Cortex development

Show results for

Unknown (9303)
Transcriptomics (1337)
Genomics (1335)
Proteomics (179)
Methylation profiling (45)
Other (42)
Metabolomics (27)
Genomic (8)
Models (1)

Organisms

Mus musculus (841)
Homo sapiens (459)
Rattus norvegicus (137)
Macaca mulatta (43)
Arabidopsis thaliana (18)
Sus scrofa (11)
Drosophila melanogaster (10)
Bos taurus (10)
Pan troglodytes (10)
Mustela putorius furo (7)
Chlorocebus sabaeus (5)
Ovis aries (5)
Zea mays (4)
Papio anubis (4)
Brassica napus (3)
Mesocricetus auratus (3)
Gossypium hirsutum (2)
Malus domestica (2)
Lepidium sativum (2)
Mycobacterium tuberculosis (2)
mixed sample (2)
Solanum tuberosum (2)
Solanum lycopersicum (2)
Canis lupus familiaris (2)
Saccharomyces cerevisiae (2)
Pyronema omphalodes (1)
Musa acuminata (1)
Schizophyllum commune (1)
Picea engelmannii x Picea glauca (1)
Rhipicephalus microplus (1)

Organisms

Mus musculus (630)
Homo sapiens (246)
Rattus norvegicus (69)
Macaca mulatta (12)
Pleurodeles waltl (11)
Sus scrofa (8)
Bos taurus (6)
Mustela putorius furo (5)
Callithrix jacchus (5)
Arabidopsis thaliana (4)
Harpegnathos saltator (3)
Macaca fascicularis (3)
Ovis aries (3)
Papio hamadryas (2)
Pan troglodytes (2)
Papio anubis (2)
mouse gut metagenome (2)
Oryza sativa Japonica Group (2)
unidentified (2)
Mustela putorius (1)
Solea senegalensis (1)
Oryctolagus cuniculus cuniculus (1)
Taeniopygia guttata (1)
Xenopus laevis (1)
Lotus japonicus (1)
Eukaryota (1)
Medicago truncatula (1)
Mus musculus musculus (1)
Drosophila melanogaster (1)
Mus (1)

Repository

ENA (1186)
geo (807)
biostudies-arrayexpress (748)
pride (123)
MassIVE (26)
MetaboLights (26)
EGA (17)
iProX (16)
dbGaP (8)
jPOST (6)
PAXDB (4)
ExpressionAtlas (3)
PanoramaPublic (2)
Cell Collective (1)
MetabolomicsWorkbench (1)
PeptideAtlas (1)

Tissue

Internode 6-7 (1)
Embryo 20 days after pollination (1)
Symmetrical division zone of leaf 8 (1)
Internode 7-8 (1)
Root differentiation zone (1)
Mature leaf 8 (1)
Growth zone of leaf 8 (1)
2-4 mm from tip of ear primordium (1)
Secondary root (1)
Root elongation zone (1)
Embryo 38 days after pollination (1)
Pericarp and aleurone (1)
Germinated embryo 2 days after imbibition (1)
6-8 mm from tip of ear primordium (1)
Mature female spikelet (1)
Endosperm 12 days after pollination (1)
Unpollinated silk (1)
Endosperm crown (1)
Stomatal division zone of leaf 8 (1)
Mature pollen (1)
Root cortex (1)
Vegetative meristem (1)
Primary root (1)
Forebrain and midbrain (1)
Temporal lobe (1)
Diencephalon (1)
Diencephalon and midbrain (1)
Forebrain fragment (1)
Medulla oblongata (1)
Choroid plexus (1)

Disease

Alzheimer's disease (9)
Rett syndrome (2)
Multiple sclerosis (2)
Parkinson's disease (2)
Schizophrenia (2)
Amyotrophic lateral sclerosis (2)
Disease free (2)
Autoimmune disorder (1)
Pneumococcal meningitis (1)
Breast adenocarcinoma (1)
Reference (1)
Hypertensive (1)
Cerebral ischemia (1)
Normal (1)
Breast cancer (1)
Neuroblastoma (1)
Epilepsy (1)
Progressive myoclonus epilepsy 1A (1)
Subcortical band heterotopia (1)
Periventricular nodular heterotopia (1)
Leukoencephalopathy with vanishing white matter (1)
Normal pressure hydrocephalus (1)
Intracranial hypertension (1)
Peripheral neuropathy (1)
Encephalopathy (1)
Congestive heart failure (1)
Prion disease (1)
FTDALS1 (1)
Zika fever (1)
Abnormality of prenatal development or birth (1)

