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MetabolomicsMass spectrometry based metabolomics for in vitro systems pharmacology: Pitfalls, challenges, and computational solutions

INTRODUCTION: Mass spectrometry based metabolomics has become a promising complement and alternative to transcriptomics and proteomics in many fields including in vitro systems pharmacology. Despite several merits, metabolomics based on liquid chromatography mass spectrometry (LC...

2017-08-23 | MTBLS401 | MetaboLights
MetabolomicsProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis

Genes are pleiotropic and getting a better knowledge of their function requires a comprehensive characterization of their mutants. Here, we generated multi-level data combining phenomic, proteomic and metabolomic acquisitions from plasma and liver tissues of two C57BL/6 N mouse models lacking the...

2021-09-01 | MTBLS1903 | MetaboLights
MetabolomicsMetabolome analysis via an HPLC-ESI-MS-based experimental and computational pipeline for chronic nephron toxicity profiling
Untargeted metabolomics has the potential to improve the predictivity of in vitro toxicity models and therefore may aid the reduction of expensive and laborious animal models. Here we describe a chronic nephrotoxicity study conducted on a human renal proximal tubular epithelial cell line (RPTEC/TERT...
2015-09-07 | MTBLS140 | MetaboLights
Unknowncompomics-utilities: an open-source Java library for computational proteomics.
Not available
S-EPMC3060842 | biostudies-literature
UnknownProteinInferencer: Confident protein identification and multiple experiment comparison for large scale proteomics projects.
Not available
S-EPMC4630118 | biostudies-literature
ProteomicsDIA-Umpire: comprehensive computational framework for data independent acquisition proteomics
This dataset consists of 44 raw MS files, comprising 27 DIA (SWATH) and 15 DDA runs on a TripleTOF 5600 and of two raw mass spectrometry files acquired on a Q Exactive. The composition of the dataset is described in the manuscript by Tsou et al., titled: "DIA-Umpire: comprehensive computational fra...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2015-01-21 | PXD001587 | Pride
Swath Dia 
UnknownMASH Suite Pro: A Comprehensive Software Tool for Top-Down Proteomics.
Not available
S-EPMC4739683 | biostudies-literature
UnknownA Bayesian mixture modelling approach for spatial proteomics.
Not available
S-EPMC6258510 | biostudies-literature
UnknownA Bioconductor workflow for processing and analysing spatial proteomics data.
Not available
S-EPMC6053703 | biostudies-literature
UnknownA comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.
Not available
S-EPMC3775642 | biostudies-literature
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