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TranscriptomicsGene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence
We use RNA sequencing technology in a time course study to measure transcript abundance from three developmental stages in cotyledons and five stages in the trifoliate leaf of Glycine max to identify genes with distinct temporal patterns of expression during leaf or cotyledon development. We also ex...
ORGANISM(S): Glycine max 
2015-05-01 | E-GEOD-61857 | biostudies-arrayexpress
ProteomicsProteome Analysis of rapeseed Cotyledons to Light
Among multiple factors, light plays a decisive role in the switch from heterotrophic to autotrophic growth. Under dark condition, the rapeseed hypocotyl extended quickly with an apical hook, yellow and folded cotyledon, and the glyoxysome assembling. Whereas under light, the hypocotyl extended slowl...
ORGANISM(S): Brassica napus (Rape) 
2017-09-14 | PXD003464 | Pride
Cotyledons Brassica napus Postgerminative seedling establishment Amino acids Light 
ProteomicsGUN1 controls the accumulation of NEP-dependent transcripts in Arabidopsis cotyledons
GUN1 proteins controls protein homeostasis in chloroplast development in cotyledons of the model plant Arabidopsis thaliana, via coordination of nuclear encoded polymerase (NEP)-dependent chloroplast genes expression with plastid encoded polymerase (PEP)-dependent chloroplast genes expression. Lack ...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-11-15 | PXD015078 | Pride
Arabidopsis thaliana Single column Q-exactive hf Cotyledons Chloroplast transit peptide (ctp) Nuclear-encoded chloroplast-targeted Gun1 protein 
ProteomicsThe role of the cotyledons after germination/during seedling development in Lupinus albus
The protein crop Lupinus albus stores large amounts of protein in the cotyledons. During epigeal germination the cotyledons emerge from the ground and become photosynthetically active. Proteome and metabolite profiles of the cotyledons demonstrate that (nitrogen) resource allocation from the cotyled...
ORGANISM(S): Lupinus albus 
2025-04-15 | PXD054416 | Pride
Lupinus albus Shotgut proteomics Seedling establishment Germination Lupin Cotyledon 
TranscriptomicsRNA-seq of seven stages of soybean cotyledon development
To understand the genetic mechanisms involved in the functional transition of cotyledons from non-photosynthetic storage tissue to metabolically active photosynthetic tissue during soybean seedling development, we constructed seven different RNA-Seq libraries using cotyledons from each developmental...
ORGANISM(S): Glycine max 
2014-07-29 | E-GEOD-42550 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiles of Arabidopsis stomataless mutants
Stomataless Arabidopsis thaliana mutants spch-3 and mute-3 are extreme dwarfs but can produce cotyledons and tiny leaves, providing a system to interrogate plant life in the absence of stomata. To this end, we compared the transcriptomes of mutant cotyledons lacking SPCH or MUTE functions, and there...
ORGANISM(S): Arabidopsis thaliana 
2015-07-02 | E-MTAB-3416 | biostudies-arrayexpress
GenomicsAnalysis of soybean DNA methylomes shows CHH hypermethylation enhances gene expression in cotyledons of developing seeds [methylome]
Cytosine methylation is an important mechanism for dynamical regulation of gene expression and transposon mobility during plant developmental processes. Recently, the variation of DNA methylation has been described between wild type and DNA methylation-related mutants in Arabidopsis thaliana. Howeve...
ORGANISM(S): Glycine max 
2012-10-30 | E-GEOD-34849 | biostudies-arrayexpress
TranscriptomicsAnalysis of soybean DNA methylomes shows CHH hypermethylation enhances gene expression in cotyledons of developing seeds [mRNA]
Cytosine methylation is an important mechanism for dynamical regulation of gene expression and transposon mobility during plant developmental processes. Recently, the variation of DNA methylation has been described between wild type and DNA methylation-related mutants in Arabidopsis thaliana. Howeve...
ORGANISM(S): Glycine max 
2012-10-30 | E-GEOD-34852 | biostudies-arrayexpress
TranscriptomicsAnalysis of soybean DNA methylomes shows CHH hypermethylation enhances gene expression in cotyledons of developing seeds [small RNA]
Cytosine methylation is an important mechanism for dynamical regulation of gene expression and transposon mobility during plant developmental processes. Recently, the variation of DNA methylation has been described between wild type and DNA methylation-related mutants in Arabidopsis thaliana. Howeve...
ORGANISM(S): Glycine max 
2012-10-30 | E-GEOD-34853 | biostudies-arrayexpress
GenomicsTranscriptome profiles of etiolated cotyledons exposed to ABA during seedling deetiolation.
Transcriptome profiles of etiolated cotyledons exposed to ABA during seedling deetiolation.
PRJNA1142581 | ENA
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