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ProteomicsCTCF ChIP-MS from native chromatin in mouse embryonic stem cells (mESCs) and motor neurons (MNs)
To identify CTCF partners and co-localizing proteins from native chromatin in mESCs and MNs in endogenous conditions. The goal is to identify proteins within each sample with respect to wild-type control for each.
ORGANISM(S): Mus musculus (Mouse) 
2022-02-11 | PXD030452 | Pride
Mouse Native chromatin Ctcf chip-ms Ctcf partners Lc-ms/ms 
ProteomicsCTCF ChIP-MS from crosslinked chromatin in mouse embryonic stem cells (mESCs) and motor neurons (MNs)
To identify CTCF partners and co-localizing proteins from crosslinked chromatin in mESCs and MNs in endogenous conditions. The goal is to identify proteins within each sample with respect to wild-type control for each.
ORGANISM(S): Mus musculus (Mouse) 
2022-02-15 | PXD030543 | Pride
Mouse Crosslinked chromatin Ctcf chip-ms Ctcf partners Lc-ms/ms 
ProteomicsAcute depletion of CTCF rewires genome-wide chromatin accessibility
The transcription factor CTCF appears indispensable in defining topologically associated domain boundaries and maintaining chromatin loop structures within these domains, supported by numerous functional studies. However, acute depletion of CTCF globally reduces chromatin interactions but does not s...
ORGANISM(S): Homo sapiens (Human) 
2021-07-04 | PXD026484 | Pride
Multiomics Phosphoproteome Ctcf Proteome 
UnknownSystematic screening of CTCF binding partners identifies that BHLHE40 regulates CTCF genome-wide distribution and long-range chromatin interactions.
Not available
S-EPMC7515718 | biostudies-literature
UnknownAcute depletion of CTCF rewires genome-wide chromatin accessibility.
Not available
S-EPMC8386078 | biostudies-literature
UnknownDNA methylation insulates genic regions from CTCF loops near nuclear speckles.
Not available
S-EPMC12408068 | biostudies-literature
UnknownCTCF regulates the local epigenetic state of ribosomal DNA repeats.
Not available
S-EPMC2993708 | biostudies-literature
UnknownGenome-wide targeting of the epigenetic regulatory protein CTCF to gene promoters by the transcription factor TFII-I.
Not available
S-EPMC4343169 | biostudies-literature
UnknownInteractome mapping defines BRG1, a component of the SWI/SNF chromatin remodeling complex, as a new partner of the transcriptional regulator CTCF.
Not available
S-EPMC6341399 | biostudies-literature
UnknownAnalysis of changes to mRNA levels and CTCF occupancy upon TFII-I knockdown.
Not available
S-EPMC4535928 | biostudies-literature
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