Technology Type

Mass Spectrometry (124)
Shotgun proteomics (58)
Bottom-up proteomics (30)
Mass spectrometry (16)
Data-dependent acquisition (15)
Affinity purification coupled with mass spectrometry proteomics (12)
Mass spectrometry assay (10)
SWATH MS (10)
Data-independent acquisition (7)
Gel-based experiment (7)
Top-down proteomics (4)
HDMSE (2)
Illumina HiSeq 2500, ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina MiSeq, NextSeq 500, Illumina HiSeq 2000 (1)
ESI (1)
PAcIFIC (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (20)
Illumina NovaSeq 6000 (19)
Illumina HiSeq 4000 (12)
Illumina HiSeq 2000 (9)
NextSeq 500 (8)
NextSeq 2000 (3)
NextSeq 550 (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
GenePix Personal 4100A [Axon Instruments] (2)
Chemostat (2)
Illumina Genome Analyzer II (2)
Illumina NovaSeq X (2)
N/a (2)
DNBSEQ-G400 (2)
Chromium Next GEM Chip G (1)
10X v3 (1)
Nanopore sequencing (1)
BD Rhapsody (1)
Affymetrix GeneChip Scanner (1)
Microcentrifuge (1)
(Make:PerkinElmer,Model:ScanArray 4000XL) (1)
454 GS FLX (1)
Ion Chef™ System and Ion S5™ System or Ion GeneStudio™ S5 Systems. (1)
Illumina HiSeq (1)
Agilent G2505B scanner. (1)
Illumina iScan system (1)
QIAsymphony SP (1)
Kodak EDAS 290 (1)
Ultra-Turrax, Photometer, Bioanalyzer (1)
ScanArray scanning hardware (1)

Publication Date

2025 (157)
2026 (138)
2024 (116)
2022 (103)
2023 (101)
2015 (100)
2014 (100)
2013 (98)
2021 (96)
2012 (92)
2010 (89)
2011 (86)
2016 (85)
2020 (73)
2008 (61)
2009 (54)
2019 (52)
2017 (50)
2018 (47)
2007 (25)
2006 (15)
2005 (8)
2004 (3)
2003 (1)

UNIPROT ID/AC

9544.ENSMMUP00000031884 (2)
9544.ENSMMUP00000019381 (2)
F6Z8T3_MACMU (2)
UR2R_MACMU (2)
9544.ENSMMUP00000001205 (2)
G7N1N9_MACMU (2)
F6WAT4_MACMU (2)
9544.ENSMMUP00000007419 (2)
NR1I3_MACMU (2)
9544.ENSMMUP00000022875 (2)
9544.ENSMMUP00000003099 (2)
H9Z952_MACMU (2)
F6ZVC7_MACMU (2)
A0A5F7ZTE0_MACMU (2)
F6Z2X1_MACMU (2)
F7GT79_MACMU (2)
F6UCL3_MACMU (2)
F6US75_MACMU (2)
F6WY45_MACMU (2)
F7HU96_MACMU (2)
F6XKH1_MACMU (2)
A0A1D5QGT6_MACMU (2)
A0A5K1U1A1_MACMU (2)
F7BDV4_MACMU (2)
RING1_MACMU (2)
H9H2V1_MACMU (2)
A0A5F7ZIQ7_MACMU (2)
F6RAD9_MACMU (2)
9544.ENSMMUP00000019597 (2)
F6WYS1_MACMU (2)

