Comparative proteomics led

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Unknown (101)
Proteomics (99)
Transcriptomics (6)
Genomics (6)
Metabolomics (3)

Organisms

Schizosaccharomyces pombe (73)
Human immunodeficiency virus 1 (73)
Oryza sativa Indica Group (73)
Sinorhizobium meliloti BL225C (73)
Sus scrofa domesticus (73)
Ostreococcus tauri (73)
Saccharomyces cerevisiae (73)
Vitis vinifera (73)
Staphylococcus aureus (73)
Rattus norvegicus (73)
Escherichia coli (73)
Candida albicans (73)
Cyanophora paradoxa (73)
Bursaphelenchus xylophilus (73)
Pseudomonas aeruginosa SJTD-1 (73)
Canis lupus familiaris (73)
Camelus dromedarius (73)
Entamoeba histolytica (73)
Physcomitrium patens (73)
Homo sapiens (6)
Mus musculus (3)
Neurospora crassa (1)
Pichia kudriavzevii (1)
Macrobrachium nipponense (1)
Beauveria bassiana ARSEF 2860 (1)
Metarhizium sp. (1)
Ziziphus jujuba var. spinosa (1)
Klebsiella variicola UCI 18 (1)
Neospora caninum (1)
Candida albicans (1)

Organisms

Homo sapiens (2)
Aspergillus fumigatus (1)
Neurospora crassa (1)

Repository

pride (73)
iProX (12)
PAXDB (9)
ENA (6)
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biostudies-arrayexpress (4)
MetaboLights (3)
geo (2)

Tissue

Cell culture (8)
Plant cell (5)
Brain (4)
Leaf (4)
Melanocyte (3)
Epithelial cell (3)
Embryo (2)
Blood cell (2)
Somatic muscle cell (1)
Endosperm (1)
Anterior chamber of the eye (1)
Fruit (1)
Mycelium (1)
Epithelial cell of lung (1)
Cell (1)
Fat body (1)
Seed (1)
Milk (1)
Shoot (1)
Macrophage (1)
Blood plasma (1)
Root (1)
Whole body (1)
Fibroblast (1)
Primary cell (1)
Lung (1)
Permanent cell line cell (1)

Disease

Melanoma (3)
Disease free (3)
Asthma (1)
Cataract (1)
Exfoliation syndrome (1)
Parasitic infectious disease (1)
Salt (1)
Bacterial infectious disease (1)
Diabetes mellitus (1)
Plasmodium falciparum malaria (1)
Primary open angle glaucoma (1)
Parkinson's disease (1)
Brain cancer (1)
Alzheimer's disease (1)
Malignant neoplasm of ovary (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (73)
Shotgun proteomics (33)
Bottom-up proteomics (14)
Data-dependent acquisition (13)
Gel-based experiment (11)
Mass spectrometry (3)
HDMSE (3)
Affinity purification coupled with mass spectrometry proteomics (3)
SWATH MS (2)
Data-independent acquisition (2)
Mass spectrometry imaging (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Bruker Daltonics instrument model (1)
LTQ Orbitrap Velos (1)
6530C Q-TOF LC/MS (Agilent instrument model) (1)
Q Exactive HF (1)
Q Exactive (1)
Agilent 7890A GC-LECO Pegasus HT TOFMS (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2024 (13)
2023 (13)
2016 (13)
2020 (13)
2026 (11)
2025 (9)
2021 (9)
2019 (6)
2017 (5)
2022 (5)
2015 (3)
2018 (3)
2013 (2)
2014 (2)
2011 (1)

UNIPROT ID/AC

A0A3B6HXF8_WHEAT (6)
A0A077S6R6_WHEAT (6)
A0A096UL77_WHEAT (6)
H2A3_WHEAT (6)
A0A3B6QAP5_WHEAT (6)
A0A3B6CHB5_WHEAT (6)
A0A1D5SG47_WHEAT (6)
A0A3B5XUN5_WHEAT (6)
Q35980_WHEAT (6)
A0A3B6C520_WHEAT (6)
A0A3B6NVH1_WHEAT (6)
A0A3B6RB72_WHEAT (6)
A0A3B6D6R2_WHEAT (6)
A0A3B6HQF6_WHEAT (6)
U2A2B_WHEAT (6)
A0A3B6ED37_WHEAT (6)
A0A3B6HTK9_WHEAT (6)
W5CXQ1_WHEAT (6)
A0A3B6AUT2_WHEAT (6)
W5A874_WHEAT (6)
IF4A_WHEAT (6)
UBE12_WHEAT (6)
A0A3B6NM78_WHEAT (6)
A0A3B6I2U5_WHEAT (6)
A0A3B6B8R9_WHEAT (6)
A0A3B6HRL5_WHEAT (6)
A0A3B6U0I3_WHEAT (6)
A0A3B6GZM0_WHEAT (6)
TBB2_WHEAT (6)
A0A1D6SCP9_WHEAT (6)

