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TranscriptomicsTranscription profiling time series of Candida albicans treated with different doses of acetic acid
Wild type Candida albicans (CAI8 containing CIp10) cultures were grown in triplicate at 1 x 107 cells ml-1 in 50 ml SC-pH3.0 broth. Cultures were then treated with 0, 20, 120 or 300
mM acetic acid. Cells were harvested after zero, 10, 30, 60, 120, 210 and 300 min treatment. RNA isolated from tri...
ORGANISM(S): Candida albicans 
2008-07-31 | E-MEXP-1645 | biostudies-arrayexpress
TranscriptomicsTranscription profiling wild type C. albicans after treatment with stress-inducing doses of acetic acid
Transcript profiling was performed using a wild-type C. albicans strain (CaI8+CIp10). Cells were cultured in 50 ml SC-pH3.0 to a cell density of 1x10^7 cells per ml and then either treated with control (0 mM acetic acid) or stress inducing (20 mM acetic acid) doses. Cells from the same culture were ...
ORGANISM(S): Candida albicans 
2008-07-31 | E-MEXP-1633 | biostudies-arrayexpress
TranscriptomicsStranded Total RNA-seq of whole blood cells collected from Holstein Friesian cows that were defined from cluster analysis as being metabolically "balanced", "imbalanced" or "other
Homeorhetic mechanisms assist dairy cows to transition from pregnancy to lactation. In some cows this is less successful and they develop severe negative energy balance, placing them at risk of metabolic and infectious disease and reduced fertility. We placed Holstein Friesian cows into metabolicall...
ORGANISM(S): Bos taurus 
2021-07-09 | E-MTAB-9347 | biostudies-arrayexpress
TranscriptomicsStranded Total RNA-seq of liver biopsy collected from Holstein Friesian cows that were defined from cluster analysis as being metabolically "balanced", "imbalanced" or "other
Homeorhetic mechanisms assist dairy cows to transition from pregnancy to lactation. In some cows this is less successful and they develop severe negative energy balance, placing them at risk of metabolic and infectious disease and reduced fertility. We placed Holstein Friesian cows into metabolicall...
ORGANISM(S): Bos taurus 
2021-07-09 | E-MTAB-9348 | biostudies-arrayexpress
TranscriptomicsStranded Total RNA-seq of whole blood cells collected from Holstein Friesian cows
Bovine mastitis is an inflammatory disease of the mammary gland with serious economic implications for dairy industries worldwide. We performed total RNA sequencing using whole blood cells collected from multiparous Holstein Friesian dairy cows with naturally occurring mastitis to investigate the c...
ORGANISM(S): Bos taurus 
2021-07-09 | E-MTAB-9431 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Candida albicans wild type and mnl1 cells after treatment with acetic acid
Wt vs mnl1 cells after 300 min treatment with 20 mM acetic acid in SC-pH3.0
ORGANISM(S): Candida albicans 
2008-07-31 | E-MEXP-1641 | biostudies-arrayexpress
TranscriptomicsStranded Total RNA-seq of liver biopsy collected from Holstein Friesian cows
To explore potential functional genes related to milk production traits in cow, we performed total RNA-seq using liver biospy collected from 77 Holstein Friesian cows at postpartum 2 weeks.
ORGANISM(S): Bos taurus 
2021-07-09 | E-MTAB-9871 | biostudies-arrayexpress
TranscriptomicsBos taurus ATAC-seq across 88 tissue samples to profile open chromatin regions in the cattle genome
We performed the assay for transposase-accessible chromatin using sequencing (ATAC-seq) using 88 tissue samples to profile open chromatin regions in the cattle genome.
ORGANISM(S): Bos taurus 
2023-08-24 | E-MTAB-11825 | biostudies-arrayexpress
TranscriptomicsRNA-seq profiling of theca and granulosa tissue of dominant follicle at 3 stages of follicular development in cows and heifers.
Cellular mechanisms that contribute to low estradiol concentrations produced by the preovulatory ovarian follicle in cattle with a compromised metabolic status (such as lactatino) are largely unknown. To gain insight into the main metabolic mechanisms affecting preovulatory follicle function RNAseq ...
ORGANISM(S): Bos taurus 
2012-06-15 | E-GEOD-34317 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse embryoid body differentation in a time series
Expression profiling of a 16 day mouse embryoid body (EB) differentiation time course.
ORGANISM(S): Mus musculus 
2008-06-01 | E-TABM-433 | biostudies-arrayexpress
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