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MetabolomicsNMR-based Metabolomics for CRC Diagnosis
Not available
ORGANISM(S): Homo sapiens 
ST000285 | MetabolomicsWorkbench
TranscriptomicsRNA-seq from paired human CRC/control mucosa samples
We have used RNA-seq to examine gene expression from paired human CRC/control mucosa samples and identified CRC-specific expressed long noncoding RNAs To identify CRC-specific expressed genes, including long noncoding RNAs
ORGANISM(S): Homo sapiens 
2014-02-22 | E-GEOD-55259 | biostudies-arrayexpress
TranscriptomicsThe Pseudomonas fluorescens Crc affects the length of the transition phase during diauxic growth
Pseudomonads, unlike enteric bacteria, prefer to utilize tricarboxylic acid cycle intermediates over glucose. The crc gene has been implicated to impart repression on glucose and other metabolic enzymes in various Pseudomonas species when grown in a mixture of glucose and various organic acids. The...
ORGANISM(S): Pseudomonas fluorescens 
2010-06-19 | E-GEOD-5829 | biostudies-arrayexpress
ProteomicsHuman CRC cell line baseline phosphoproteomics
There is a need for robust phosphopeptide enrichment methods to allow signaling network analysis in cancer cell lines and tissues with minimal fractionation. With recent instrument developments thousands of unique phosphopeptides can be detected by single-shot LC-MS/MS. However, successful phosphopr...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-29 | MSV000080788 | MassIVE
ProteomicsQuantitative proteomics analysis of paired colorectal cancer and non-tumorigenic tissues reveal proteins and pathways perturbed in colorectal cancer
Proteomics is a dynamic field emerged dramatically the post genomic era which has been extensively employed to study altered protein expression to gain insight into the development process and pathways involved in cancer and uncover potential protein markers. Membrane proteomes of an expanded cohort...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-06-16 | MSV000079828 | MassIVE
TranscriptomicsCRC cells_Aspirin treatment_48 hours_Rep8
To identify the lncRNA profiles of colorectal carcinoma cells treated with aspirin, we performed microarray analysis using primary cultured cancer cells obtained from 8 clinical CRC tissues. After the CRC cells were treated with aspirin for 48 hours, 28 lncRNAs were statistically up-regulated more t...
ORGANISM(S): Homo sapiens 
2016-01-07 | E-GEOD-76583 | biostudies-arrayexpress
TranscriptomicsS100P, a calcium-binding protein, is associated with polypoid tumour growth in colorectal carcinogenesis
Colorectal cancer (CRC) is a genetically heterogeneous disease with several distinct morphological growth patterns. This study was aimed to investigate genes differentially expressed between ulcerative and polypoid colorectal CRC. cDNA microarray was first employed to compare the gene expression pr...
ORGANISM(S): Homo sapiens 
2013-05-16 | E-GEOD-46905 | biostudies-arrayexpress
TranscriptomicsInfluence of Slug/SNAI2 on global gene expression in CRC cells and tumors
To establish the role of Slug in CRC, we created a genetic CRC model for Slug expression. As parental cells, we selected HT-29 cells that display a pronounced epithelial phe-notype. HT-29 cells were transfected with Slug, and two stable Slug-expressing clones. (Slug1, Slug2) were isolated. As transf...
ORGANISM(S): Mus musculus 
2022-06-11 | E-MTAB-11812 | biostudies-arrayexpress
GenomicsPseudomonas protegens strain:Crc-1
Pseudomonas protegens Crc-1 transcriptome - Crc-1_8
PRJNA538142 | ENA
GenomicsPseudomonas protegens strain:Crc-1
Pseudomonas protegens Crc-1 transcriptome - Crc-1_6
PRJNA538140 | ENA
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