Cyanobacteria. - OmicsDI

Show results for

Unknown (5440)
Genomics (1906)
Proteomics (202)
Transcriptomics (187)
Metabolomics (75)
Other (11)
Models (4)
Methylation profiling (1)

Organisms

Synechocystis sp. PCC 6803 (78)
Synechococcus elongatus PCC 7942 = FACHB-805 (18)
Picosynechococcus sp. PCC 7002 (11)
Homo sapiens (10)
Drosophila melanogaster (7)
Nostoc sp. PCC 7120 = FACHB-418 (7)
Arabidopsis thaliana (5)
Danio rerio (5)
Parasynechococcus marenigrum WH 8102 (5)
Daphnia pulex (4)
Synechococcus sp. WH 7803 (4)
Rattus norvegicus (4)
Thermus thermophilus HB8 (3)
Nostoc punctiforme PCC 73102 (3)
Prochlorococcus marinus subsp. pastoris str. CCMP1986 (3)
Mus musculus (3)
Escherichia coli (2)
Anabaena (2)
Microcoleus vaginatus (2)
Synechococcus sp. CC9311 (2)
Prochlorococcus marinus (2)
mixed sample (2)
Caenorhabditis elegans (2)
Saccharomyces cerevisiae (2)
Candida albicans (2)
Prochlorococcus marinus str. MIT 9313 (2)
Prochlorococcus phage P-SSM4 (2)
Tiamatvirus PSSP7 (2)
Xenopus tropicalis (1)
Pseudomonas aeruginosa (1)

Organisms

hot springs metagenome (373)
organismal metagenomes (113)
Synechocystis sp. PCC 6803 (54)
synthetic metagenome (36)
freshwater metagenome (28)
Synechococcus elongatus PCC 7942 = FACHB-805 (20)
marine metagenome (19)
soil metagenome (17)
microbial mat metagenome (14)
Cyanobacteriota (12)
Cyanobacteria bacterium (9)
aquatic metagenome (9)
lake water metagenome (9)
biocrust metagenome (9)
Picosynechococcus sp. PCC 7002 (8)
seawater metagenome (7)
moss metagenome (6)
Homo sapiens (6)
mixed culture metagenome (5)
sediment metagenome (5)
terrestrial metagenome (4)
Nostoc sp. PCC 7120 = FACHB-418 (4)
Danio rerio (4)
Arabidopsis thaliana (4)
Leptolyngbya ohadii IS1 (3)
uncultured cyanobacterium (3)
Synechococcus elongatus (3)
stromatolite metagenome (3)
Daphnia pulex (3)
sponge metagenome (3)

Repository

ENA (1893)
pride (146)
geo (137)
biostudies-arrayexpress (65)
GNPS (50)
MassIVE (39)
MetaboLights (24)
iProX (19)
BioModels (4)
jPOST (3)
NODE (3)
EGA (1)
MetabolomicsWorkbench (1)
PAXDB (1)

Tissue

Cell culture (25)
Photosynthetic cell (24)
Cell suspension culture (5)
Whole body (4)
Plant cell (2)
Cultured cells (1)
Culture condition:-induced cell (1)
Nitrogen fixing cell (1)
Bacteroid (1)
Primary culture (1)
Bacterial protein (1)
Prokaryotic cell (1)
Root (1)
Leaf (1)
Hepatocyte (1)
Liver (1)

Disease

Disease free (5)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (147)
Shotgun proteomics (82)
Bottom-up proteomics (33)
Data-dependent acquisition (20)
Mass spectrometry (15)
Data-independent acquisition (15)
Mass spectrometry assay (9)
Gel-based experiment (6)
Affinity purification coupled with mass spectrometry proteomics (6)
SRM/MRM (3)
Top-down proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Mass spectrometry imaging (2)
ESI (1)
Metaproteomics (1)
Proteogenomics (1)
Affinity proteomics (1)
DiaPASEF (1)
HDMSE (1)
SWATH MS (1)

Instrument Platform

Q Exactive (13)
Q Exactive HF (10)
MaXis (9)
LTQ Advantage Max spectrometer (6)
LTQ Orbitrap Elite (6)
Impact II (5)
Q Exactive Plus (4)
LCQ Advantage (3)
LTQ XL (3)
TimsTOF Pro (3)
Synapt G2-S MS (2)
LCQ Classic (2)
Impact (2)
Thermo QExactive (2)
QTof (2)
ITMS (2)
Orbitrap Exploris 120 (2)
LTQ Orbitrap (2)
Q Exactive HF-X (2)
NextSeq 500 (1)
BioTOF II (1)
TEMPUS TOF (1)
6546 Quadrupole Time-of-Flight LC/MS (1)
Xevo G2-XS QTof (1)
MicroQTOF (1)
ACQUITY UPLC H-Class (1)
6530A Q-TOF LC/MS (1)
MicroTOF LC (1)
LTQ FT (1)
6546 LC/Q-TOF, Agilent, USA (1)

Publication Date

2024 (47)
2025 (47)
2026 (42)
2023 (42)
2021 (35)
2022 (33)
2014 (32)
2015 (26)
2019 (26)
2013 (25)
2020 (20)
2012 (16)
2017 (15)
2018 (14)
2016 (13)
2008 (11)
2010 (10)
2011 (8)
2009 (6)
2007 (3)
2006 (2)

