Curtis R R - OmicsDI

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Unknown (1496)
Transcriptomics (61)
Proteomics (25)
Genomics (16)
Metabolomics (13)
Genomic (1)
Multiomics (1)

Organisms

Homo sapiens (55)
Mus musculus (11)
Arabidopsis thaliana (4)
Bos taurus (2)
Glycine max (2)
Escherichia coli 8624 (1)
Theobroma cacao (1)
Xenopus laevis (1)
Staphylococcus aureus (1)
Saccharomyces cerevisiae (1)
Drosophila melanogaster (1)
Danio rerio (1)
Onchocerca volvulus (1)
Escherichia coli (1)
Pseudo-nitzschia multiseries (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (61)
pride (16)
MetaboLights (10)
EGA (8)
ENA (8)
MassIVE (7)
GNPS (3)
dbGaP (1)
iProX (1)
PAXDB (1)

Tissue

Epithelial cell (3)
Blood plasma (2)
Brain (2)
Fibroblast (2)
Ovary cancer cell (2)
Blood cancer cell (1)
Blood serum (1)
Bone cancer cell line (1)
Brain cancer cell line (1)
Breast cancer cell (1)
Breast cancer cell line (1)
Cecum cancer cell line (1)
Cell suspension culture (1)
Cerebral cortex (1)
Cervical cancer cell line (1)
Colonic cancer cell (1)
Colorectal cancer cell line (1)
Embryo (1)
Heart (1)
Kidney cancer cell (1)
Liver cancer cell (1)
Lymph node (1)
Ovary (1)
Ovary cancer cell line (1)
Permanent cell line cell (1)
Prostate cancer cell (1)
Prostate cancer cell line (1)
Prostate gland (1)
Regular cardiac myocyte (1)
Renal cancer cell line (1)

Disease

Normal (3)
Malignant neoplasm of ovary (3)
ACUTE MYELOID LEUKEMIA (2)
Colon cancer (2)
Breast Normal (1)
CHRONIC LYMPHOCYTIC LEUKEMIA (1)
NORMAL (1)
Nonfunctioning endocrine tumors (1)
Squamous cell carcinoma (1)
Colon adenocarcinoma (1)
Lung cancer (1)
Amyotrophic lateral sclerosis (1)
Bone osteosarcoma (1)
Breast cancer (1)
Disease free (1)
Frontotemporal dementia (1)
Ovary epithelial cancer (1)
Pancreatic cancer (1)
Propionic acidemia (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (12)
Mass spectrometry (5)
Mass spectrometry assay (3)
Bottom-up proteomics (3)
NMR spectroscopy (2)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
Affymetrix_SNP6_raw, Illumina HT 12, Agilent ncRNA 60k (1)
MSE (1)

Instrument Platform

Q Exactive HF (5)
Q Exactive (5)
Scanning hardware (3)
ScanArray 4000XL [PerkinElmer] (2)
Bruker (2)
Liquid Chromatography MS - alternating - hilic (2)
10X Chromium (1)
NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)
TimsTOF Pro (1)
6540 Q-TOF LC/MS (Agilent) (1)
LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS -neg - hilic (1)
Liquid Chromatography MS – pos - hilic (1)
TSQ Vantage (Thermo Scientific) (1)
Thermo Scientific LTQ FT Ultra (1)
Xevo QTof MS (Waters) (1)

Publication Date

2010 (17)
2014 (11)
2023 (6)
2013 (6)
2008 (6)
2022 (5)
2012 (5)
2019 (5)
2005 (4)
2024 (4)
2021 (4)
2020 (3)
2017 (3)
2011 (3)
2007 (3)
2026 (3)
2025 (3)
2018 (2)
2015 (2)
2009 (1)
2006 (1)
2016 (1)

UNIPROT ID/AC

14310_SOLLC (1)
14331_SOLLC (1)
14332_SOLLC (1)
14333_SOLLC (1)
14334_SOLLC (1)
14335_SOLLC (1)
14336_SOLLC (1)
14337_SOLLC (1)
14338_SOLLC (1)
14339_SOLLC (1)
4081.Solyc00g017210.1.1 (1)
4081.Solyc00g036540.1.1 (1)
4081.Solyc00g042140.1.1 (1)
4081.Solyc01g006980.2.1 (1)
4081.Solyc01g008090.2.1 (1)
4081.Solyc01g008330.2.1 (1)
4081.Solyc01g008410.1.1 (1)
4081.Solyc01g010580.2.1 (1)
4081.Solyc01g012700.2.1 (1)
4081.Solyc01g016990.1.1 (1)
4081.Solyc01g059760.1.1 (1)
4081.Solyc01g066700.2.1 (1)
4081.Solyc01g068020.2.1 (1)
4081.Solyc01g074000.2.1 (1)
4081.Solyc01g080600.2.1 (1)
4081.Solyc01g081180.1.1 (1)
4081.Solyc01g086800.2.1 (1)
4081.Solyc01g086820.2.1 (1)
4081.Solyc01g087710.2.1 (1)
4081.Solyc01g088410.2.1 (1)

