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MetabolomicsSelective profiling of translationally active tRNAs and their dynamics under stress

During translation, transfer RNAs (tRNAs) deliver specific amino acids to the ribosome in a coordinated manner with the sequence encoded by the mRNA. Despite their central role in protein synthesis, the precise contribution of tRNAs to the modulation of translation remains poorly understood, prim...

2026-06-25 | MTBLS12806 | MetaboLights
MetabolomicsMulti-omics analysis of xylem sap uncovers dynamic modulation of poplar defenses by ammonium and nitrate
Xylem sap is the major transport route for nutrients from roots to shoots. In the present study, we investigated how variations in nitrogen (N) nutrition affected the metabolome and proteome of xylem sap and the growth of the xylem endophyte Brennaria salicis, and we also report transcriptional re-w...
2022-07-04 | MTBLS2305 | MetaboLights
ProteomicsOnline Nanoflow Two-Dimension Comprehensive Active Modulation Reversed Phase-Reversed Phase Liquid Chromatography High Resolution Mass Spectrometry for Metaproteomics of Environmen-tal and Microbiome Samples
Metaproteomics is a powerful analytical approach that can assess the functional capabilities deployed by microbial communi-ties in both environmental and biomedical microbiome settings. Yet the mass spectra resulting from these mixed biological communities are challenging due to the high number of l...
ORGANISM(S): Homo sapiens (Human) marine plankton environmental sample 
2022-05-20 | PXD027351 | Pride
Automated Metaproteomics Proteomics Comprehensive active modulation 2dlc Rprp Lc Ocean Lcms 
UnknownReducing Dilution and Analysis Time in Online Comprehensive Two-Dimensional Liquid Chromatography by Active Modulation.
Not available
S-EPMC5373567 | biostudies-literature
Genomicsena-DATASET-NU-14-08-2018-09:55:07:894-1179 - samples
Comprehensive genetic analyses including whole-exome sequencing, targeted sequencing, and whole-genome sequencing were performed to reveal the molecular pathogenesis of chronic active Epstein-Barr virus infection.
EGAD00001004299 | EGA
UnknownOnline Nanoflow Two-Dimension Comprehensive Active Modulation Reversed Phase-Reversed Phase Liquid Chromatography High-Resolution Mass Spectrometry for Metaproteomics of Environmental and Microbiome Samples.
Not available
S-EPMC9009399 | biostudies-literature
ProteomicsMicrobial Metaproteome from the Western Atlantic Ocean DeepDOM KN210-04 Expedition
This dataset consists of 20 metaproteomic analyses of the Western Atlantic Ocean aboard the R/V Knorr KN210-04 DeepDOM expedition in 2013. Samples were collected by McLane pumps on GFF or GF75 filters, split, and frozen until analyses. Expedition metadata and co-sampled datasets are available at: ht...
ORGANISM(S): Acyrthosiphon pisum (Pea aphid) 
2022-05-24 | PXD034035 | Pride
Atlantic ocean Microbial metaproteome Deepdom 
GenomicsComprehensive genetic analysis of Epstein-Barr virus-associated hematological malignancy
Comprehensive genetic analyses including whole-exome sequencing, targeted sequencing, and whole-genome sequencing of the human genome and the Epstein-Barr virus (EBV) genome were performed to reveal the molecular pathogenesis of EBV-associated hematological malignancy.
EGAS00001003159 | EGA
UnknownCharacterization of Dye Extracts from Historical Cultural-Heritage Objects Using State-of-the-Art Comprehensive Two-Dimensional Liquid Chromatography and Mass Spectrometry with Active Modulation and Optimized Shifting Gradients.
Not available
S-EPMC6383186 | biostudies-literature
ProteomicsCollagen-derived prolyl-hydroxyproline dipeptide promotes cellular homeostasis and lamellipodia-driven cell motility through active β1-integrin in adult tendon cells
Collagen-derived hydroxyproline-containing peptides show a variety of biological properties in cells. However, no comprehensive study has yet explored the functional links between Hyp-containing peptides and cellular behavior. Here, we show that the dipeptide prolyl-hydroxyproline (Pro–Hyp) exhibits...
ORGANISM(S): Mus musculus (Mouse) 
2022-09-28 | PXD020374 | Pride
Collagen-derived peptide  proline-hydroxyproline  adult tendon cells  extracellular matrix  scleraxis  cell motility  extracellular signal-regulated kinase 
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