CHEBI ID

CHEBI:30769 (3)
CHEBI:36090 (2)
CHEBI:16119 (2)
CHEBI:16634 (2)
CHEBI:16551 (2)
CHEBI:17521 (2)
CHEBI:18012 (2)
CHEBI:15714 (2)
CHEBI:16865 (2)
CHEBI:17992 (2)
CHEBI:6650 (2)
CHEBI:29016 (2)
CHEBI:78320 (2)
CHEBI:27897 (2)
CHEBI:77153 (1)
CHEBI:201559 (1)
CHEBI:131174 (1)
CHEBI:59579 (1)
CHEBI:37415 (1)
CHEBI:184001 (1)
CHEBI:34974 (1)
CHEBI:181990 (1)
CHEBI:33064 (1)
CHEBI:218365 (1)
CHEBI:61793 (1)
CHEBI:135632 (1)
CHEBI:92721 (1)
CHEBI:131999 (1)
CHEBI:59440 (1)
CHEBI:181150 (1)

Metabolite Name

D-ribulose-15-bisphosphate (1)
Acetyl coenzyme A (1)
4-Aminobutyric acid (1)
N-acetyl-D-glucosamine 6-phosphate (1)
Fructose 6-phosphate (1)
Phosphoglyceric acid (1)
Glucose 6-phosphate (1)
D-glucosamine 6-phosphate (1)
Alpha-ketoglutaric acid (1)
Malic acid (1)
Fumaric acid (1)
Phosphoenolpyruvate (1)
Lactic acid (1)
Xylose (1)
P-Coumaric acid (1)
P-Hydroxybenzoic acid (1)
Shikimic acid (1)
Citric acid (1)
Vanillic acid (1)
Glycerol (1)
Ethanolamine (1)
Glucose (1)
6-phosphogluconic acid (1)
Glutamic acid (1)
Aspartic acid (1)
Mannitol (1)
Pyruvic acid (1)
Succinic acid (1)
Sinapinic acid (1)
Glycolic acid (1)

First Public Date

2024 (2)
2023 (1)
2020 (1)
2019 (1)
2017 (1)

Classification

fungi (1)

Modification

6.020129 (1)
45.029395 (1)
10.008269 (1)
-17.026549 (1)
42.010565 (1)
15.994915 (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
+3amu) (1)

Study type

RNA-seq of coding RNA (2)
Transcription profiling by RT-PCR (1)
Transcription profiling by array (1)

Release Date

2020 (10)
2019 (9)
2024 (8)
2022 (8)
2016 (8)
2015 (7)
2023 (7)
2021 (7)
2018 (7)
2025 (5)
2013 (4)
2011 (4)
2017 (4)
2010 (4)
2026 (3)
2014 (3)
2012 (2)
2009 (2)
2008 (2)
2004 (1)

