Crop yield - OmicsDI

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Unknown (9341)
Genomics (1103)
Transcriptomics (243)
Proteomics (95)
Metabolomics (32)
Other (5)
Methylation profiling (4)

Organisms

Oryza sativa (44)
Arabidopsis thaliana (42)
Zea mays (32)
Oryza sativa Japonica Group (18)
Solanum lycopersicum (13)
Triticum aestivum (13)
Glycine max (12)
Brassica napus (12)
Hordeum vulgare (11)
Solanum tuberosum (8)
Gossypium hirsutum (7)
Vigna subterranea (4)
Brachypodium distachyon (3)
Boehmeria nivea (3)
Allium cepa (2)
Brassica rapa (2)
Hordeum vulgare subsp. vulgare (2)
Agaricus bisporus (2)
Hevea brasiliensis (2)
Saccharum hybrid cultivar (mixed) (2)
Pyrus communis (2)
Helianthus annuus (2)
Capsicum annuum (2)
Oryza sativa Indica Group (2)
Lathyrus sativus (1)
Manihot esculenta subsp. peruviana (1)
Gossypium tomentosum (1)
Vigna unguiculata (1)
Pinus radiata (1)
Brassica juncea (1)

Organisms

Oryza sativa (49)
Arabidopsis thaliana (38)
soil metagenome (34)
Zea mays (26)
Triticum aestivum (18)
Glycine max (16)
Brassica napus (14)
Solanum lycopersicum (12)
Hordeum vulgare (11)
Oryza sativa Japonica Group (11)
Mus musculus (9)
Nicotiana tabacum (5)
Cucumis sativus (5)
Ipomoea batatas (5)
Corchorus olitorius (4)
unidentified (4)
Oryza sativa Indica Group (4)
Vitis vinifera (4)
Manihot esculenta (4)
Gossypium hirsutum (4)
Sorghum bicolor (4)
Oryza (3)
Arachis hypogaea (3)
Arabidopsis (3)
Hevea brasiliensis (3)
Solanum tuberosum (3)
Panicum virgatum (3)
Bacillus velezensis (3)
Vigna subterranea (2)
Boehmeria nivea (2)

Repository

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geo (190)
biostudies-arrayexpress (89)
pride (57)
MetaboLights (30)
iProX (22)
MassIVE (8)
PAXDB (7)
EVA (3)
GNPS (2)
jPOST (1)

Tissue

Leaf (21)
Plant cell (18)
Root (13)
Seed (5)
Anther (3)
Embryo (3)
Endosperm (2)
Photosynthetic cell (2)
Seed coat (2)
Shoot (2)
Basal node (1)
Basidiospore (1)
Cell culture (1)
Corn silk (1)
Crop (1)
Digestive gland (1)
Flower (1)
Gametophore (1)
Intestine (1)
Latex (1)
Ovary (1)
Pollen (1)
Protonema (1)
Salivary gland (1)
Seedling (1)
Tuberous root (1)
Whole body (1)

Disease

Acute leukemia (1)
Disease free (1)
Sodium salt (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (57)
Shotgun proteomics (40)
Mass spectrometry (19)
Mass spectrometry assay (11)
Gel-based experiment (8)
Bottom-up proteomics (7)
Data-dependent acquisition (7)
Top-down proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
Mass spectrometry imaging (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (11)
Liquid Chromatography MS - negative - reverse phase (10)
Illumina NovaSeq 6000 (8)
Illumina HiSeq 2000 (7)
Gas Chromatography MS - positive (4)
Liquid Chromatography MS - positive - reverse-phase (4)
Liquid Chromatography MS - negative - reverse-phase (4)
- (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Macrogen (2)
Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice (2)
Illumina Genome Analyzer II (2)
Illumina HiSeq 2500 (2)
Clarus SQ 8S Mass Spectrometer (2)
LC: Waters Acquity UPLC system (2)
MS: Waters Xevo G2-XS Q-TOF-MS (2)
Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice/ Thermo Fisher Scientific (1)
Agilent G2505B (1)
Agilent G2505B scanner (1)
Illumina Genome Analyzer IIx (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap XL (1)
MALDI-TOF MS Analyzer (Bruker, Germany) (1)
Orbitrap Fusion (1)
Q Exactive (1)
Q Exactive Plus (1)
Liquid Chromatography MS – negative - reverse phase (1)
Thermo Trace GC PolarisQ (1)
Gas Chromatography MS - - - Liquid Chromatography MS - - - Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating (1)

Publication Date

2026 (47)
2025 (39)
2023 (37)
2020 (32)
2022 (31)
2016 (31)
2024 (28)
2021 (24)
2019 (22)
2013 (20)
2012 (18)
2018 (17)
2015 (15)
2014 (11)
2011 (11)
2017 (9)
2010 (9)
2008 (5)
2009 (2)
2007 (1)

UNIPROT ID/AC

4565.Traes_3B_4EFCCC882.1 (6)
4565.Traes_5BL_423673029.1 (6)
4565.Traes_5BL_45DF41500.1 (6)
4565.Traes_5BL_77F9DBF02.1 (6)
4565.Traes_5BS_A651F57B9.1 (6)
4565.Traes_5DL_11F618A4D.1 (6)
4565.Traes_5DL_89CF7F5DE.1 (6)
4565.Traes_6BL_B095FC217.1 (6)
4565.Traes_7DL_98846F89F1.1 (6)
A0A077RTG8_WHEAT (6)
A0A077RU01_WHEAT (6)
A0A077RXR6_WHEAT (6)
A0A077RXS4_WHEAT (6)
A0A077RXY9_WHEAT (6)
A0A077RY29_WHEAT (6)
A0A077S1G3_WHEAT (6)
A0A077S237_WHEAT (6)
A0A077S6B3_WHEAT (6)
A0A077S6R6_WHEAT (6)
A0A080YUX3_WHEAT (6)
A0A096UL77_WHEAT (6)
A0A0C4BIR6_WHEAT (6)
A0A0C4BIW4_WHEAT (6)
A0A0C4BJE5_WHEAT (6)
A0A0C4BK41_WHEAT (6)
A0A0C4BK54_WHEAT (6)
A0A0C4BKH5_WHEAT (6)
A0A0C4BKL3_WHEAT (6)
A0A1D5SG47_WHEAT (6)
A0A1D5SLI4_WHEAT (6)

CHEBI ID

CHEBI:17992 (8)
CHEBI:17620 (8)
CHEBI:30769 (8)
CHEBI:15741 (7)
CHEBI:16750 (7)
CHEBI:16335 (7)
CHEBI:16243 (6)
CHEBI:22660 (6)
CHEBI:9300 (6)
CHEBI:15676 (6)
CHEBI:16112 (6)
CHEBI:48131 (6)
CHEBI:16865 (6)
CHEBI:18300 (6)
CHEBI:18012 (6)
CHEBI:17596 (6)
CHEBI:17521 (5)
CHEBI:30754 (5)
CHEBI:30816 (5)
CHEBI:28527 (5)
CHEBI:26271 (5)
CHEBI:18186 (5)
CHEBI:16708 (5)
CHEBI:17924 (5)
CHEBI:16551 (5)
CHEBI:28044 (5)
CHEBI:32374 (5)
CHEBI:16566 (5)
CHEBI:30763 (5)
CHEBI:16704 (5)

Metabolite Name

Adenosine (9)
Adenine (8)
Caffeic acid (7)
L-Proline (7)
Guanosine (7)
Ferulic acid (6)
Uridine (6)
Sucrose (6)
D-Fructose (5)
D-Galactose (5)
Uracil (5)
Pyroglutamic acid (5)
Maleic acid (5)
L-Histidine (5)
Pantothenic acid (5)
Phenylalanine (5)
L-Tryptophan (5)
L-Glutamine (5)
Azelaic acid (5)
L-Serine (5)
D-Sorbitol (5)
L-Methionine (5)
Hypoxanthine (5)
Schidigeragenin B (4)
5-Methoxytryptamine (4)
Chlorogenic acid (4)
Palmitoyl glucuronide (4)
Quercetin (4)
3-O-p-Coumaroylquinic acid (4)
4-oxo-Retinoic acid (4)

First Public Date

2024 (149)
2026 (143)
2025 (141)
2013 (90)
2014 (87)
2023 (85)
2022 (69)
2020 (67)
2021 (63)
2018 (49)
2019 (42)
2016 (34)
2017 (31)
2015 (22)
2011 (1)

Classification

bacteria (6)

Study type

Transcription profiling by array (52)
RNA-seq of coding RNA (26)
RNA-seq of non coding RNA (4)
Genotyping by array (2)
Unknown experiment type (1)
MicroRNA profiling by high throughput sequencing (1)
Bisulfite-seq (1)
Comparative genomic hybridization by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (1388)
2023 (1248)
2025 (1234)
2024 (1044)
2021 (1024)
2020 (788)
2019 (619)
2018 (448)
2017 (406)
2016 (352)
2015 (254)
2014 (184)
2026 (123)
2013 (101)
2012 (89)
2011 (42)
2010 (23)
2008 (16)
2009 (12)
2007 (12)
2006 (8)
2002 (6)
2005 (4)
1999 (2)
2003 (1)
2000 (1)
1997 (1)

