Csp - OmicsDI

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Unknown (1724)
Transcriptomics (265)
Genomics (167)
Proteomics (62)
Metabolomics (17)
Models (6)
Clinical (3)
Genomic (2)

Organisms

Homo sapiens (105)
Mus musculus (69)
Saccharomyces cerevisiae (28)
Drosophila melanogaster (14)
Arabidopsis thaliana (9)
Streptococcus mutans UA159 (9)
Rattus norvegicus (7)
Bos taurus (4)
Danio rerio (4)
Candida albicans (4)
Streptococcus pneumoniae (4)
Caenorhabditis elegans (3)
Streptococcus mutans (3)
Thermus thermophilus HB8 (2)
Zea mays (2)
Canis lupus familiaris (2)
Sus scrofa (2)
Tribolium castaneum (2)
Tigriopus californicus (1)
Streptococcus sanguinis (1)
Drosophila montana (1)
Acropora millepora (1)
Oncorhynchus nerka (1)
Platichthys flesus (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Austrofundulus limnaeus (1)
Neurospora crassa (1)
Trypanosoma brucei brucei (1)
Coprinopsis cinerea (1)
Plasmodium berghei (1)

Organisms

Mus musculus (15)
Homo sapiens (10)
Plasmodium falciparum (8)
Streptococcus mutans UA159 (5)
Cellulomonas sp. JGI 051 (2)
Sphingomonadaceae bacterium (2)
Solirubrobacterales bacterium (2)
Streptococcus mitis (2)
Streptococcus pneumoniae (2)
Anthonomus eugenii (1)
bacterium JGI 053 (1)
Streptococcus gordonii str. Challis (1)
Mesorhizobium sp. JGI 033 (1)
Flavobacterium sp. JGI 052 (1)
Sphingomonas bacterium (1)
Rhodoplanes sp. JGI 031 (1)
Methylibium sp. JGI 040 (1)
Sphingomonas sp. JGI 038 (1)
Enhydrobacter sp. JGI 042 (1)
Edaphobacter sp. JGI 001 (1)
Devosia sp. JGI 030 (1)
Aquamicrobium sp. JGI 032 (1)
Arenimonas sp. JGI 044 (1)
Agrobacterium sp. JGI 035 (1)
Agrobacterium sp. JGI 034 (1)
1895764 (1)
Streptococcus pneumoniae D39 (1)
Caldanaerobacter subterraneus subsp. tengcongensis MB4 (1)
Lysobacteraceae bacterium (1)
Sporichthyaceae bacterium JGI 012 (1)

Repository

biostudies-arrayexpress (250)
ENA (147)
MassIVE (36)
geo (26)
MetaboLights (17)
pride (13)
EGA (7)
jPOST (7)
BioModels (6)
iProX (5)
dbGaP (2)
EVA (2)
PAXDB (1)

Tissue

Heart (2)
Brain (2)
Blood plasma (2)
Cardiocyte (1)
Cerebrospinal fluid (1)
Leaf (1)
Cell culture (1)

Disease

Cardiovascular system disease (2)
Normal (1)
Colorectal CPS clip (1)
Primary Myelofibrosis (1)
Adenoma (1)
Plasmodium falciparum malaria (1)
Malaria (1)

Technology Type

Mass Spectrometry (13)
Mass spectrometry assay (9)
Mass spectrometry (8)
Shotgun proteomics (6)
Bottom-up proteomics (5)
Data-independent acquisition (2)
NMR spectroscopy (1)
Gel-based experiment (1)
Data-dependent acquisition (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (13)
Illumina HiSeq 4000 (6)
LTQ Orbitrap (6)
AB SOLiD 4 System (4)
TripleTOF 5600 (4)
Illumina HiSeq 2000 (3)
Q Exactive HF (3)
Orbitrap Fusion Lumos (3)
Illumina HiSeq 2500 (2)
- (2)
LTQ Orbitrap Velos (2)
LTQ Orbitrap Elite (2)
Orbitrap Fusion (2)
Q Exactive Plus (2)
Orbitrap Exploris 480 (2)
N/C (1)
Microcentrifuge (1)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq 1000 (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
NextSeq 550 (1)
NextSeq 500 (1)
AB 5500xl Genetic Analyzer (1)
Illumina NextSeq 500 (1)
MALDI Synapt G2-S HDMS (1)
Q Exactive Orbitrap HF mass spectrometer (1)
7000A Triple Quadrupole GC/MS (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Synapt G2-S HDMS (1)

Publication Date

2012 (36)
2015 (33)
2008 (30)
2011 (29)
2024 (23)
2025 (22)
2010 (22)
2016 (21)
2013 (19)
2021 (18)
2014 (18)
2023 (17)
2009 (14)
2022 (12)
2020 (10)
2018 (8)
2026 (6)
2017 (5)
2007 (5)
2019 (4)
2006 (3)
2005 (3)
2004 (1)

