Compatible interaction

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Unknown (1038)
Transcriptomics (234)
Genomics (148)
Proteomics (68)
Metabolomics (28)
Other (11)
Models (2)

Organisms

Homo sapiens (59)
Mus musculus (45)
Arabidopsis thaliana (28)
Oryza sativa (15)
Triticum aestivum (10)
Glycine max (9)
Drosophila melanogaster (7)
Hordeum vulgare (5)
Saccharomyces cerevisiae (4)
Medicago truncatula (4)
Vitis vinifera (4)
Rattus norvegicus (3)
Vigna unguiculata (3)
Solanum tuberosum (3)
Schizophyllum commune (2)
Rhodopirellula baltica (2)
Aspergillus fumigatus (2)
Pseudomonas aeruginosa UCBPP-PA14 (2)
Bos taurus (2)
Rhizobium etli (2)
Citrullus lanatus (2)
Zea mays subsp. mays (2)
Phocaeicola vulgatus (1)
Gastrodia elata (1)
Listeria monocytogenes serotype 4b str. F2365 (1)
Capsicum annuum (1)
Myxococcus xanthus (1)
Gossypium hirsutum (1)
Vitis riparia x Vitis berlandieri (1)
Leishmania mexicana (1)

Organisms

Arabidopsis thaliana (13)
Mus musculus (13)
Homo sapiens (13)
Oryza sativa (6)
Glycine max (4)
Triticum aestivum (3)
Solanum lycopersicum (3)
Populus trichocarpa x Populus deltoides (2)
Medicago truncatula (2)
Vitis vinifera (2)
Oryza sativa Japonica Group (2)
Listeria monocytogenes LO28 (1)
Serendipita indica (1)
Rhizobium etli (1)
Phytophthora nicotianae INRA-310 (1)
shoot metagenome (1)
Vigna unguiculata (1)
Prunus cerasifera (1)
Ustilago esculenta (1)
Thymus vulgaris (1)
Citrus x clementina (1)
Rosa hybrid cultivar (1)
Hordeum vulgare (1)
Secale cereale (1)
Pyricularia oryzae (1)
Brassica napus (1)
Drosophila melanogaster (1)
Citrullus lanatus (1)
Beta vulgaris (1)
Malus domestica (1)

Repository

biostudies-arrayexpress (182)
ENA (128)
geo (82)
pride (56)
MetaboLights (28)
MassIVE (6)
jPOST (3)
BioModels (2)
iProX (2)
EGA (1)
PAXDB (1)

Tissue

Cell culture (8)
Plant cell (5)
Leaf (4)
Permanent cell line cell (4)
Cell suspension culture (3)
Fibroblast (3)
Embryonic stem cell (2)
Epithelial cell (2)
T cell (2)
Skin cancer cell (1)
Endocrine pancreas (1)
Type B pancreatic cell (1)
Cardiocyte (1)
Retinal pigment epithelial cell (1)
Retinal pigment epithelium cell (1)
Cerebellum (1)
Blood platelet (1)
Bile (1)
Extracellular vesicle (1)
Skin (1)
Early embryonic cell (1)
Bone marrow (1)
Blood serum (1)
Feces (1)
Heart (1)
Brain (1)
Root (1)
Embryo (1)
Spleen (1)
Primary cell (1)

Disease

Normal (4)
Blumeria graminis hordei (powdery mildew) inoculation (1)
Cladosporium fulvum infected (1)
Colorectal cancer recurrence-free (1)
Xoo inoculated (1)
Raji Burkitt's lymphoma (1)
Melanoma (1)
Fanconi anemia complementation group A (1)
Bacterial gastritis (1)
Chronic kidney disease (1)
Bacterial infectious disease (1)
Carcinoma (1)
Trichothiodystrophy (1)
Non-small cell lung carcinoma (1)
Pancreatic ductal adenocarcinoma (1)
Cardiovascular system disease (1)
Liver cancer (1)
Disease free (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (56)
Mass spectrometry (28)
Shotgun proteomics (20)
Bottom-up proteomics (11)
Affinity purification coupled with mass spectrometry proteomics (10)
Data-dependent acquisition (5)
Data-independent acquisition (4)
Gel-based experiment (4)
Top-down proteomics (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
MSE (2)
Metaproteomics (1)
Proteogenomics (1)
RNA mass spectrometry (1)
SWATH MS (1)
SRM/MRM (1)