ENSEMBL ID

ENSG00000229353 (1)
ENSG00000147251 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:16750 (7)
CHEBI:17154 (7)
CHEBI:16235 (7)
CHEBI:16704 (7)
CHEBI:17368 (7)
CHEBI:30769 (7)
CHEBI:24266 (6)
CHEBI:26271 (6)
CHEBI:16040 (6)
CHEBI:16708 (6)
CHEBI:17562 (6)
CHEBI:17748 (6)
CHEBI:15741 (6)
CHEBI:6650 (6)
CHEBI:7916 (6)
CHEBI:17012 (6)
CHEBI:48131 (6)
CHEBI:18012 (6)
CHEBI:17596 (6)
CHEBI:15756 (6)
CHEBI:16264 (5)
CHEBI:16927 (5)
CHEBI:25094 (5)
CHEBI:22653 (5)
CHEBI:22652 (5)
CHEBI:16811 (5)
CHEBI:18257 (5)
CHEBI:15676 (5)
CHEBI:25017 (5)
CHEBI:37024 (5)

Metabolite Name

Pantothenic acid (6)
Guanosine (6)
Uracil (5)
Citric acid (5)
Palmitic acid (5)
Azelaic acid (5)
Cytidine (5)
Xanthine (5)
Thymidine (5)
Hypoxanthine (5)
Galacturonic acid (4)
Epinephrine (4)
Sorbitol (4)
Niacinamide (4)
Citrulline (4)
Carnosine (4)
Gluconic acid (4)
Xanthurenic acid (4)
Nicotinic acid (4)
Kynurenic acid (4)
Ornithine (4)
Succinic acid (4)
Allantoin (4)
Fumaric acid (4)
Taurine (4)
Arachidonic acid (4)
Glyceric acid (4)
Caproic acid (4)
Adenosine (4)
Guanine (4)

First Public Date

2025 (188)
2026 (146)
2024 (135)
2014 (120)
2023 (114)
2022 (91)
2021 (85)
2020 (80)
2019 (52)
2017 (51)
2018 (44)
2016 (33)
2015 (27)
2013 (18)
2011 (2)

Modification

144.102062 (1)
15.994915 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (476)
RNA-seq of coding RNA (120)
Methylation profiling by array (25)
ChIP-seq (20)
RNA-seq of coding RNA from single cells (14)
RNA-seq of non coding RNA (12)
Methylation profiling by high throughput sequencing (10)
Unknown experiment type (8)
ChIP-chip by tiling array (8)
Other (8)
Transcription profiling by RT-PCR (7)
RNA-seq of total RNA (6)
Genotyping by array (4)
Animal - High-throughput sequencing (3)
ChIP-chip by array (3)
Ribo-seq (3)
DNA-seq (3)
Transcription profiling by SAGE (2)
Transcription profiling by tiling array (2)
CLIP-seq (2)
Comparative genomic hybridization by array (2)
Cell line - Single-cell sequencing (1)
Animal - One-color microarray (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
High-throughput sequencing (1)
Whole chromosome random sequencing (1)
Proteomic profiling by mass spectrometer (1)
ScATAC-seq (1)
Single nucleus RNA sequencing (1)

Release Date

2022 (982)
2021 (969)
2025 (923)
2023 (920)
2024 (869)
2020 (809)
2019 (688)
2018 (617)
2017 (516)
2016 (486)
2015 (468)
2014 (385)
2013 (253)
2012 (247)
2010 (206)
2011 (179)
2009 (130)
2008 (114)
2026 (110)
2007 (60)
2006 (31)
2005 (28)
2004 (14)
2003 (13)
2002 (9)
2001 (9)
2000 (8)
1998 (4)
1999 (3)

