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ProteomicsCooper Salvia columbariae chia seeds, roots, hypocotyls, and cotyledons
Cooper sought to increase the sensitivity of peptide detection and broaden the range of tissues covered through his analysis of chia proteomes. Targeted tissues were ungerminated seeds and the roots, hypocotyls, and cotyledons of five-day-old seedlings. As in Husselmann 2017, TCEP was employed for...
ORGANISM(S): Salvia Columbariae (ncbitaxon:95165) 
2021-02-15 | MSV000086863 | MassIVE
TranscriptomicsPulsatile exposure to simulated reflux leads to stereotypical changes in gene expression in a 3D model of oesophageal mucosa
Oesophageal exposure to duodenogastroesophageal refluxate is implicated in the development of BarrettM-bM-^@M-^Ys Metaplasia, with increased risk of progression to oesophageal adenocarcinoma. The literature proposes that reflux exposure activates NF-kB, driving the aberrant expression of intestine-s...
ORGANISM(S): Homo sapiens 
2013-03-22 | E-GEOD-45380 | biostudies-arrayexpress
GenomicsFunctional association of Gdown1 with RNA Polymerase II in Human
Most human genes are loaded with promoter proximally paused RNA polymerase II (RNAP II) molecules that are poised for release into productive elongation by P-TEFb. Gdown1, a protein that renders RNAP II responsive to mediator, is involved in RNAP II elongation control. During in vitro transcription ...
ORGANISM(S): Homo sapiens 
2012-01-13 | E-GEOD-32442 | biostudies-arrayexpress
GenomicsRenormalization of GSE32442 and GSE33128 plus 1 control sample
This SuperSeries is composed of the following subset Series: GSE35878: Renormalization of GSE32442 and GSE33128 GSE35882: Whole Cell Extract Refer to individual Series
ORGANISM(S): Homo sapiens 
2012-02-21 | E-GEOD-35886 | biostudies-arrayexpress
GenomicsRenormalization of GSE32442 and GSE33128
Raw data from GSE32442 and GSE33128 and the input dataset for GSE32442 were renormalized by using reads per million. 11 samples from GSE32442 and GSE33128
ORGANISM(S): Homo sapiens 
2012-02-21 | E-GEOD-35878 | biostudies-arrayexpress
TranscriptomicsF11R is a novel monocyte prognostic biomarker for malignant glioma [Seq]
Objective: Brain tumors (gliomas) contain large populations of infiltrating macrophages and recruited microglia, which in experimental murine glioma models promote tumor formation and progression. Among the barriers to understanding the contributions of these stromal elements to high-grade glioma (g...
ORGANISM(S): Mus musculus 
2013-11-13 | E-GEOD-46688 | biostudies-arrayexpress
GenomicsWhole Cell Extract
Most human genes are loaded with promoter proximally paused RNA polymerase II (RNAP II) molecules that are poised for release into productive elongation by P-TEFb. Gdown1, a protein that renders RNAP II responsive to mediator, is involved in RNAP II elongation control. During in vitro transcription ...
ORGANISM(S): Homo sapiens 
2012-02-21 | E-GEOD-35882 | biostudies-arrayexpress
ProteomicsKlein / Husselmann chia under salt and caffeic acid stress
Husselmann 2017: Following gel and TOF/TOF investigation of chia salinity stress by Achmat Williams [http://hdl.handle.net/11394/5650], Husselmann and Klein designed an LC-MS/MS experiment for five replicates in each of five cohorts: caffeic acid stress, salt stress, both stresses, and controls for ...
ORGANISM(S): Salvia Hispanica (ncbitaxon:49212) 
2021-02-12 | MSV000086861 | MassIVE
Transcriptomics3C-seq analysis of Acinetobacter baumannii AB5075 in the presence and absence of H-NS-39
The experiment contains 3C-seq data for Acinetobacter baumannii strain AB5075 with different genetic alterations. The strain was grown at 37 degrees in LB medium and nucleoprotein was cross-linked using formaldehyde. Genomic DNA was isolated and digested with NlaIII before being ligated with T4 liga...
ORGANISM(S): Acinetobacter baumannii 
2024-07-15 | E-MTAB-13800 | biostudies-arrayexpress
TranscriptomicsMesenchymal Stem/Progenitors and Other Endometrial Cell Types from Women with Polycystic Ovary Syndrome (PCOS) Display Inflammatory and Oncogenic Potential
Context: Endometrium in polycystic ovary syndrome (PCOS) presents altered gene expression indicating progesterone resistance and predisposing to reduced endometrial receptivity and endometrial cancer. Objective: We hypothesized that an altered endocrine/metabolic environment in PCOS may result in a...
ORGANISM(S): Homo sapiens 
2013-09-30 | E-GEOD-48301 | biostudies-arrayexpress
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