
EGA
(1)
Tissue
Cell culture
(1)
Disease
Normal
(2)
Not Available
(2)
Technology Type
Mass spectrometry
(38)
Mass spectrometry assay
(6)
NMR spectroscopy
(3)
Mass Spectrometry
(3)
Shotgun proteomics
(2)
Bottom-up proteomics
(1)
Instrument Platform
Illumina HiSeq 2000
(7)
Illumina Genome Analyzer IIx
(4)
Axon- GenePix4000B
(3)
Illumina HiSeq 2500
(2)
NextSeq 500
(2)
Instrument
(2)
LTQ Orbitrap XL
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Orbitrap Eclipse
(2)
RNeasy Plant Mini Kit (Qiagen)
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GenePix 4200AL
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Agilent scanner
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Tecan HS400Pro
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Table centrifuge
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Illumina HiScanSQ
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ScanArray 4000 [PerkinElmer]
(1)
Illumina Genome Analyzer
(1)
BAS-1800 [FUJIFILM]
(1)
G2505A DNA microarray scanner [Agilent]
(1)
Scanning hardware
(1)
MinION
(1)
Illumina MiSeq
(1)
Illumina NovaSeq 6000
(1)
6520A Quadrupole Time-of-Flight LC/MS
(1)
AmaZon X
(1)
Autoflex II
(1)
Compact II
(1)
Impact II
(1)
LTQ Orbitrap Elite
(1)
LTQ Orbitrap Velos
(1)
LTQ Velos ETD
(1)
Publication Date
2011
(42)
2010
(32)
2012
(26)
2013
(24)
2014
(21)
2016
(20)
2008
(19)
2019
(16)
2015
(15)
2018
(14)
2025
(13)
2017
(13)
2007
(11)
2022
(11)
2024
(9)
2020
(9)
2023
(8)
2006
(7)
2009
(6)
2021
(6)
2026
(4)
2005
(3)
2004
(2)
UNIPROT ID/AC
3880.AES58538
(6)
3880.AES58539
(6)
3880.AES58557
(6)
3880.AES58577
(6)
3880.AES58595
(6)
3880.AES58596
(6)
3880.AES58598
(6)
3880.AES58611
(6)
3880.AES58637
(6)
3880.AES58673
(6)
3880.AES58697
(6)
3880.AES58766
(6)
3880.AES58788
(6)
3880.AES58833
(6)
3880.AES58880
(6)
3880.AES58897
(6)
3880.AES58900
(6)
3880.AES58960
(6)
3880.AES58990
(6)
3880.AES59003
(6)
3880.AES59180
(6)
3880.AES59185
(6)
3880.AES59286
(6)
3880.AES59334
(6)
3880.AES59339
(6)
3880.AES59397
(6)
3880.AES59531
(6)
3880.AES59549
(6)
3880.AES59555
(6)
3880.AES59608
(6)
CHEBI ID
CHEBI:15428
(13)
CHEBI:17822
(12)
CHEBI:26986
(11)
CHEBI:27266
(11)
CHEBI:18237
(10)
CHEBI:28300
(10)
CHEBI:28044
(10)
CHEBI:26271
(9)
CHEBI:22660
(9)
CHEBI:22653
(9)
CHEBI:25017
(9)
CHEBI:17148
(9)
CHEBI:16449
(9)
CHEBI:18186
(8)
CHEBI:24898
(8)
CHEBI:16610
(8)
CHEBI:15741
(8)
CHEBI:15603
(8)
CHEBI:25094
(7)
CHEBI:16811
(7)
CHEBI:18257
(7)
CHEBI:17929
(7)
CHEBI:15891
(7)
CHEBI:29016
(7)
CHEBI:16737
(7)
CHEBI:27897
(7)
CHEBI:17191
(7)
CHEBI:15756
(7)
CHEBI:18133
(6)
CHEBI:28260
(6)
Metabolite Name
Taurine
(7)
Adenine
(6)
Thymidine
(6)
L-Valine
(6)
Rishitin
(5)
4-Hydroxycinnamic acid
(5)
Succinic acid
(5)
Citric acid
(5)
Histidylleucine
(4)
Amastatin
(4)
Glycine
(4)
Cellobiose
(4)
Spermine
(4)
Citrulline
(4)
Neolinustatin
(4)
Putrescine
(4)
Plumieride
(4)
Serotonin
(4)
4-Hydroxybenzoic acid
(4)
Xanthosine
(4)
10-Hydroxydecanoic acid
(4)
Sebacic acid
(4)
Spermidine
(4)
Vindoline
(4)
L-Glutamine
(4)
Glucose
(4)
Sedoheptulose
(4)
Galactinol
(4)
Creatinine
(4)
Total DMA
(3)
First Public Date
2024
(11)
2022
(7)
2019
(7)
2014
(7)
2023
(6)
2021
(4)
2020
(4)
2018
(4)
2025
(3)
2016
(3)
2026
(2)
2015
(2)
2017
(1)
2013
(1)
Classification
fungi
(11)
bacteria
(5)
Study type
Transcription profiling by array
(157)
RNA-seq of coding RNA
(39)
Unknown experiment type
(8)
RNA-seq of non coding RNA
(7)
Transcription profiling by RT-PCR