Instrument Platform

Q Exactive (20)
Illumina NovaSeq 6000 (12)
Illumina HiSeq 2500 (4)
Illumina HiSeq 4000 (4)
Illumina Genome Analyzer II (3)
Illumina MiSeq (3)
Q Exactive Plus (3)
NA (2)
NextSeq 550 (2)
Liquid Chromatography MS - negative - hilic (2)
I.DOT (Dispendix), C.WASH (CYTENA), Qubit Fluorometer (Thermo Fisher Scientific), Agilent TapeStation 4200 (1)
BD FACSDiscover S8 (1)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
FastPrep-24 5G bead beater, Qubit Fluorometer (1)
12 well TC-treated plate, LETs buffer, dry ice (1)
BD Influx (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
Other (1)
Illumina Genome Analyzer IIx (1)
GenePix 4000B [Axon Instruments] (1)
N/A (1)
Illumina (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
6230B Time-of-Flight LC/MS (1)
LTQ Orbitrap Elite (1)

Publication Date

2011 (32)
2024 (28)
2015 (27)
2014 (25)
2013 (24)
2026 (23)
2012 (23)
2016 (20)
2025 (18)
2020 (16)
2010 (15)
2022 (14)
2021 (14)
2018 (14)
2023 (13)
2009 (12)
2008 (9)
2019 (9)
2017 (8)
2007 (7)
2006 (4)
2004 (3)
2005 (2)
2003 (1)

UNIPROT ID/AC

A0A287UVJ0_HORVV (1)
A0A287WKV1_HORVV (1)
A0A287UM58_HORVV (1)
A0A287W4U1_HORVV (1)
A0A287UDB6_HORVV (1)
A0A287S9L1_HORVV (1)
M0XJ99_HORVV (1)
4513.MLOC_56925.1 (1)
A0A287PQ86_HORVV (1)
M0WBJ1_HORVV (1)
A0A287X924_HORVV (1)
M0VLU4_HORVV (1)
F2CQY2_HORVV (1)
F2DZU2_HORVV (1)
F2DIZ2_HORVV (1)
A0A287HRN3_HORVV (1)
A0A287W6W0_HORVV (1)
F2D3N8_HORVV (1)
A0A287UG61_HORVV (1)
M0V098_HORVV (1)
M0UNX8_HORVV (1)
A0A2R9J7F6_HORVV (1)
A0A287M419_HORVV (1)
M0YJB9_HORVV (1)
4513.MLOC_4164.1 (1)
A0A287NPV4_HORVV (1)
A0A287XFU0_HORVV (1)
M0VVD4_HORVV (1)
A0A287U0I6_HORVV (1)
F2E048_HORVV (1)

CHEBI ID

CHEBI:18132 (23)
CHEBI:15428 (23)
CHEBI:32816 (22)
CHEBI:15354 (22)
CHEBI:17562 (21)
CHEBI:6650 (21)
CHEBI:17822 (20)
CHEBI:16708 (20)
CHEBI:16610 (20)
CHEBI:17268 (20)
CHEBI:16335 (20)
CHEBI:16010 (20)
CHEBI:17750 (20)
CHEBI:16449 (20)
CHEBI:18012 (20)
CHEBI:16761 (2)
CHEBI:16908 (2)
CHEBI:5656 (1)
CHEBI:26689 (1)
CHEBI:17287 (1)
CHEBI:44897 (1)
CHEBI:422 (1)
CHEBI:4167 (1)
CHEBI:29101 (1)
CHEBI:29108 (1)
CHEBI:14314 (1)
CHEBI:16027 (1)
CHEBI:17138 (1)
CHEBI:16905 (1)
CHEBI:15422 (1)

Metabolite Name

Fumarate (21)
Glycine (21)
Serine (20)
Asparagine (20)
Succinate (20)
Alanine (20)
Isoleucine (20)
Myo-inositol (20)
Pipecolate (19)
Tryptophan (19)
Malate (19)
Glutamate (19)
Cysteine (19)
Aspartate (19)
Arginine (19)
Phenylalanine (19)
Tyrosine (19)
Threonine (19)
Choline (19)
Glutamine (19)
Lactate (19)
Valine (19)
Leucine (19)
Spermidine (19)
Threonate (18)
Phosphate (18)
N-acetylalanine (18)
Imidazole lactate (18)
Glycerol 3-phosphate (18)
Gamma-glutamylthreonine (18)