CHEBI ID

CHEBI:15354 (4)
CHEBI:28300 (4)
CHEBI:15611 (3)
CHEBI:15741 (3)
CHEBI:16411 (3)
CHEBI:16449 (3)
CHEBI:16695 (3)
CHEBI:16704 (3)
CHEBI:16811 (3)
CHEBI:16865 (3)
CHEBI:17015 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:17750 (3)
CHEBI:18211 (3)
CHEBI:18237 (3)
CHEBI:22660 (3)
CHEBI:24898 (3)
CHEBI:27266 (3)
CHEBI:27897 (3)
CHEBI:28044 (3)
CHEBI:30769 (3)
CHEBI:6650 (3)
CHEBI:7916 (3)
CHEBI:12962 (2)
CHEBI:13389 (2)
CHEBI:15366 (2)
CHEBI:15428 (2)
CHEBI:15603 (2)
CHEBI:15891 (2)

Metabolite Name

5-Methylcytosine (3)
Creatine (3)
Cytosine (3)
Glycine (3)
Leucine (3)
Levulinic acid (3)
Methionine sulfoxide (3)
Uric acid (3)
(+)-alpha-(2,3-Dimethoxyphenyl)-1-(2-(4-fluorophenyl)ethyl)-4-piperidinemethanol (2)
(-)-Bilobalide (2)
(1E)-1-(3-ethyl-5-methoxy-1,3-benzothiazol-2-ylidene)propan-2-one (2)
(1R,8S,9S)-3,4-dihydroxy-8-methoxy-11,11-dimethyl-5-propan-2-yl-16-oxatetracyclo[7.5.2.01,10.02,7]hexadeca-2,4,6-trien-15-one (2)
(2-Hydroxyethyl)iminodiacetic acid (2)
(22E,24R)-Stigmasta-4,22-diene-3,6-dione (2)
(25S)-Delta(7)-dafachronic acid (2)
(2E,6E,11E,13E)-18-(2,6-dioxopiperidin-4-yl)-9-hydroxy-8-methoxy-10,12,14-trimethyl-15-oxooctadeca-2,6,11,13-tetraenoic acid (2)
(2R)-1-[(tert-butoxy)carbonyl]pyrrolidine-2-carboxylic acid (2)
(2R)-2-(2,5-difluorophenyl)pyrrolidine (2)
(2R)-2-[[(2R)-2-amino-3-sulfanylpropanoyl]amino]-3-(4-hydroxyphenyl)propanoic acid (2)
(2R)-2-[[(2S)-2-amino-3-hydroxypropanoyl]amino]-3-(4-hydroxyphenyl)propanoic acid (2)
(2R)-2-[[(2S)-2-azaniumyl-4-methylsulfanylbutanoyl]amino]-4-methylpentanoate (2)
(2R)-2-amino-3-hydrosulfonylpropanoic acid (2)
(2R)-2-hydroxy-3-methyl-N-[(2S)-1-[[(5S)-3-methyl-4-oxo-2,5-dihydro-1H-3-benzazepin-5-yl]amino]-1-oxopropan-2-yl]butanamide (2)
(2R)-3-(tert-butylamino)propane-1,2-diol (2)
(2R)-3-{[(2,3-dihydroxypropoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (2)
(2R)-6-Oxo-2-piperidinecarboxylic acid (2)
(2R,3S)-2-[[(2S)-2-aminopropanoyl]amino]-3-hydroxybutanoic acid (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[[(1S,6S,9S,10R,14R)-14-hydroxy-5,5,9,14-tetramethyl-6-tetracyclo[11.2.1.01,10.04,9]hexadecanyl]oxy]oxane-3,4,5-triol (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-(2-hydroxy-4-prop-2-enylphenoxy)oxan-2-yl]methoxy]oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-[[7-hydroxy-4-[(Z)-5-hydroxy-3-methylpent-3-enyl]-4a,8,8-trimethyl-3-methylidene-2,4,5,6,7,8a-hexahydro-1H-naphthalen-2-yl]oxy]-6-(hydroxymethyl)oxane-3,4,5-triol (2)

First Public Date

2026 (4)
2014 (2)
2025 (1)
2023 (1)

Modification

1x(15)N labeled L-valine (1)

Study type

Transcription profiling by array (32)
MicroRNA profiling by array (13)
Unknown experiment type (4)
Comparative genomic hybridization by array (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of coding RNA (2)
Human - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
Other (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (157)
2023 (156)
2021 (155)
2025 (145)
2024 (143)
2019 (126)
2020 (110)
2018 (105)
2016 (67)
2017 (59)
2014 (58)
2015 (56)
2012 (38)
2013 (36)
2010 (32)
2011 (28)
2026 (27)
2009 (17)
2008 (12)
2007 (11)
2006 (6)
2005 (6)
2002 (3)
2001 (2)
2003 (1)
2000 (1)