Lab affiliation

Key Laboratory of Brain Functional Genomics of Shanghai and Ministry of Education, Institute of Brain Functional Genomics, School of Life Science and the Collaborative Innovation Center for Brain Science, East China Normal University, Shanghai, China (3)
ULB Neuroscience Institute (UNI) Université Libre de Bruxelles (ULB) B-6041 Gosselies, Belgium. (2)
Central South University (2)
Dept Biomedical Sciences, School of Medicine and Health Sciences, Institute of Neurosciences, Universitat de Barcelona, E-08036 Barcelona (2)
Keck MS & Proteomics Resource Yale School of Medicine (2)
State Key Laboratory for Infectious Disease Prevention and Control, Prion disease department, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People’s Republic of China (1)
Developmental Neurobiology, Max Planck Institute of Psychiatry, Munich, Germany (1)
527 Miller Research Building 733 N. Broadway Baltimore, MD 21205 (1)
Institut du Fer a Moulin, Inserm-Sorbonne Université UMR-S 1270, Paris, France (1)
Center for Diagbostik, Institute of Neuropathology, University Medical Center Hamburg Eppendorf, Germany (1)
Institute of Cellular Neurosciences II University of Bonn, Germany (1)
Research and Development, NHS Blood and Transplant Nuffield Department of Surgical Sciences, and Oxford Biomedical Research Centre, University of Oxford (1)
Group Leader Proteostasis Charité Universitätsmedizin Berlin, Germany (1)
Department of Developmental and Regenerative Neurobiology, Institute of Brain Science, Nagoya City University Graduate School of Medical Sciences, Japan (1)
Department of Anatomy and Neurobiology, School of Medicine, Virginia Commonwealth University, Richmond, VA USA (1)
Mount Sinai Hospital (Lab Head) (1)
Genetic and Molecular Basis of Neurodevelopmental Disorders, IST Austria, Klosterneuburg, Lower Austria, Austria (1)
Center for Neuroscience Research Children's National Medical Center 111 Michigan Avenue N.W., M7631 Washington, DC 20010-2970 Phone: +1-202-476-4279 Fax: +1-202-476-4988 e-mail: MTorii@childrensnational.org (1)
PHARM/PHARMACY, UW Madison (1)
MRC Laboratory of Molecular Biology, Neurobiology division, Cambridge, UK (1)
Department of Biochemistry, Vanderbilt University, Nashville, TN, USA (1)
Circadian Clock Project, Tokyo Metropolitan Institute of Medical Science, Kamikitazawa 2-1-6, Setagaya-ku, Tokyo, 156-8506, Japan. (1)
Universitat Autònoma de Barcelona (1)
Head of the Mass Spectrometry and Proteomics facility (LSMP) at Institut Curie, France (1)
Kiraly Lab Dept of Psychiatry Friedman Brain Institue Icahn School of Medicine at Mount Sinai (1)
UCLOuvain, Pôle de Recherche en Physiopathologie de la Reproduction, Avenue Hippocrate, 54 Bte. B1.55.03 - 1200 Bruxelles, Belgique (1)
Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U1258/CNRS UMR 7104/Université de Strasbourg, Illkirch, France (1)
Neurodegenerative Diseases Research Group, Korea Brain Research Institute (1)
1Department of Molecular Neurosciences, Center for Brain Research, Medical University of Vienna, 13 Vienna, Austria (1)
Goethe University Frankfurt, University Hospital, Clinic of Neurology, Experimental Neurology, Heinrich- Hoffmann-Str. 7, 60528 Frankfurt am Main, Germany (1)

Previous page
1 / 1228
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 1228
Next page

Sort by:

Relevance

Page size

Metabolomic signature of mouse cerebral cortex following Toxoplasma gondii infection

BACKGROUND: The protozoan parasite Toxoplasma gondii infects and alters the neurotransmission in cerebral cortex and other brain regions, leading to neurobehavioral and neuropathologic changes in humans and animals. However, the molecules that contribute to these changes remain l...

2020-04-23 | MTBLS770 | MetaboLights

Transcription profiling of human prefrontal cortex during postnatal development

Fresh frozen post mortem prefrontal cortex tissue (Brodman area 46) was obtained from 44 individuals varying in age from 0 to 49 years. RNA was extracted from these samples and hybridized to HG133plus2.0 GeneChips. The data was used to examine patterns of gene expression over the course of human pos...

