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MetabolomicsCross-kingdom synthetic microbiota suppresses wheat Fusarium crown rot by remodeling the rhizosphere microbiome and metabolome

Wheat is a major staple crop grown across the globe. Fusarium crown rot (FCR) of wheat, caused by Fusarium pseudograminearum, is a destructive soil-borne disease that lacks effective sustainable control measures. Here, we assembled a cross-kingdom synthetic microbial community (SMC) comprising Tr...

2025-09-06 | MTBLS12946 | MetaboLights
Metabolomics3D Imaging and metabolomic profiling reveal higher neuroactive kavalactone contents in lateral roots and crown root peels of Piper methysticum (kava)

BACKGROUND: Kava is an important neuroactive medicinal plant. While kava has a large global consumer footprint for its clinical and recreational use, factors related to its use lack standardization and the tissue-specific metabolite profile of its neuroactive constituents is not ...

2020-10-28 | MTBLS1485 | MetaboLights
TranscriptomicsHigh-throughput RNA sequencing in crown tissue of barley sdw1 near-isogenic lines
This study’s objective was to elucidate plant modifications and crown-specific transcriptome re-modeling that takes place in gibberellin-deficient barley sdw1 NILs exposed to increased temperatures. Experiments were designed to determine whether the phenotypic expression of sdw1 mutants is influence...
ORGANISM(S): Hordeum vulgare 
2022-04-05 | E-MTAB-10789 | biostudies-arrayexpress
TranscriptomicsGenome-wide analysis of the cytosine methylation profile in Arabidopsis thaliana crown galls
Integration of the bacterial T-DNA into the plant genome by virulent agrobacteria causes crown gall development on many plant species. Plant tumor development shares fundamental similarities with mammalian cancer progression despite obvious differences in initiation of tumor development. For neoplas...
ORGANISM(S): Arabidopsis thaliana 
2013-02-18 | E-GEOD-37680 | biostudies-arrayexpress
TranscriptomicsLow temperatures impact dormancy status, flowering competence, and transcript profiles in crown buds of leafy spurge.
Leafy spurge (Euphorbia esula) is an herbaceous perennial weed that produces vegetatively from an abundance of underground adventitious buds. The objectives of this study were to determine how mimicking natural seasonal conditions (photoperiod and temperature) under controlled environmental conditio...
ORGANISM(S): Euphorbia esula 
2010-05-19 | E-GEOD-19217 | biostudies-arrayexpress
TranscriptomicsmRNA sequencing in crown tissue of barley sdw1 near-isogenic lines
We employed the mRNA-seq method to acquire transcriptome-wide characterization of the crown tissue and provide new insights into the expression profiles of heat- and gibberellin-related genes. The study accompanied application of ATAC-seq strategy to identify open chromatin regions (OCRs) and to cha...
ORGANISM(S): Hordeum vulgare 
2024-10-30 | E-MTAB-13599 | biostudies-arrayexpress
TranscriptomicsManipulation of Temperature and Photoperiod Identifies Molecular Networks Associated with the Para- to Endo-dormant Transition in Leafy Spurge Crown Buds
Leafy spurge is a model for studying well-defined phases of dormancy in underground adventitious buds (UABs) of herbaceous perennial weeds, which is a primary factor allowing many invasive perennial weeds to escape conventional control measures. A 12-week ramp down in both temperature (27M-BM-0C M-b...
ORGANISM(S): Euphorbia esula 
2012-12-31 | E-GEOD-37477 | biostudies-arrayexpress
TranscriptomicsExpression analysis of leafy spurge crown buds during dormancy transitions and release.
This submission contains the RNAseq data from one (just the study on paradormancy release) of several studies used to assemble the leafy spurge tranacriptome. These assembled transcrptome was built from 1) A study of leafy spurge crown buds through a time course for paradormancy release induced by e...
ORGANISM(S): Euphorbia esula 
2015-08-05 | E-GEOD-71317 | biostudies-arrayexpress
TranscriptomicsATAC sequencing in crown tissue of barley sdw1 near-isogenic lines
ATAC-seq strategy was applied to identify open chromatin regions and to characterize their distributions and organizations in crown tissues of three barley (Horedeum vulgare) genotypes carrying different allelic forms of the sdw1 gene encoding Gibberellin 20-oxidase (GA20ox) subjected to high temper...
ORGANISM(S): Hordeum vulgare 
2024-10-30 | E-MTAB-13600 | biostudies-arrayexpress
TranscriptomicsExpression analysis of leafy spurge crown buds during seasonal dormancy transitions.
This submission contains the RNAseq data from a study of leafy spurge crown buds transitioning through a seasonal dormancy time course where buds transitioned from paradoprmancy to endodormancy and then to ecodormancy. The sequences in this study were mapped to an assembled transcriptome built from ...
ORGANISM(S): Euphorbia esula 
2015-08-05 | E-GEOD-71321 | biostudies-arrayexpress
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