UNIPROT ID/AC

A0A1S3MBI7 (1)
A0A1S3RDV7 (1)
A0A1S3SLA8 (1)
B5X3P0 (1)
A0A1S3N3T3 (1)
A0A1S3NZZ4 (1)
A0A1S3P094 (1)
A0A1S3PY93 (1)
Q19VI0 (1)
A0A1S3M1N8 (1)
A0A1S3NHN0 (1)
A0A1S3KZD6 (1)
A0A1S3SD21 (1)
A0A1S3LDQ3 (1)
A0A1S3P3J9 (1)
A0A1S3LD76 (1)
A0A1S3LEH9 (1)
A0A1S3MF70 (1)
A0A1S3MF67 (1)
A0A1S3MEX0 (1)
A0A1S3MEU5 (1)
A0A1S3RYH9 (1)
A0A1S3RYI5 (1)
A0A1S3P4C7 (1)
A0A1S3P297 (1)
A0A1S3P8N0 (1)
A0A1S3PB08 (1)
A0A1S3N1B9 (1)
C0HBN7 (1)
A0A1S3LIF1 (1)

CHEBI ID

CHEBI:58370 (5)
CHEBI:15033 (5)
CHEBI:57692 (5)
CHEBI:57600 (5)
CHEBI:58735 (5)
CHEBI:58369 (5)
CHEBI:57451 (5)
CHEBI:57455 (5)
CHEBI:57328 (5)
CHEBI:58475 (5)
CHEBI:60471 (5)
CHEBI:61404 (5)
CHEBI:57667 (5)
CHEBI:57597 (5)
CHEBI:58228 (5)
CHEBI:58115 (5)
CHEBI:57464 (5)
CHEBI:58467 (5)
CHEBI:58426 (5)
CHEBI:58593 (5)
CHEBI:57566 (5)
CHEBI:58069 (5)
CHEBI:58592 (5)
CHEBI:58243 (5)
CHEBI:58339 (5)
CHEBI:58457 (5)
CHEBI:58245 (5)
CHEBI:58264 (5)
CHEBI:58759 (5)
CHEBI:58307 (5)

Metabolite Name

Palmitic acid (3)
Myristic acid (3)
Undecanoic acid (2)
Erucic acid (2)
Undecanedioic acid (2)
Choline (2)
Taurine (2)
4-Hydroxybenzaldehyde (2)
Spermidine (2)
Linoleic acid (2)
Hexadecanedioic acid (2)
Azelaic acid (2)
Tryptophan (2)
L-Tyrosine (2)
Inosine (2)
[2-(5,7-dihydroxy-4-oxo-2-phenyl-3,4-dihydro-2H-1-benzopyran-8-yl)-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]oxidanesulfonic acid (1)
H-89 (1)
PHENYL-gamma-Aminobutyric Acid (1)
4Z,7Z,10Z,13Z,16Z,19Z-Docosahexaenoic acid (1)
7Z,10Z,13Z,16Z,19Z-Docosapentaenoic acid (1)
11Z,14Z-Eicosadienoic acid (1)
¦Á-Linolenic acid (1)
¦Ã-Linoleic acid (1)
Linolelaidic acid (1)
LPC(18:0)+HCOO (1)
LPC(17:1)+HCOO (1)
LPC(17:0)+HCOO (1)
LPC(16:1e)+HCOO (1)
LPC(16:1)+HCOO (1)
LPC(16:0)+HCOO (1)

First Public Date

2017 (23)
2016 (19)
2025 (18)
2024 (17)
2015 (12)
2014 (9)
2020 (8)
2023 (7)
2021 (7)
2026 (6)
2018 (6)
2013 (6)
2022 (5)
2019 (4)

Modelling Approach

Constraint-based model (4)
Metabolic network (2)

Study status

Not provided (1)
Recruiting (1)
Completed (1)

Lab affiliation

Master program for clinical pharmacogehomics and pharmacoprotemics Chia-Li Han LAB.Taipei (1)
University of Groningen, University Medical Center Groningen, Department of Cardiology, The Netherlands, Hanzeplein 1, 9713 GZ, Groningen, the Netherlands (1)
UCL Centre for Inborn Errors of Metabolism, Great Ormond Street Institute of Child Health (1)
Gladstone Institute of Neurological Disease, San Francisco, CA, USA; Department of Neurology, University of California, San Francisco, San Francisco, CA, USA; Bakar Aging Research Institute, University of California, San Francisco, San Francisco, CA, USA. (1)
Assistant Professor, Neurology University of California, San Francisco (1)
Department of Pathobiology College of Veterinary Medicine University of Illinois at Urbana-Champaign (1)
University of Chieti-Pescara, Depatment of Pharmacy (1)
Department of Molecular Physiology and Cell Signalling Institute of Systems, Molecular and Integrative Biology University of Liverpool (1)
Agronomy College, Henan Agricultural University, China (1)
Plateforme P3S - UMS PASS 37 - Sorbonne Universite - INSERM (1)
Institute of Zoology, Chinese Academy of Sciences (1)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (1)
Institute for Systems Biology (1)

