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TranscriptomicsExpression profiling of long noncoding RNAs and mRNAs in mouse heart, whole blood (WB), and plasma.
Long noncoding RNA profile in the heart, whole blood, and plasma before and heart failure (HF). In the study presented here, we mixed the five pairs of mouse hearts, whole blood, and plasma before and after HF and identified the genome-wide expression level of lncRNAs.
ORGANISM(S): Mus musculus 
2013-11-12 | E-GEOD-48885 | biostudies-arrayexpress
Transcriptomicscui- tobacco trichome gene expression
To identify the features of genes expression of leaf trichomes, microarray analysis was performed between trichomes and leaves minus trichomes. RNA extracted from trichomes and leave minus trichomes was used as probes to compare gene expression between the two organs. To ensure the reliability of th...
ORGANISM(S): Nicotiana tabacum 
2011-06-01 | E-MEXP-3148 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse liver to understand the regulation of hepatic gene expression by dwarfism and caloric restriction
Mice were killed between 24 to 26 months of age, tissues removed, rapidly frozen on dry ice, and stored in liquid nitrogen. Total liver RNA was isolated from frozen tissue as described (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted). mRNA le...
ORGANISM(S): Mus musculus 
2007-10-06 | E-GEOD-1093 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling by array to characterize temperature stress responses in larval zebrafish
96 hpf zebrafish larvae were exposed to cold (16 degrees C) or heat (34 degrees C) stress for 2, 12, 24 and 48h. Time-matched controls were maintained at 28 degrees C. The transcriptional responses elicited by temperature stress in larval zebrafish were investigated by microarray.
ORGANISM(S): Danio rerio 
2012-02-01 | E-MTAB-826 | biostudies-arrayexpress
TranscriptomicsTranscriptomic characterization of temperature stress responses in larval zebrafish
96 hpf zebrafish larvae were exposed to cold (16 C) or heat (34 C) stress for 2 and 48h. Time-matched controls were maintained at 28 C. The transcriptional responses elicited by temperature stress in larval zebrafish were investigated by microarray.
ORGANISM(S): Danio rerio 
2012-02-15 | E-MTAB-983 | biostudies-arrayexpress
TranscriptomicsThe HAT Inhibitor Anacardic Acid Leads to Changes in Global Gene Expression During in vitro P.falciparum Development
To better understand the role of histone lysine acetylation in transcription in Plasmodium falciparum, we sought to attenuate the histone acetyltransferase (HAT) activity of PfGCN5 using anacardic acid (AA). We showed that AA reversibly and noncompetitively inhibited the HAT activity of recombinant ...
ORGANISM(S): Plasmodium falciparum 
2008-06-13 | E-GEOD-11763 | biostudies-arrayexpress
TranscriptomicsExpression profiling of long noncoding RNAs and mRNAs in mouse plasma
Long noncoding RNA profile in the mouse plasma after ischemia-reperfusion injury (IRI). In the study presented here, we mixed the plasma from three mouse after IRI and identified the genome-wide expression level of lncRNAs.
ORGANISM(S): Mus musculus 
2015-12-31 | E-GEOD-60726 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of barley plants (Hordeum vulgare L.) during salinity stress
Shoot tissue from 17 day old barley plants was used for expression analysis. Targets from three biological replicates of each were generated and the expression profiles were determined using Affymetrix Barley1 Genechip arrays. Comparisons between the control and stressed samples at three time poin...
ORGANISM(S): Hordeum vulgare 
2007-10-04 | E-GEOD-3097 | biostudies-arrayexpress
TranscriptomicsTranscriptional analysis of development and detoxification in Culex pipiens quinquefasciatus
The genomes of three major mosquito vectors of human diseases, including Anopheles gambiae, Aedes aegypti, and Culex pipiens quinquefasciatus, have been previously sequenced. C. p. quinquefasciatus has the largest number of predicted protein-coding genes, which partially results from the expansion o...
ORGANISM(S): Culex quinquefasciatus 
2012-12-30 | E-GEOD-35744 | biostudies-arrayexpress
TranscriptomicsDifferential gene expression in ref6-1
We demonstrate that REF6/JMJ12 (RELATIVE OF EARLY FLOWERING 6/Jumonji domain-containing protein 12) is an H3K27me3 and H3K27me2 demethylase. Plants overexpressing REF6/JMJ12 resemble mutants defective in H3K27me3-mediated gene silencing. Genetic interaction tests indicate that REF6/JMJ12 acts downst...
ORGANISM(S): Arabidopsis thaliana 
2011-05-25 | E-GEOD-25444 | biostudies-arrayexpress
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