Crl - OmicsDI

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Unknown (1269)
Transcriptomics (927)
Genomics (316)
Proteomics (159)
Metabolomics (28)
Methylation profiling (2)
Models (1)
Genomic (1)
Other (1)

Organisms

Homo sapiens (359)
Arabidopsis thaliana (281)
Mus musculus (173)
Rattus norvegicus (110)
Drosophila melanogaster (23)
Staphylococcus aureus (9)
Gallus gallus (8)
Escherichia coli (7)
Caenorhabditis elegans (6)
Danio rerio (6)
Erwinia amylovora (3)
Severe acute respiratory syndrome coronavirus 2 (2)
Pimephales promelas (2)
Staphylococcus aureus subsp. aureus COL (2)
Schistosoma mansoni (2)
Listeria monocytogenes (2)
Cricetulus griseus (2)
Saccharomyces cerevisiae (2)
Vesicular stomatitis Indiana virus (1)
Pomacentrus moluccensis (1)
Thermoanaerobacter sp. X514 (1)
Helianthus annuus (1)
Vitis riparia (1)
Bartonella koehlerae (1)
Ciona intestinalis (1)
Lupinus angustifolius (1)
Bacteroides thetaiotaomicron VPI-5482 (1)
Pan troglodytes (1)
Saccharina latissima (1)
Sorghum bicolor (1)

Organisms

Homo sapiens (94)
Mus musculus (42)
Rattus norvegicus (21)
Escherichia coli (3)
Arabidopsis thaliana (3)
Latilactobacillus curvatus CRL 705 (2)
Lactiplantibacillus plantarum (2)
Drosophila melanogaster (2)
Puccinia graminis f. sp. tritici CRL 75-36-700-3 (1)
Fructobacillus sp. CRL 2054 (1)
Lactobacillus delbrueckii subsp. lactis CRL581 (1)
Loigolactobacillus coryniformis subsp. coryniformis (1)
Myotis gammaherpesvirus 8 (1)
Lactiplantibacillus paraplantarum (1)
Enterococcus lactis (1)
Mus musculus homourus (1)
Limosilactobacillus reuteri (1)
Escherichia coli K-12 (1)
rat gut metagenome (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Salmo salar (1)
rat metagenome (1)
Klebsiella aerogenes (1)
Fructobacillus tropaeoli (1)
unidentified (1)
Enterobacter cloacae (1)
Equus caballus (1)
Danio rerio (1)
Pseudomonas aeruginosa PAO1 (1)
Limosilactobacillus fermentum (1)

Repository

biostudies-arrayexpress (952)
ENA (236)
pride (103)
geo (61)
MassIVE (31)
MetaboLights (27)
jPOST (11)
iProX (7)
EGA (3)
PeptideAtlas (3)
BioModels (1)
dbGaP (1)
GNPS (1)
NODE (1)
PAXDB (1)

Tissue

Cell culture (35)
Epithelial cell (9)
Cell line cell (8)
UWB1.289 cell (6)
Permanent cell line cell (6)
Fibroblast (5)
Brain (4)
Hepatocyte (3)
Liver (3)
Plasma Non-glyco (2)
T-47D cell (2)
K-562 cell (2)
HepG2 cell (2)
HEK-293 cell (2)
Placenta (2)
Embryonic stem cell (2)
Lung (2)
Kidney (2)
B cell (2)
Colon (2)
Cell line (1)
Others (1)
HCC-70 cell (1)
UWB1.289+BRCA1 cell (1)
Non-small cell lung cancer cell (1)
Kidney proximal straight tubule epithelial cell (1)
Vascular associated smooth muscle cell (1)
Inner medullary collecting duct (1)
Skeletal muscle myoblast (1)
Embryonic fibroblast (1)

Disease

Normal (3)
Melanoma (3)
Disease free (3)
Malignant melanoma (2)
Osteosarcoma (2)
Type 2 diabetes mellitus (2)
Breast cancer (2)
COVID-19 (1)
Radiation-induced DNA damage (1)
NTN (1)
Xenografts with H1299 cell line (1)
Prostate carcinoma (1)
Adenocarcinoma (1)
Coronary restenosis (1)
Endocervical adenocarcinoma (1)
Toxoplasmosis (1)
Non-small cell lung carcinoma (1)
Plasmodium falciparum malaria (1)
Prostate adenocarcinoma (1)
Lymphoma (1)
Chronic myeloid leukemia (1)
Brain cancer (1)
Alzheimer's disease (1)
Renal cell carcinoma (1)
Glioblastoma (1)