ORGANISM(S): Homo sapiens

2009-12-02 | E-GEOD-13564 | biostudies-arrayexpress

Transcription profiling of mouse P18, P24, P46, P104, and P46DR (dark reared) non-deprived vs. deprived visual cortex (GEO Super Series)

This SuperSeries is composed of the following subset Series:; GSE4263: P18 mouse non-deprived vs. deprived visual cortex; GSE4264: P24 mouse non-deprived vs. deprived visual cortex; GSE4265: P46 mouse non-deprived vs. deprived visual cortex; GSE4266: P104 mouse non-deprived vs. deprived visual corte...

ORGANISM(S): Mus musculus

2008-06-13 | E-GEOD-4269 | biostudies-arrayexpress

Transcription profiling of mouse P104 non-deprived vs. deprived visual cortex

Wild-type (C57Bl6) mice underwent monocular enucleation at P100 and were sacrificed 4 days later at P104. Bilateral (non-deprived and deprived) visual cortex was dissected from 1-mm thick coronal sections, and total RNA was extracted from the tissue lysate using Trizol (Gibco-BRL). Experiment Overal...

ORGANISM(S): Mus musculus

2008-06-13 | E-GEOD-4266 | biostudies-arrayexpress

Transcription profiling of mouse visual cortex from P46 mouse non-deprived vs. deprived

Wild-type (C57Bl6) mice underwent monocular enucleation at P42 and were sacrificed 4 days later at P46. Bilateral (non-deprived and deprived) visual cortex was dissected from 1-mm thick coronal sections, and total RNA was extracted from the tissue lysate using Trizol (Gibco-BRL). Experiment Overall ...

ORGANISM(S): Mus musculus

2008-06-13 | E-GEOD-4265 | biostudies-arrayexpress

Transcription profiling of mouse P24 animals non-deprived vs. deprived visual cortex

Wild-type (C57Bl6) mice underwent monocular enucleation at P20 and were sacrificed 4 days later at P24. Bilateral (non-deprived and deprived) visual cortex was dissected from 1-mm thick coronal sections, and total RNA was extracted from the tissue lysate using Trizol (Gibco-BRL). Experiment Overall ...

ORGANISM(S): Mus musculus

2008-06-13 | E-GEOD-4264 | biostudies-arrayexpress

Transcription profiling of mouseP46DR dark reared mouse non-deprived vs. deprived visual cortex

Wild-type (C57Bl6) mice were dark reared from birth to P42, then underwent monocular enucleation at P42. They were then placed in a normal light-dark environment for 4 days, after which they were sacrificed (at P46). Visual cortex was dissected from 1-mm thick coronal sections, and total RNA was ext...

ORGANISM(S): Mus musculus

2008-06-13 | E-GEOD-4267 | biostudies-arrayexpress

Transcription profiling of mouse visual cortex from wild type animals sacrificed at P18 after mononuclear enucleation

Wild-type (C57Bl6) mice underwent monocular enucleation at P14 and were sacrificed 4 days later at P18. Bilateral (non-deprived and deprived) visual cortex was dissected from 1-mm thick coronal sections, and total RNA was extracted from the tissue lysate using Trizol (Gibco-BRL). Experiment Overall ...

ORGANISM(S): Mus musculus

2008-06-13 | E-GEOD-4263 | biostudies-arrayexpress

Microarray analysis of mRNAs enriched in the vegetal cortex of Xenopus oocytes

RNA localization is a fundamental mechanism for controlling the spatial regulation of protein synthesis within cells, as well as differential cell fates during early development. Localized RNAs are known to control critical aspects of early Xenopus development, but few have been studied in detail. W...

ORGANISM(S): Xenopus laevis

2009-12-30 | E-GEOD-17713 | biostudies-arrayexpress

Transcriptomics Responses to Hypoxia and Ketamine in Ovine Fetal Cerebral Cortex

Transient hypoxia in pregnancy stimulates a physiological reflex response that redistributes blood flow and defends oxygen delivery to the fetal brain. The chemoreceptor reflex that is responsible for this physiological response is dependent on glutamatergic neurotransmission which, in times of vig...

ORGANISM(S): Ovis aries

2016-04-06 | E-GEOD-76110 | biostudies-arrayexpress

Previous page
1 / 1228
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 1228
Next page

Sort by:

Relevance

Page size

12278 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Modification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets