Cross-species comparison

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Unknown (886)
Transcriptomics (243)
Genomics (242)
Proteomics (44)
Metabolomics (18)
Other (5)
Methylation profiling (4)
Models (2)

Organisms

Homo sapiens (75)
Mus musculus (71)
Rattus norvegicus (15)
Sus scrofa (12)
Arabidopsis thaliana (11)
Gallus gallus (9)
Saccharomyces cerevisiae (7)
Canis lupus familiaris (7)
Bos taurus (6)
Drosophila melanogaster (5)
Coturnix japonica (5)
Macaca fascicularis (5)
Anas platyrhynchos (5)
Danio rerio (5)
Enchytraeus albidus (4)
Aspergillus flavus (4)
Caenorhabditis elegans (3)
Xenopus laevis (3)
Streptomyces coelicolor (2)
Medicago truncatula (2)
Zea mays (2)
Oryza sativa (2)
Eutrema salsugineum (2)
Ricinus communis (1)
Callithrix sp. (1)
Gorilla gorilla gorilla (1)
Litomosoides sigmodontis (1)
Ichthyophthirius multifiliis (1)
Musa sp. (1)
Caenorhabditis briggsae (1)

Organisms

Mus musculus (31)
Homo sapiens (29)
Sus scrofa (6)
Danio rerio (6)
Rattus norvegicus (5)
Leptospira interrogans (4)
Arabidopsis thaliana (4)
Petromyzon marinus (3)
Gallus gallus (3)
Enchytraeus albidus (2)
Aspergillus flavus (2)
Aspergillus nidulans (2)
Xenopus laevis (2)
Leptospira borgpetersenii (2)
Macaca fascicularis (2)
Bos taurus (2)
Chlorocebus aethiops vervet (1)
Cardamine sp. SIM-2007 (1)
Streptomyces mobaraensis (1)
Cervus elaphus (1)
Myotis pilosus (1)
Picea glauca (1)
Branchiostoma belcheri (1)
Ichthyophis bannanicus (1)
Hansenia weberbaueriana (1)
Heterostelium pallidum (1)
Tribolium castaneum (1)
Zoysia japonica (1)
Carassius auratus (1)
Canis lupus (1)

Repository

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biostudies-arrayexpress (155)
geo (124)
pride (35)
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Tissue

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Plant (1)
Plant embryo (1)
Primary cell (1)
Root (1)
Seedling (1)
Skin (1)

Disease

Normal (3)
Disease free (2)
Not Available (1)
Autism spectrum disorder (1)
Fibrosarcoma (1)
Liver disease (1)
Malignant mesothelioma (1)
Tularemia (1)

Technology Type

Mass Spectrometry (35)
Mass spectrometry (15)
Bottom-up proteomics (13)
Data-independent acquisition (13)
Shotgun proteomics (13)
Data-dependent acquisition (5)
SWATH MS (4)
NMR spectroscopy (2)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Illumina NovaSeq 6000 (5)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina HiSeq 2500 (2)
Q Exactive (2)
Liquid Chromatography MS - positive - hilic (2)
G2500A GeneArray scanner [Agilent Technologies] (1)
GenePix Personal 4100A [Axon Instruments] (1)
BGISEQ-500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
Bruker Daltonics maXis series|1001547 (1)
Instrument (1)
Q Exactive HF-X (1)
Flow injection analysis MS - (1)
Direct infusion MS - negative (1)
MaXis (Bruker) (1)
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Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Gas Chromatography MS - positive (1)
Quattro Premier XE (Waters) (1)
LTQ Orbitrap XL (Thermo Scientific) (1)
Agilent (1)
Liquid Chromatography MS - (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2010 (37)
2015 (32)
2025 (32)
2014 (25)
2024 (22)
2009 (22)
2023 (21)
2011 (21)
2026 (21)
2013 (20)
2012 (16)
2022 (11)
2016 (10)
2008 (10)
2021 (9)
2020 (7)
2018 (7)
2007 (7)
2006 (4)
2005 (3)
2017 (3)
2019 (2)
2004 (1)

UNIPROT ID/AC

A5ACR7_VITVI (5)
A5ADJ5_VITVI (5)
A5ADV7_VITVI (5)
A5AE63_VITVI (5)
A5AEB4_VITVI (5)
A5AEH1_VITVI (5)
A5AEI0_VITVI (5)
A5AFH3_VITVI (5)
A5AFX4_VITVI (5)
A5AGD5_VITVI (5)
A5AGN5_VITVI (5)
A5AHJ5_VITVI (5)
A5AHY0_VITVI (5)
A5AJ83_VITVI (5)
A5AJY2_VITVI (5)
A5AKD8_VITVI (5)
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A5ALB2_VITVI (5)
A5ALT5_VITVI (5)
A5ALV6_VITVI (5)
A5AML5_VITVI (5)
A5ANR7_VITVI (5)
A5ANX3_VITVI (5)
A5AP38_VITVI (5)
A5APB9_VITVI (5)
A5APR3_VITVI (5)
A5AQ47_VITVI (5)
A5AQ65_VITVI (5)
A5AQ89_VITVI (5)
A5AR17_VITVI (5)

CHEBI ID

CHEBI:84167 (2)
CHEBI:80589 (2)
CHEBI:55437 (2)
CHEBI:16448 (2)
CHEBI:3410 (2)
CHEBI:16707 (2)
CHEBI:32211 (2)
CHEBI:17286 (2)
CHEBI:3980 (2)
CHEBI:17337 (2)
CHEBI:47908 (2)
CHEBI:23437 (2)
CHEBI:32212 (2)
CHEBI:1894 (2)
CHEBI:17491 (2)
CHEBI:80650 (2)
CHEBI:16184 (2)
CHEBI:3472 (2)
CHEBI:18106 (2)
CHEBI:17209 (2)
CHEBI:137215893 (2)
CHEBI:18310 (2)
CHEBI:17294 (2)
CHEBI:18271 (2)
CHEBI:82711 (2)
CHEBI:8572 (2)
CHEBI:47788 (2)
CHEBI:80566 (2)
CHEBI:8163 (2)
CHEBI:2775047622 (2)

Metabolite Name

Fucoxanthin (3)
Glucose (3)
Phytosphingosine (3)
Piperidines (2)
Pravastatin lactone (2)
Hemiasterlin (2)
5,7-Dihydroxy-2-(4-methoxyphenyl)-8-(3-methylbutyl)-4-oxo-4H-chromen-3-YL 6-deoxy-alpha-L-mannopyranoside (2)
Metreton (2)
3-(4-Hydroxyphenyl)-3,5,6,8-tetrahydro-2H-chromene-4,7-dione (2)
N-Docosahexaenoyl Tryptophan (2)
N-Arachidonoyl Valine (2)
Citrusin III (2)
2-[4-[(Z)-4-Chloro-1,2-diphenylbut-1-enyl]phenoxy]ethanol (2)
Inosine pyruvate (2)
Milbemycin beta1 (2)
Citrusin F (2)
4-(4-Fluorophenyl)-2-(4-hydroxyphenyl)-5-(4-pyridyl)imidazole (2)
Methyl 6-O-galloyl-beta-D-glucopyranoside (2)
Alpha-Fluoromethylhistamine (2)
Dehydrosafynol (2)
(6R)-5,10-methenyltetrahydrofolate (2)
N-Tetradecyl-N,N-dimethyl-3-ammonio-1-propanesulfonate (2)
Batelapine (2)
(2r)-(4-Chlorophenyl)[3-(Trifluoromethyl)phenoxy]ethanoic Acid (2)
4'-O-Methyl-(-)-epicatechin 3'-O-glucuronide (2)
Salvianolic acid D (2)
Agar (2)
Rosuvastatin 5 S-lactone (2)
8-Nitroguanosine (2)
Lasofoxifene (2)

First Public Date

2025 (42)
2014 (42)
2023 (23)
2026 (21)
2024 (18)
2015 (14)
2021 (13)
2022 (10)
2013 (9)
2019 (7)
2020 (4)
2018 (4)
2016 (4)
2017 (3)

Modelling Approach

Constraint-based model (2)

Lab affiliation

Professor, Deputy Head of Centre Novo Nordisk Foundation Center for Protein Research University of Copenhagen Copenhagen, DENMARK (6)
Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, 97074 Würzburg, Germany (1)
Carnegie Mass Spectrometry Facility (1)
Center for Biotechnology and Genomic Medicine, Medical College of Georgia, Augusta University, USA (1)
Centre for Children's Health Research (CCHR) Queensland University of Technology 62 Graham Street South Brisbane, QLD 4101 AUSTRALIA (1)
Centre scientifique de Monaco, Monaco (1)
Children's Hospital of Philadelphia 10-052 Colket Translational Research Bldg 3501 Civic Center Blvd Philadelphia, PA 19104 Office: 267-760-7684 (1)
Department of Biologyy, University of Rochester, NY, USA University of Rochester Mass Spectrometry Resource Laboratory, NY, USA (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States (1)
Department of Molecular Pathology, Faculty of Military Health Sciences, University of Defense, Hradec Kralove, Czech Republic (1)
Department of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (1)
Executive Director, Professor Novo Nordisk Foundation Center for Protein Research Proteomics Program (1)
Gregor Mendel Institute of Molecular Plant Biology GmbH Dr. Bohr-Gasse 3, 1030 Vienna, Austria Phone: +43 1 79044 9850 http://www.gmi.oeaw.ac.at (1)
Group leader - Systems Biology of Aging Leibniz Institute on Aging – Fritz Lipmann Institute (FLI) Germany (1)
Institute of Diabetes and Regeneration Research, Helmholtz Munich, Neuherberg, Germany (1)
Institute of Veterinary Pharmacology and Toxicology, Vetsuisse Faculty, University of Zurich, 8057 Zürich, Switzerland (1)
Laboratory of Angiogenesis and Vascular Metabolism, Department of Oncology, KU Leuven, Leuven 3000, Belgium (1)
Max-Planck-Institut für Biochemie Abt. Proteomics und Signaltransduktion Am Klopferspitz 18 D-82152 Martinsried (1)
MicroMatrices Associates LTD (1)
Oncoproteomic Unit (1)
Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Reader in Zoology (Molecular Ecology) (1)
Research Unit Bacterial Communication and Anti-infectious Strategies (CBSA, UR4312), University of Rouen Normandie, 27000 Evreux, France (1)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences (1)
Trinity College Dublin, Ireland (1)
University of Cologne, CECAD (1)
University of Copenhagen, Department of Biomedical Sciences, Panum Institute 12.5, Blegdamsvej 3, Copenhagen N, Denmark. (1)
University of Washington (1)
WWU Münster IBBP (1)
seoul national university (1)

IsPrivate

False (2)

Submitter Keywords

FROG (1)

Classification

fungi (4)
bacteria (4)
protozoa (1)

Study type

Transcription profiling by array (91)
RNA-seq of coding RNA (17)
Unknown experiment type (9)
Comparative genomic hybridization by array (6)
RNA-seq of coding RNA from single cells (6)
RNA-seq of non coding RNA (5)
ChIP-chip by tiling array (4)
Transcription profiling by tiling array (4)
Transcription profiling by RT-PCR (3)
Other (3)
ChIP-seq (3)
Transcription profiling by SAGE (2)
Cell line - High-throughput sequencing (1)
Methylation profiling by array (1)

Release Date

2025 (78)
2023 (75)
2022 (72)
2024 (68)
2021 (62)
2019 (62)
2016 (57)
2010 (57)
2014 (55)
2020 (52)
2018 (52)
2015 (50)
2013 (47)
2011 (43)
2009 (41)
2017 (41)
2012 (33)
2008 (23)
2007 (15)
2006 (15)
2026 (11)
2004 (8)
2005 (7)
2000 (5)
1999 (5)
2003 (4)
2001 (2)
2002 (1)

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Cross-species proteomic comparison of whole cell lysates, outer membrane vesicles and membrane fractions of Francisella tularensis subsp. tularensis versus subsp. holarctica

Secretion of outer membrane vesicles (OMV) presents an important phenomenon in Gram-negative bacteria and they play multiple roles in their lifestyle including virulence and host-pathogen interaction. Francisella tularensis secretes unusually shaped tubular OMV. We here present a proteomic compariso...

ORGANISM(S): Francisella tularensis Francisella tularensis subsp. tularensis SCHU S4 Francisella tularensis subsp. holarctica FSC200

2021-02-08 | PXD022406 | Pride

Cross-species gene expression analysis of species-specific differences in preclinical assessment of pharmaceutical compounds (rat)

Significant qualitative and quantitative differences exist between humans and the animal models used in research. However, significant quantitative and qualitative differences exist between humans and the animal models used in research. This is as a result of genetic variation between human and the ...

ORGANISM(S): Rattus norvegicus

2014-04-30 | E-GEOD-47695 | biostudies-arrayexpress

Cross-species gene expression analysis of species-specific differences in preclinical assessment of pharmaceutical compounds (human)

ORGANISM(S): Homo sapiens

2014-04-30 | E-GEOD-47970 | biostudies-arrayexpress

Cross species comparison of expression patterns

PRJNA91829 | ENA

A multimodal cross-species comparison of pancreas development [multiome]

PRJNA1090856 | ENA

Cross-species comparison reveals therapeutic vulnerabilities halting glioblastoma progression

PRJNA1004206 | ENA

Cross-species comparison reveals therapeutic vulnerabilities halting glioblastoma progression