Technology Type

Mass Spectrometry (103)
Shotgun proteomics (60)
Mass spectrometry (21)
Bottom-up proteomics (19)
Data-dependent acquisition (11)
Affinity purification coupled with mass spectrometry proteomics (11)
Data-independent acquisition (8)
Gel-based experiment (5)
Mass spectrometry assay (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
HDMSE (3)
SWATH MS (3)
SRM/MRM (3)
NMR spectroscopy (2)
MSE (2)
All-ion fragmentation (2)
Affinity proteomics (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 500 (27)
Illumina HiSeq 2500 (21)
Illumina NovaSeq 6000 (18)
NextSeq 2000 (17)
HiSeq X Ten (17)
Illumina HiSeq 4000 (14)
Illumina HiSeq 2000 (13)
Illumina HiSeq 3000 (10)
PromethION (6)
Agilent 2100 Bioanalyzer (5)
Illumina MiSeq (5)
Illumina NovaSeq X (4)
DNBSEQ-G400 (4)
Illumina Genome Analyzer II (3)
Ribo-Zero Gold (Illumina) (2)
TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold (Illumina) (2)
Illumina Genome Analyzer IIx (2)
GenePix 4000B [Axon Instruments] (2)
Illumina (2)
MiRNeasy Serum/Plasma Advanced Kit (1)
DNA Genotek collection tubes (Ref CP-190) (1)
10X (1)
Octo MACS (1)
Element AVITI (1)
GeneChip Scanner 2500 (1)
MACS (1)
Illumina Beadstaition (1)
Conviron controlled environment chamber (1)
Illumina Hiscan (1)
GenePix Personal 4100A [Axon Instruments] (1)

Publication Date

2011 (113)
2014 (109)
2010 (106)
2013 (92)
2015 (84)
2012 (84)
2025 (64)
2009 (63)
2008 (57)
2016 (51)
2023 (50)
2021 (45)
2020 (42)
2026 (41)
2022 (41)
2024 (39)
2019 (29)
2018 (29)
2007 (19)
2017 (15)
2005 (9)
2004 (8)
2006 (5)
2003 (1)

UNIPROT ID/AC

PTSO_ECOLI (1)
FLIC_ECOLI (1)
YEEY_ECOLI (1)
THIM_ECOLI (1)
THIG_ECOLI (1)
THIC_ECOLI (1)
TTDA_ECOLI (1)
DMSA_ECOLI (1)
CASC_ECOLI (1)
THIE_ECOLI (1)
FEPE_ECOLI (1)
HOFQ_ECOLI (1)
IF2_ECOLI (1)
YKGF_ECOLI (1)
MCP1_ECOLI (1)
RL34_ECOLI (1)
AAEB_ECOLI (1)
PSPE_ECOLI (1)
THID_ECOLI (1)
YAHF_ECOLI (1)
THIS_ECOLI (1)
MDH_ECOLI (1)
RNK_ECOLI (1)
PHNK_ECOLI (1)
FUCK_ECOLI (1)
NARG_ECOLI (1)
UBIU_ECOLI (1)
T1RK_ECOLI (1)
CHEW_ECOLI (1)
ARAG_ECOLI (1)

ENSEMBL ID

ENSG00000170477 (3)
ENSG00000247315 (2)

CHEBI ID

CHEBI:16704 (9)
CHEBI:16335 (8)
CHEBI:28044 (8)
CHEBI:16750 (7)
CHEBI:16828 (6)
CHEBI:15891 (6)
CHEBI:30769 (6)
CHEBI:17596 (6)
CHEBI:15428 (6)
CHEBI:15741 (6)
CHEBI:17368 (6)
CHEBI:30915 (6)
CHEBI:16857 (5)
CHEBI:28842 (5)
CHEBI:17895 (5)
CHEBI:16643 (5)
CHEBI:17295 (5)
CHEBI:15603 (5)
CHEBI:17203 (5)
CHEBI:18132 (5)
CHEBI:17268 (5)
CHEBI:18012 (5)
CHEBI:15756 (5)
CHEBI:17568 (5)
CHEBI:16040 (5)
CHEBI:16856 (5)
CHEBI:16264 (5)
CHEBI:6650 (5)
CHEBI:16737 (5)
CHEBI:26271 (5)