(3)
Transcription profiling by tiling array
(2)
ChIP-chip by tiling array
(1)
Animal - High-throughput sequencing
(1)
ChIP-chip by array
(1)
Comparative genomic hybridization by array
(1)
RIP-seq
(1)
ChIP-seq
(1)
DNA-seq
(1)
Methylation profiling by high throughput sequencing
(1)
Release Date
2011
(45)
2010
(37)
2021
(33)
2012
(32)
2015
(28)
2016
(26)
2014
(26)
2013
(26)
2024
(23)
2023
(23)
2019
(22)
2008
(22)
2022
(19)
2025
(18)
2017
(16)
2018
(14)
2020
(12)
2007
(11)
2009
(9)
2006
(9)
2004
(4)
2005
(3)
2026
(1)
Lab affiliation
Department of Restorative Dentistry, School of Dentistry, Oregon Health and Science University
(1)
EDyP
(1)
Shanghai Institute of Infectious Disease and Biosecurity, State Key Laboratory of Genetics and Development of Complex Phenotypes, School of Life Sciences, Department of Laboratory Medicine, Department of Infectious Diseases, Huashan Hospital, Fudan University, Shanghai, China College of Pharmaceutical Sciences, Southwest University, Chongqing, China
(1)
Tags
pathogen
(16)
pathogen:fungus
(11)
pathogen:bacterium
(5)
xref:PubMed:36044899
(4)
xref:PubMed:23728172
(3)
xref:PubMed:21843869
(3)
xref:PubMed:39190452
(2)
xref:PubMed:30819965
(2)
xref:PubMed:35580146
(1)
xref:PubMed:30824263
(1)
xref:PubMed:28487428
(1)
xref:PubMed:29403478
(1)
xref:PubMed:31809527
(1)
xref:PubMed:31562173
(1)
xref:PubMed:3773763
(1)
xref:PubMed:37737633
(1)
xref:PubMed:37535745
(1)
xref:PubMed:25617770
(1)
xref:PubMed:30870623
(1)
xref:PubMed:30100182
(1)
xref:PubMed:37369264
(1)
xref:PubMed:23892606
(1)
xref:PubMed:29321512
(1)
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A lipase gene family promotes gut commensalism of an opportunistic fungal pathogen
A lipase gene family promotes gut commensalism of an opportunistic fungal pathogen
PRJEB75939
|
ENA
Cite
Competitive fungal commensalism mitigates candidiasis pathology.
Not available
S-EPMC10949073
|
biostudies-literature
Cite
Evolutionary Transition from Pathogenicity to Commensalism: Global Regulator Mutations Mediate Fitness Gains through Virulence Attenuation.
Not available
S-EPMC4651237
|
biostudies-literature
Cite
Candida albicans exploits N-acetylglucosamine as a gut signal to establish the balance between commensalism and pathogenesis.
Not available
S-EPMC10293180
|
biostudies-literature
Cite
Peptide YY: a Paneth cell antimicrobial peptide that maintains Candida gut commensalism.
Peptide YY: a Paneth cell antimicrobial peptide that maintains Candida gut commensalism.
PRJNA954888
|
ENA
Cite
Recording of DNA-binding events reveals the importance of a repurposed Candida albicans regulatory network for gut commensalism.
Not available
S-EPMC8216204
|
biostudies-literature
Cite
Tissue-resident memory Th17 cells maintain stable fungal commensalism in the oral mucosa.
Not available
S-EPMC7946631
|
biostudies-literature
Cite
Candida albicans Morphogenesis Programs Control the Balance between Gut Commensalism and Invasive Infection.
Not available
S-EPMC6581065
|
biostudies-literature
Cite
Dynamics of microbial competition, commensalism, and cooperation and its implications for coculture and microbiome engineering.
Not available
S-EPMC7821011
|
biostudies-literature
Cite
Candida albicans commensalism in the oral mucosa is favoured by limited virulence and metabolic adaptation.
Not available
S-EPMC9041809
|
biostudies-literature
Cite
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