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TranscriptomicsncRNA termination in Saccharomyces cerevisiae
Nuclear depletion of the essential transcription termination factor Nrd1 in Saccharomyces cerevisiae was studied using a combination of RNA-Seq, ChIP-Seq of Pol II and PAR-CLIP of Nrd1. The drug rapamycin induces the formation of a ternary complex between a protein of interest, the drug and the smal...
ORGANISM(S): Saccharomyces cerevisiae 
2013-11-14 | E-MTAB-1766 | biostudies-arrayexpress
TranscriptomicsDynamic transcriptome analysis reveals mRNA synthesis and decay in yeast
To obtain rates of mRNA synthesis and decay in yeast, we established dynamic transcriptome analysis (DTA). DTA combines non-perturbing metabolic RNA labeling with dynamic kinetic modeling. DTA was used to monitor the cellular response to osmotic stress in comparison to the wild type. Genomic occupa...
ORGANISM(S): Saccharomyces cerevisiae 
2011-11-01 | E-MTAB-439 | biostudies-arrayexpress
TranscriptomicsFive Omic Technologies Are Concordant in Differentiating the Biochemical Characteristics of the Berries of Five Grapevine (Vitis vinifera L.) Cultivars
Background: Grape cultivars and wines are distinguishable by their color, flavor and aroma profiles. Omic analyses (transcripts, proteins and metabolites) are powerful tools for assessing biochemical differences in biological systems. Results: Berry skins of red- (Cabernet Sauvignon, Merlot, Pinot ...
ORGANISM(S): Vitis vinifera 
2015-11-12 | E-GEOD-72421 | biostudies-arrayexpress
ProteomicsVvinifera L. - Shoot, NSAF (Crameretal,bmcplantbiol2013)
abundance based on NSAF, Interaction consistency score: 11.1, Coverage: 8
ORGANISM(S): 29760 
2013-00-00 | 1323817045 | PAXDB
ProteomicsVvinifera L. - Shoot, NSAF (Crameretal,bmcplantbiol2013)
abundance based on NSAF, Interaction consistency score: 9.5, Coverage: 8
ORGANISM(S): 29760 
2013-00-00 | 3382834283 | PAXDB
ProteomicsMulti-omics analysis of plasma in atrial fibrillation patients
Comprehensive metabolomic and proteomic analyses reveal candidate biomarkers and related metabolic networks in atrial fibrillation.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-05-14 | MSV000083774 | MassIVE
ProteomicsVvinifera L. - Exocarp, NSAF (Ghanetal,bmcgenomics2015)
abundance based on NSAF, Interaction consistency score: 4.9, Coverage: 4
ORGANISM(S): 29760 
2015-00-00 | 1114792907 | PAXDB
ProteomicsVvinifera L. - Exocarp, NSAF (Ghanetal,bmcgenomics2015)
abundance based on NSAF, Interaction consistency score: 3.6, Coverage: 4
ORGANISM(S): 29760 
2015-00-00 | 640752059 | PAXDB
ProteomicsVvinifera L. - Exocarp, NSAF (Ghanetal,bmcgenomics2015)
abundance based on NSAF, Interaction consistency score: 4.9, Coverage: 4
ORGANISM(S): 29760 
2015-00-00 | 2450775963 | PAXDB
ProteomicsVvinifera L. - Exocarp, NSAF (Ghanetal,bmcgenomics2015)
abundance based on NSAF, Interaction consistency score: 4.3, Coverage: 4
ORGANISM(S): 29760 
2015-00-00 | 3934223406 | PAXDB
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