Metabolite Name

Hypoxanthine (7)
Adenosine (6)
Phenylalanine (5)
Adenine (5)
Taurine (5)
Inosine (5)
Uridine (5)
Succinic acid (4)
Methionine (4)
Alanine (4)
Proline (4)
Uracil (4)
Cytosine (4)
L-Phenylalanine (4)
Cytidine (4)
Guanosine (4)
Lactic acid (3)
Leucine (3)
Pantothenic acid (3)
L-Tyrosine (3)
Fumaric acid (3)
Arachidonic acid (3)
Citric acid (3)
Arginine (3)
Tryptophan (3)
Asparagine (3)
Tyrosine (3)
Serine (3)
Uridine (3)
Guanosine (3)

First Public Date

2014 (40)
2024 (25)
2023 (24)
2021 (20)
2018 (19)
2025 (16)
2026 (15)
2017 (15)
2022 (14)
2020 (14)
2019 (13)
2016 (8)
2015 (7)
2013 (5)
2012 (1)

Modelling Approach

Population model (1)

Lab affiliation

Cellzome (8)
Technology and development department, Centro de Referencia para Lactobacillus (CERELA-CONICET), San Miguel de Tucumán, Tucumán, Argentina (2)
University of Dundee, Scool of Life Sciences, Department of Molecular, Cellular andDevelopmental biology (2)
King's College London, Chemistry Department, 7 Trinity Street, London, SE1 1DB, UK (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 NeuchÃƒÂ¢tel, Switzerland (part of Philip Morris International group of companies) (2)
Yale University School of Medicine (2)
Professor (2)
ETH Zürich Institute of Molecular Systems Biology Otto-Stern-Weg 3 8093 Zürich Switzerland (2)
Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), PO Box 8905, N-7491, Trondheim, Norway Phone: +47 72573075, Fax: +47 72576400 (2)
Mass Spectrometry Core, Van Andel Institute, Grand Rapids, MI, USA (1)
Department of Pharmaceutical Sciences, School of Pharmacy and Pharmaceutical Sciences, University at Buffalo, USA (1)
Department of Biology, York University, Toronto, Ontario, Canada (1)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3 (1)
(1) German Center for Neurodegenerative Diseases (DZNE), 72076 Tübingen, Germany (2) University of Tübingen, Center for Ophthalmology, Institute for Ophthalmic Research, 72074 Tübingen, Germany (1)
Department of Chemistry, University of Wisconsin-Madison, United States (1)
Medical University of Bialystok (1)
Dipartimento di Medicina Veterinaria, Università degli Studi di Milano, Milano; Italy (1)
Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Cd. Universitaria, Coyoacán, Ciudad de México, México (1)
Technichal University in Munich (1)
Developmental and Cell Biology University of California, Irvine Irvine, California, USA (1)
Pilot Laboratory, Institute of Translational Medicine, Centre for Precision Medicine Research and Training, Faculty of Health Sciences, University of Macau, Macau, China (1)
V.L. Talrose Institute for Energy Problems of Chemical Physics, N.N. Semenov Federal Research Center of Chemical Physics RAS (1)
Functional Proteomics Laboratory Department of Science and Technology Federal University of São Paulo (ICT-UNIFESP) São José dos Campos, São Paulo, Brazil Rua Talim, 330, 12231-280; Tel +55 11 3385-4135 ext. 9727. (1)
Laboratory of Technology, Centro de Referencia para Lactobacilos (CERELA-CONICET), Tucumán, Argentina (1)
Immonolgy and cell biology department, université de sherbrooke (1)
CECAD Research Center, University of Cologne, Cologne; Germany (1)
Department of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, MI 48202 (1)
Department of Biochemistry, Western University (1)
Radboud Center for Mitochondrial Medicine, Department of Paediatrics, Radboudumc, Nijmegen, The Netherlands (1)
National Institute of Occupational Health, Pb 8149 Dep, N-0033, Oslo, Norway (1)