First Public Date

2014 (32)
2024 (22)
2026 (14)
2022 (8)
2021 (7)
2020 (7)
2018 (7)
2017 (7)
2025 (6)
2023 (6)
2016 (5)
2015 (4)
2019 (2)
2013 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Eppley Institute for Research in Cancer University of Nebraska Medical Center Omaha, NE 68198, USA (2)
CEA-Marcoule, DRF-SPI-Li2D (2)
College of Horticulture, Northwest A&F University (2)
Technical University of Munich (TUM), TUM School of Natural Sciences, Department Bioscience, Chair of Organic Chemistry II, Center for Functional Protein Assemblies (CPA), Ernst-Otto-Fischer Str. 8, Garching 85748, Germany (1)
School of Life Sciences, The Chinese University of Hong Kong, Sha Tin, N.T., Hong Kong State Key Laboratory of Agrobiotechnology, and School of Life Sciences, The Chinese University of Hong Kong, Shatin N.T., Hong Kong. (1)
Academy Professor, Turku Centre for Biotechnology, University of Turku and Abo Akademi University, Turku, Finland (1)
Biochemistry Dept, University of Cambridge, UK (1)
German Cancer Research Center (DKFZ),Division Systems Biology of Signal Transduction, INF 280, 69120 Heidelberg (1)
State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China (1)
Instituto de Tecnologia Química e Biológica. Lab of Proteomic of Non-model Organism (1)
Biomolecular Mass Spectrometry and Proteomics, University Utrecht, Utrecht, The Netherlands (1)
Radboud University Nijmegen, The Netherlands (1)
Agriculture and Agrifood Canada Morden Research and Development Centre (1)
Mass Spectrometry Research Center, Department of Biochemistry, Vanderbilt University (1)
Biomedical Research Center, Slovak Academy of Sciences (1)
Core Facility for Mass Spectrometry & Proteomics Center for Molecular Biology of Heidelberg University Heidelberg, Germany (1)
Laboratory of Plant Defense Proteins, Department of Biochemistry and Molecular Biology, Federal University of Ceara, Fortaleza, Brazil. (1)
Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Cd. Universitaria, Coyoacán, Ciudad de México, México (1)
Protein Analysis Group, Department of Pharmacy, University of Copenhagen, Copehagen, Denmark (1)
Department of Chemical Physiology and Biochemistry Oregon Health & Science University Portland, OR, USA. (1)
Aarhus University, Department of Molecular Biology and Genetics (1)
Department of Innovative Technologies in Medicine and Dentistry,University “G. d’Annunzio” of Chieti-Pescara, Italy (1)
NICM HRI, Western Sydney University, NSW, Australia (1)
Civil and Environmental Engineering, Virginia Tech, Blacksburg, VA, USA (1)
Division Systems Biology of Signal Transduction German Cancer Research Center (DKFZ) Im Neuenheimer Feld 280 69120 Heidelberg, Germany (1)
LSMBO IPHC UMR7178 CNRS Université de Strasbourg (1)
John van Geest Cancer Research Centre, Nottingham Trent University (1)
Analytical Chemistry Department, University of Barcelona (1)
Turku Bioscience, University of Turku and Åbo Akademi University (1)
CSSB Centre for Structural Systems Biology, Deutsches Elektronen Synchroton DESY, Leibniz Institute of Virology, Germany; University of Luebeck, Institute for Chemistry and Metabolomics (1)

IsPrivate

False (2)

Classification

bacteria (2)

Modification

N6 (1)

Study type

Transcription profiling by array (94)
RNA-seq of coding RNA (42)
ChIP-seq (9)
RNA-seq of non coding RNA (8)
Other (5)
RNA-seq of total RNA (5)
DNA-seq (4)
RNA-seq of coding RNA from single cells (3)
Methylation profiling by high throughput sequencing (3)
Cell line - High-throughput sequencing (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
Unknown experiment type (1)
High-throughput sequencing (1)
CLIP-seq (1)

Release Date

2022 (105)
2021 (88)
2023 (87)
2015 (78)
2024 (78)
2017 (72)
2019 (72)
2020 (68)
2025 (65)
2016 (64)
2014 (59)
2018 (56)
2013 (56)
2012 (52)
2011 (51)
2010 (43)
2009 (32)
2008 (21)
2026 (20)
2007 (15)
2006 (12)
2005 (9)
2003 (5)
2004 (4)
2001 (3)
2000 (1)
1999 (1)
1998 (1)
1997 (1)
1996 (1)

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Arabidopsis thaliana/Hyaloperonospora arabidopsidis compatible interaction transcriptome

We used Arabidopsis full-genome microarrays to characterize plant transcript accumulations at different stages of infection with the biotrophic oomycete downy mildew pathogen, Hyaloperonospora arabidopsidis : initiation (< 1 dpi) and maintenance of infection (> 4 dpi). In two independent experiment...