Lab affiliation

Mendel University in Brno (2)
Robert W. Holley Center for Agriculture and Health United States Department of Agriculture Agricultural Research Service (2)
University of Vienna (2)
1Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China. (1)
1Max Planck Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg1 D-14476, Potsdam-Golm, Germany. (1)
ARC Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, M316, Perth,WA, 6009, Australia (1)
Affiliation of Zhengting Chen, Jing Wang, Hebo Zhao, Yaping Yue, Biao Liu, Yu Zhao, Dao-Xiu Zhou: National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, 430070 Wuhan, China (1)
Agriculture and Agri-Food Canada (1)
Applied Proteomics Lab, Department of Biology, Maynooth University, Ireland. (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Central University of Punjab, Bathinda, India (1)
Central University of Punjab, Ghudda, Bathinda, India 151401 (1)
Centro de Biotecnología y Genómica de Plantas (CBGP) UPM-INIA/CSIC, Campus de Montegancedo. Autopista M40 (km 38). 28223 Madrid, Spain. (1)
College of Agriculture, Guizhou University, Guiyang, Guizhou, China (1)
College of Agronomy, Shandong Agricultural University, Tai’an, 271018 Shandong, China (1)
College of Biology, Hunan University (1)
College of Life Sciences, Capital Normal University No. 105 Xisanhuan North Road, Beijing 100048 P. R. China (1)
College of Life sciences, Heilongjiang University/Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region, China (1)
Cornell University (1)
Crop Genetics John Innes Centre Norfolk United Kingdom (1)
Departement of Ecogenomics and System Biology, Althanstrasse 14, 1090 Vienna, AUSTRIA (1)
Department of Life Science and Environmental Biochemistry, Life and Industry Convergence Research Institute, Pusan National University, Miryang 50463, Republic of Korea (1)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 50463, Republic of Korea (1)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (1)
Department of Plant Biosience, Pusan National University, Miryang 50463, Republic of Korea (1)
Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, B-9052, Belgium VIB Center for Plant Systems Biology, Ghent, B-9052, Belgium (1)
Director | ARC CoE Plant Energy Biology, The University of Western Australia (1)
Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education, Heilongjiang University, Harbin 150500, China (1)
Friedrich-Alexander-Universität Erlangen-Nürnberg, Division of Biochemistry, Erlangen, Germany (1)
Institute BIOTECMED / Department of Genetics, University of Valencia, Burjassot, Spain (1)

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Legume rhizodeposition promotes nitrogen fixation by soil microbiota under crop diversification

Biological nitrogen fixation by free-living bacteria and rhizobial symbiosis with legumes plays a key role in sustainable crop production. Here, we study how different crop combinations influence the interaction between peanut plants and their rhizosphere microbiota via metabolite deposition and ...

2024-03-19 | MTBLS6537 | MetaboLights

Effects of biodegradable Film Mulching on Yield, Grain Quality, and Soil Metabolic Characteristics of Water-Saving and Drought-Resistant Rice

This study investigates the metabolic changes in paddy soil subjected to three different rice cultivation treatments: non-flooded unmulched cultivation (UM), non-flooded biodegradable film mulching cultivation (BM), and traditional flooding cultivation (TF). Untargeted metabolomics analysis was perf...

2026-05-28 | MTBLS14587 | MetaboLights

Reducing the use of chemical fertilizers and improving crop salt stress tolerance by acetoin and 2,3-butanediol produced by Bacillus subtilis

Small volatile molecules are considered to play a role in promoting plant growth, with acetoin and 2,3-butanediol being representative examples. In this study, we employed metabolic engineering of Bacillus subtilis to enhance the production of acetoin and 2,3-butanediol, and investigated the...

2025-10-16 | MTBLS13110 | MetaboLights

Rare Allele of A Novel Histone H4 Acetyltransferase Enhances Grain Weight, Yield and Plant Biomass Presumably Through the Regulation of Transcription

Grain weight is an important crop yield component; however, its underlying regulatory mechanisms are largely unknown. Here, we identify a grain-weight quantitative trait locus (QTL) encoding a new-type GNAT-like protein that harbors intrinsic histone acetyltransferase activity (OsglHAT1). Our geneti...

ORGANISM(S): Oryza sativa Japonica Group

2015-02-10 | E-GEOD-62554 | biostudies-arrayexpress

Lutz et al 2023 Predicting crop yield

PRJEB56590 | ENA

Ectopic expression of the AtCDF1 transcription factor in potato enhances tuber starch and amino acid contents and yield under open field conditions through proteome resetting

Cycling Dof Factor (CDF) transcription factors have been implicated in different aspects of plant growth and development. In Arabidopsis and tomato, two members of this family CDF1 and CDF3 have recently been associated with the regulation of primary metabolism and abiotic stress responses, but thei...

ORGANISM(S): Solanum tuberosum (Potato)

2023-02-15 | PXD036489 | Pride