Lab affiliation

University of Warwick (8)
Moffitt Cancer Center Tampa, FL, USA (3)
Foundation of Ophthalmology Investigation (1)
State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China (1)
University College Dublin, School of Medicine, Conway Institute Belfield Dublin 4, Ireland. (1)
PCF, Biozentrum, University of Basel, Swizerland (1)
Project Leader „Tissue Proteomics“ Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V. Otto-Hahn-Str.6b 44227 Dortmund, Germany (1)
Universidad Autónoma de Querétaro (1)
1. Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2. University of Chinese Academy of Sciences, Beijing 100049, China (1)
College of Life Sciences, Capital Normal University No. 105 Xisanhuan North Road, Beijing 100048 P. R. China (1)
Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Science, The University of Melbourne (1)
Department of Medical Device Management and Research, SAIHST, Sungkyunkwan University, Seoul 06355, Korea (1)
Laboratory of Functional Proteomics (1)
T. S. Keshava Prasad, Institute of Bioinformatics, International Technology Park, Bangalore 560066, India (1)
Institute of Molecular Medicine and Cell Research University of Freiburg Germany (1)
College of Biology and the Environment, Nanjing Forestry University (1)
Faculty Scientist, Institute of Bioinformatics, Bangalore, India (1)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (1)
Department of Plant Bioscience, Life and Industry Convergence Research Institute,Pusan National University, Miryang 50463, Republic of Korea (1)
Department of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Rössle-Straße 10, 13125 Berlin, Germany (1)
Division of Immunobiology, Cincinnati Children’s Hospital, Cincinnati, OH Department of Pediatrics, University of Cincinnati, Cincinnati OH Correspondence: (1)
John van Geest Cancer Research Centre, Nottingham Trent University (1)
Institute of Clinical Chemistry, Bioanalytics, University Medical Center Göttingen, Göttingen, Germany (1)
Mass Spectrometry and Protein Chemistry Institute of Molecular Pathology Institute of Molecular Biotechnology (1)
Laboratoire des bactériophages et de phagothérapie, CRISP, CHUV, Lausanne, Switzerland (1)
Ghent University, VIB (1)
Department of Clinical and Toxicological Analysis, Federal University of Alfenas, Brazil (1)
Département d’Immunologie et Biologie Cellulaire, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, Québec, Canada, (1)
Protein Analysis Group, Department of Pharmacy, University of Copenhagen, Copenhagen, Denmark (1)
Professor of Microbial Pathogenesis Institute of Integrative Biology Room 308, Biosciences Building, University of Liverpool Crown Street, Liverpool L69 7ZB, United Kingdom (1)

Tags

xref:PubMed:39907037 (1)
xref:EuropePMC:PMC10203453 (1)
xref:PubMed:28947916 (1)
xref:PubMed:31647025 (1)
pathogen:fungus (1)
pathogen (1)

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An Integrated Biochemical, Proteomics, and Metabolomics Approach for Supporting Medicinal Value of Panax ginseng Fruits (GC-MS assay)

Panax ginseng roots are well known for their medicinal properties and have been used in Korean and Chinese traditional medicines for 1000s of years. However, the medicinal value of P. ginseng fruits remain poorly characterized. Using gas chromatography-time of flight mass spectrometry (GC-TOF MS), 6...

2016-11-18 | MTBLS350 | MetaboLights

LED lamps induce a differential regulation of proteins and enhance somatic embryo maturation in Carica papaya

The use of light-emitting diode (LED) lamps could be an alternative method to improve somatic embryogenesis, yielding more efficient somatic embryo development and maturation than the use of conventional fluorescent lamps. The aim of this work was to study the influence of light quality on the somat...

ORGANISM(S): Carica papaya

2019-09-11 | PXD009785 | Pride

Comprehensive Proteomics Analysis Identifies CD38-Mediated NAD⁺ Decline Orchestrating Renal Fibrosis in Pediatric Patients With Obstructive Nephropathy.

Not available

S-EPMC10025283 | biostudies-literature

Comparative proteomics of stenotopic caddisfly Crunoecia irrorata identifies acclimation strategies to warming.

Not available

S-EPMC6856850 | biostudies-literature

Identification of p90 Ribosomal S6 Kinase 2 as a Novel Host Protein in HBx Augmenting HBV Replication by iTRAQ-Based Quantitative Comparative Proteomics.

Not available

S-EPMC5947307 | biostudies-literature

A Comparative Analysis of Data Analysis Tools for Data-Independent Acquisition Mass Spectrometry.

Not available

S-EPMC10458344 | biostudies-literature

The Fatty Acid β-Oxidation Pathway is Activated by Leucine Deprivation in HepG2 Cells: A Comparative Proteomics Study.

Not available

S-EPMC5432498 | biostudies-literature

Luteolibacter sp. VK1 comparative proteomics

Bacterial exopolysaccharides (EPS) display extensive structural diversity arising from variation in monosaccharide composition, glycosidic linkages, and non-carbohydrate modifications. However, the enzymes responsible for degrading many EPS structures remain unknown, reflecting the limited coverage ...

ORGANISM(S): Luteolibacter

2026-09-04 | PXD080453 | Pride

Exopolysaccharide Q-exactive Luteolibacter Proteomics

Mass spectrometry-based proteomic platforms for better understanding of SARS-CoV-2 induced pathogenesis and potential diagnostic approaches.

Not available

S-EPMC8250252 | biostudies-literature

Comparative Analysis of Digestion Methods for Bile Proteomics: The Key to Unlocking Biliary Biomarker Potential.

Not available

S-EPMC11391409 | biostudies-literature

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215 Results

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Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

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UNIPROT ID/AC

CHEBI ID

Metabolite Name

First Public Date

Classification

Modification

Study type

Release Date

Lab affiliation

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