IsPrivate

False (1)

Submitter Keywords

COVID-19 (1)

Classification

bacteria (9)
viruses (1)

Modification

4'-dihydroxyphenylalanine (1)

Study type

Transcription profiling by array (577)
RNA-seq of coding RNA (124)
ChIP-seq (30)
Genotyping by high throughput sequencing (30)
DNA-seq (28)
ChIP-chip by tiling array (21)
Comparative genomic hybridization by array (19)
Methylation profiling by high throughput sequencing (13)
Methylation profiling by array (12)
RNA-seq of non coding RNA (11)
Other (10)
Unknown experiment type (9)
Transcription profiling by tiling array (8)
Cell line - High-throughput sequencing (7)
ChIP-chip by array (7)
RNA-seq of coding RNA from single cells (7)
MNase-seq (6)
RNA-seq of total RNA (6)
Animal - High-throughput sequencing (3)
Plant - High-throughput sequencing (2)
RNAi profiling by array (2)
Genotyping by array (2)
CLIP-seq (2)
Transcription profiling by RT-PCR (2)
MicroRNA profiling by array (2)
Proteomic profiling by array (2)
Animal - One-color microarray (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
Antigen profiling (1)

Release Date

2024 (625)
2014 (133)
2015 (120)
2010 (117)
2011 (116)
2021 (105)
2013 (100)
2012 (97)
2023 (95)
2022 (94)
2025 (92)
2020 (85)
2019 (73)
2016 (73)
2009 (63)
2008 (60)
2018 (54)
2017 (47)
2026 (26)
2007 (21)
2005 (10)
2004 (7)
2006 (6)
2003 (1)
2002 (1)

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Transcription profiling of stationary phase E.coli wild type and crl::cat mutant strains to identify Crl-regulated genes

We wished to identify Crl-regulated genes in stationary phase in E.coli, and whether those overlap with the previously identified regulon of RpoS. Therefore wildtype E.coli (MC4100) and its isogenic crl::cat mutant were grown at 30oC. Total RNA was extracted at on OD (578nm) of 4 (during entry into ...

ORGANISM(S): Escherichia coli

2007-01-01 | E-MEXP-720 | biostudies-arrayexpress

Levilactobacillus brevis strain:CRL 2013

Levilactobacillus brevis strain:CRL 2013 Genome sequencing and assembly

PRJNA378171 | ENA

Lacticaseibacillus rhamnosus strain:CRL 2244

Lacticaseibacillus rhamnosus strain:CRL 2244 Genome sequencing and assembly

PRJNA1008284 | ENA

Latilactobacillus curvatus CRL 705

Latilactobacillus curvatus CRL 705 Genome sequencing and assembly

PRJNA71471 | ENA

Fructobacillus sp. CRL 2054

Fructobacillus sp. CRL 2054 Genome sequencing and assembly

PRJNA657294 | ENA

Limosilactobacillus reuteri strain:CRL 1098

Limosilactobacillus reuteri strain:CRL 1098 Genome sequencing and assembly

PRJNA323635 | ENA

Fructobacillus tropaeoli strain:CRL 2034

Fructobacillus tropaeoli strain:CRL 2034 Genome sequencing and assembly

PRJNA587125 | ENA

cdt1_bis; Transcriptome comparison of the crl mutant and CDT1-RNAi line

au13-04_cdtbis; cdt1_bis crl mutants and CDT1-RNAi lines have very similar macroscopic phenotypes as well as identical defects in plastid division and biogenesis. Our goal wwas to determine how much of these similarities originated from similar alterations of gene expression. Plantlets of crl mutan...

ORGANISM(S): Arabidopsis thaliana

2013-09-01 | E-GEOD-48465 | biostudies-arrayexpress

Loigolactobacillus coryniformis subsp. coryniformis strain:CRL 1001

Loigolactobacillus coryniformis subsp. coryniformis strain:CRL 1001 Genome sequencing and assembly

PRJNA304089 | ENA

Latilactobacillus curvatus CRL 705

Lactobacillus curvatus Genome sequencing and assembly

PRJNA390867 | ENA

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2708 Results

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