ORGANISM(S): Arabidopsis thaliana

2010-04-07 | E-GEOD-21076 | biostudies-arrayexpress

Arabidopsis thaliana wild-type and pskr1-5 transcriptome upon the compatible interaction with Hyaloperonospora arabidopsidis

We used Arabidopsis full-genome microarrays to characterize plant transcript accumulations in wild-type plants and pskr1-5 mutants, 3 days after water treatment and inoculation with the biotrophic oomycete downy mildew pathogen, Hyaloperonospora arabidopsidis. In two independent experiments, cotyled...

ORGANISM(S): Arabidopsis thaliana

2012-04-13 | E-GEOD-37255 | biostudies-arrayexpress

The Arabidopsis thaliana map65-3 and ugt76b1 mutant transcriptomes upon the compatible interaction with Hyaloperonospora arabidopsidis

We used Arabidopsis full-genome microarrays to characterize plant transcript accumulations in map65-3 and ugt76b1 mutants, 3 days after water treatment and inoculation with the biotrophic oomycete downy mildew pathogen, Hyaloperonospora arabidopsidis (Hpa) In two independent experiments, cotyledons ...

ORGANISM(S): Arabidopsis thaliana

2015-09-23 | E-GEOD-73351 | biostudies-arrayexpress

Arabidopsis thaliana/Phytophthora parasitica compatible interaction transcriptome

Oomycetes from the genus Phytophthora are fungus-like plant pathogens that are devastating for agriculture and natural ecosystems. Due to particular physiological characteristics, no treatments against diseases caused by oomycetes are presently available. To develop such treatments, it appears essen...

ORGANISM(S): Arabidopsis thaliana

2010-04-28 | E-GEOD-20226 | biostudies-arrayexpress

Label-free Proteomics Reveals that Cowpea Severe Mosaic Virus Transiently Suppresses the Host Leaf Protein Accumulation During the Compatible Interaction with Cowpea (Vigna unguiculata [L.] Walp.)

Viruses are important plant pathogens that threaten diverse crops worldwide. Diseases caused by Cowpea severe mosaic virus (CPSMV) have drawn attention because of the serious damages they cause to economically important crops including cowpea. This work was undertaken to quantify and identify the re...

ORGANISM(S): Vigna mungo (Rice bean) (Black gram)

2016-12-14 | PXD005025 | Pride

Arabidopsis thaliana/Phytophthora parasitica compatible interaction transcriptome

ORGANISM(S): Arabidopsis thaliana

2010-04-20 | GSE20226 | GEO

Proteome responses of Grapevine to Downy mildew

A comparative proteomic analysis of grapevine leaves from the resistant genotype V. davidii ‘LiuBa-8’ (LB) and susceptible genotype V. vinifera ‘Pinot Noir’ (PN) at 12 hpi was conducted to understand the complex relationship between grapevine and P. viticola and the molecular mechanisms between diff...

ORGANISM(S): Vitis vinifera (Grape)

2021-09-09 | PXD018868 | Pride

P.viticola Grapevine Compatible and incompatible interactions Itraq

Gene expression associated with compatible viral diseases in berry

To understand the fruit changes and mechanisms involved in the compatible grapevine-virus interaction, we analyzed the berry transcriptome in two stages of development (veraison and ripening) in the red wine cultivar Cabernet Sauvignon infected with Grapevine leaf-roll-associated virus-3 (GLRaV-3). ...

ORGANISM(S): Vitis vinifera

2011-08-25 | E-GEOD-31660 | biostudies-arrayexpress

Transcriptional profilling of potato during a compatible interaction with the root-knot nematode Melodoigyne javanica

PRJNA556420 | ENA

Expression profiling during arabidopsis/downy mildew interaction reveals a highly-expressed effector that attenuates responses to salicylic acid.

Plants have evolved strong innate immunity mechanisms, but successful pathogens evade or suppress plant immunity via effectors delivered into the plant cell. Hyaloperonospora arabidopsidis (Hpa) causes downy mildew on Arabidopsis thaliana, and a genome sequence is available for isolate Emoy2. Here, ...

ORGANISM(S): Arabidopsis thaliana

2014-11-21 | E-GEOD-53641 | biostudies-arrayexpress

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1529 Results

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