Lab affiliation

Baylor College of Medicine, Houston, TX 77030 (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA (1)
Department of Molecular Biology, Cell Biology, and Biochemistry/Center of Genomics and Proteomics, Brown University, Providence, Rhode Island 02903, USA (1)
Departments of Pediatrics and Genetics, Stanford University, Stanford, CA, USA. (1)
Division of Cardiovascular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, OX3 9DU, UK. (1)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) (1)
Helmholtz-Centre for Environmental Research - UFZ GmbH Department of Molecular Systems Biology Permoserstrasse 15 04318 Leipzig, Germany (1)
Max Planck Institute of Biochemistry Department of Proteomics and Signaltransduction Am Klopferspitz 18 D-82152 Martinsried (1)
Michael Barber Centre for Collaborative Mass Spectrometry Manchester Institute of Biotechnology Department of Chemistry The University of Manchester (1)
Neurodegeneration Pathobiology Laboratory, Queensland Brain Institute, The University of Queensland, Brisbane, QLD, Australia (1)
Precision Medicine Theme, South Australian Health and Medical Research Institute, Adelaide, SA, 5001, Australia (1)
Prof. Dr. Martin von Bergen Helmholtz Centre for Environmental Research - UFZ Head of Department for Molecular Systems Biology http://www.ufz.de/index.php?de=17634 Professor of Functional Proteomics Faculty of Life Sciences, Pharmacy and Psychology University of Leipzig Permoserstr. 15 04318 Leipzig GERMANY (1)
UCSF (1)
University of Copenhagen, Novo Nordisk Foundation Center for Basic Metabolic Research, Denmark (1)
University of Oxford (1)
University of Washington, Department of Genome Sciences (1)

Tags

xref:EuropePMC:PMC4756164 (1)

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Evidence for quorum sensing and differential metabolite production by Ruegeria pomeroyi in response to DMSP

Microbial alteration and remineralization of organic matter in the ocean play essential roles in the carbon cycle. The impact of individual compounds as either growth substrates or infochemicals is still poorly constrained in models, particularly for organisms with relatively versatile genomes. Here...

2015-01-29 | MTBLS157 | MetaboLights

Real-world study of the impact of recurrent/metastatic squamous cell carcinoma of the head and neck (R/M SCCHN) on quality of life and productivity in Europe.

Not available

S-EPMC8310582 | biostudies-literature

Phase 3 SELENE study: ibrutinib plus BR/R-CHOP in previously treated patients with follicular or marginal zone lymphoma.

Not available

S-EPMC10709678 | biostudies-literature

Large-Scale Sampling Reveals the Strain-Level Diversity of Burkholderia Symbionts in Riptortus pedestris and R. linearis (Hemiptera: Alydidae).

Not available

S-EPMC11434518 | biostudies-literature

Effects of cosmetics on the skin microbiome of facial cheeks with different hydration levels.

Not available

S-EPMC5911989 | biostudies-literature

HOspitals and patients WoRking in Unity (HOW R U?): telephone peer support to improve older patients' quality of life after emergency department discharge in Melbourne, Australia-a multicentre prospective feasibility study.

Not available

S-EPMC6009511 | biostudies-literature

Oligonucleotide catabolism-derived gluconucleosides in C. elegans

Oligonucleotide catabolism-derived gluconucleosides in C. elegans Brian J. Curtis, Tyler J. Schwertfeger, Russell N. Burkhardt, Bennett W. Fox, Jude Andrzejewski, Chester J. J. Wrobel, Jingfang Yu, Pedro R. Rodrigues, Arnaud Tauffenberger*, and Frank C. Schroeder* Boyce Thompson Institute and Depart...

ORGANISM(S): C. Elegans, C. Briggsae, P. Pacificus

2023-04-26 | MSV000091804 | MassIVE

Reducing Dietary Acrylamide Exposure from Wheat Products through Crop Management and Imaging.

Not available

S-EPMC9951245 | biostudies-literature

Association of microRNAs with CD68 and NOS2 in IBD tissues.

We analyzed the association of CD68 and NOS2 mRNA expression with microRNAs in IBD tissues. For this analysis, data was LOESS normalized in R. Data was then imported into Partek Genomics Suite and Batch effects caused by day to day variability (Dategroup of array charateristic) were corrected. We...

ORGANISM(S): Homo sapiens

2012-07-31 | E-GEOD-29703 | biostudies-arrayexpress

The impact of calorie restriction and diet-induced obesity on microRNA expression

We analyzed the impact of calorie restriction and diet-induced obesity on expression of microRNAs in the mouse colon. For this analysis, data was LOESS normalized in R. Data was then imported into BRB Array for analysis. We identified microRNAs that were altered in response to calorie-restriction ...

ORGANISM(S): Mus musculus

2014-04-30 | E-GEOD-56025 | biostudies-arrayexpress

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1612 Results

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