Keyword

Mycophenolic Acid (1)
Cyclosporine (1)
Fludarabine (1)
Fludarabine phosphate (1)
Cyclosporins (1)
Coldsnare polypectomy (1)
Hotsnare polypectomy (1)
Intermediate sized polyps (1)

IsPrivate

False (6)

Submitter Keywords

FROG (2)

Classification

bacteria (13)
protozoa (8)
fungi (3)

Study type

Transcription profiling by array (172)
RNA-seq of coding RNA (27)
ChIP-seq (7)
Other (5)
RNA-seq of coding RNA from single cells (5)
RNA-seq of total RNA (5)
RIP-seq (4)
Unknown experiment type (3)
ChIP-chip by tiling array (3)
Cell line - High-throughput sequencing (3)
RNA-seq of non coding RNA (3)
Interventional (3)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
Human - High-throughput sequencing (1)
Translation profiling (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
Trajectory (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)

Release Date

2025 (215)
2022 (203)
2023 (195)
2024 (168)
2021 (151)
2020 (131)
2019 (99)
2015 (94)
2018 (92)
2017 (85)
2016 (84)
2012 (75)
2014 (64)
2011 (64)
2013 (56)
2010 (46)
2008 (42)
2009 (35)
2026 (23)
2007 (13)
2006 (10)
2005 (6)
2001 (6)
2004 (4)
2003 (4)
2002 (3)
2000 (3)
1999 (2)

Location

Germany (1)
United States (1)

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Subpopulation-specific transcriptome analysis of cytometrically sorted Streptococcus mutans cells: Analysis of CSP-mediated intrapopulation diversity

Transcriptional profiling of the competence-stimulating peptide (CSP) response in Streptococcus mutans of FACS-separated subpopulations and mixed cells of a clonal culture. CSP-mediated competence development in S. mutans is a transient and biphasic process since only a subpopulation induces expres...

ORGANISM(S): Streptococcus mutans

2011-02-01 | E-GEOD-25284 | biostudies-arrayexpress

Comprehensive transcriptome profiles distinguish the CSP and XIP signaling pathways in Streptococcus mutans UA159

In Streptococcus mutans, an oral colonizer associated with dental caries, competence for natural transformation can be triggered by both CSP and XIP pheromones. Competence induced by CSP is a late response that requires induction of the XIP encoding gene comS, but the mechanism(s) linking the two sy...

ORGANISM(S): Streptococcus mutans UA159

2015-09-01 | E-GEOD-70067 | biostudies-arrayexpress

Peptide alarmone signalling triggers an auto-active bacteriocin necessary for genetic competence

The induction of genetic competence is a strategy used by bacteria to increase their genetic repertoire under stressful environmental conditions. Recently, Streptococcus pneumoniae has been shown to co-ordinate the uptake of transforming DNA with fratricide via increased expression of the peptide ph...

ORGANISM(S): Streptococcus mutans UA159

2010-05-29 | E-GEOD-22019 | biostudies-arrayexpress

16S BEF CSP soil

Bacterial 16S amplicon sequences of the BEF CSP soil experiment

PRJEB8980 | ENA

ITS BEF CSP soil

Fungal ITS amplicon sequences of the BEF CSP soil experiment

PRJEB8979 | ENA

BEF CSP Dead Wood

Fungal ITS amplicon sequences of the BEF CSP Dead wood experiment

PRJEB8978 | ENA

Expression Profile Of A Caenorhabditis Elegans Model Of Adult Onset Neuronal Ceroid Lipofuscinosis Reveals Down Regulation Of Ubiquitin E3 Ligase Components.

Transcriptional profiling of two C. elegans mutants of dnj-14, the worm homolog of cysteine string protein (CSP), compared to two control strains N2 (Bristol) and CZ1200. CSP is a neuroprotective protein and the C. elegans mutants, tm3223 and ok237, are used to model the neurodegenerative disease, a...

ORGANISM(S): Caenorhabditis elegans

2015-12-04 | E-MTAB-3147 | biostudies-arrayexpress

Transcriptome Analysis of Plasmodium CSP stable expressing or control A549 cells

PRJNA782537 | ENA

Transcriptomics of Thy-Tau22 mice (12 month-old) treated with CSP-TTK21

PRJNA1034587 | ENA

Comprehensive transcriptome profiles distinguish the CSP and XIP signaling pathways in Streptococcus mutans UA159

ORGANISM(S): Streptococcus mutans UA159

2015-09-01 | GSE70067 | GEO

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2246 Results

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