UNIPROT ID/AC

P04483 (1)
P03023 (1)
SYFA_SYNY3 (1)
EFP_SYNY3 (1)
SLAP_SYNY3 (1)
G3P2_SYNY3 (1)
P74643_SYNY3 (1)
PGK_SYNY3 (1)
Q55712_SYNY3 (1)
RBS_SYNY3 (1)
P74753_SYNY3 (1)
PSB27_SYNY3 (1)
ARLY_SYNY3 (1)
RPOB_SYNY3 (1)
YZ37_SYNY3 (1)
CCMK2_SYNY3 (1)
P72630_SYNY3 (1)
P74255_SYNY3 (1)
P73489_SYNY3 (1)
P73606_SYNY3 (1)
Q55375_SYNY3 (1)
P74145_SYNY3 (1)
DAPB_SYNY3 (1)
CCMK1_SYNY3 (1)
P74534_SYNY3 (1)
G3P1_SYNY3 (1)
P72573_SYNY3 (1)
P73159_SYNY3 (1)
UREG_SYNY3 (1)
CPXS1_SYNY3 (1)

CHEBI ID

CHEBI:30769 (7)
CHEBI:16708 (7)
CHEBI:30746 (6)
CHEBI:17821 (6)
CHEBI:17596 (6)
CHEBI:16335 (6)
CHEBI:30915 (6)
CHEBI:17533 (6)
CHEBI:30805 (5)
CHEBI:17992 (5)
CHEBI:28875 (5)
CHEBI:28842 (5)
CHEBI:17295 (5)
CHEBI:26078 (5)
CHEBI:18012 (5)
CHEBI:15756 (5)
CHEBI:16704 (5)
CHEBI:17568 (5)
CHEBI:15741 (5)
CHEBI:17368 (5)
CHEBI:16235 (5)
CHEBI:4828 (4)
CHEBI:34900 (4)
CHEBI:16566 (4)
CHEBI:18019 (4)
CHEBI:16015 (4)
CHEBI:15940 (4)
CHEBI:17509 (4)
CHEBI:17361 (4)
CHEBI:61448 (1)

Metabolite Name

Glycocholic acid (6)
Nitrofurazone (5)
Phthalic acid (5)
Benzoic acid (5)
Deoxycholic acid (5)
Azelaic acid (5)
Myristic acid (5)
Uracil (5)
Adenosine (5)
Uridine (5)
Minocycline (4)
Amastatin (4)
Taurohyodeoxycholic acid (4)
O-Acetylserine (4)
Heptadecanoic acid (4)
Methylsuccinic acid (4)
4-Hydroxyproline (4)
2-Aminoisobutyric acid (4)
Pentadecanoic acid (4)
Ketoleucine (4)
Gly-Ala (4)
Phosphate (4)
Ursodeoxycholic acid (4)
Thymine (4)
5'-Methylthioadenosine (4)
7-Methylguanine (4)
Pantothenic acid (4)
Stercobilin (4)
Tauroursodeoxycholic acid (4)
4-Hydroxybenzaldehyde (4)

First Public Date

2025 (524)
2026 (176)
2019 (167)
2024 (159)
2017 (145)
2021 (119)
2023 (113)
2020 (87)
2022 (80)
2014 (75)
2013 (68)
2018 (60)
2015 (58)
2016 (54)
2012 (6)
2011 (1)
2010 (1)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (2)

Lab affiliation

University of the Balearic Islands (6)
Departamento de Bioquímica y Biología Molecular. Edificio Severo Ochoa, planta 1, ala Este. Campus de Rabanales. Universidad de Córdoba. 14071-Córdoba. Spain. (5)
Friedrich Schiller University Jena (3)
Pacific Northwest National Laboratory, USA (3)
Xiamen University, China (2)
Albert-Ludwigs-Universität Freiburg, Institut für Biologie III, Schänzlestr. 1, 79104 Freiburg, Germany (2)
Institut für Biowissenschaften, Abteilung Pflanzenphysiologie, Universität Rostock, A.-Einstein-Str. 3, Rostock D-18059, Germany (2)
Department of Biotechnology, Faculty of Converging Sciences and Technologies, Islamic Azad University, Science and Research Branch, Tehran, Iran, Mailbox: 775/14515, Postcode: 1477893855, ORCID: 0000-0001-6656-777X (2)
State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, No.1 West Beichen Rd., Beijing 100101, China (2)
Quantitative proteomics University of Tuebingen Auf der Morgenstelle 15 72076 Tuebingen Germany (2)
Head of Microbiology Unit, SCKCEN (2)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (2)
University of Southern California (2)
University of Washington (2)
University of Calgary (2)
Department of Bioactivity and Food Analysis, Institute of Food Science Research (CIAL, CSIC-UAM, CEI UAM+CSIC), Nicolás Cabrera 9, 28049 Madrid, Spain (2)
Head Microbiology Unit, SCK CEN, Belgium (1)
Science for Life Laboratory, School of Biotechnology, KTH – Royal Institute of Technology, Stockholm, Sweden. (1)
Universidade Federal do Paraná (1)
Marine Chemistry/Geochemistry Woods Hole Oceanographic Institution USA (1)
Institute for Surgical Pathology, Medical Center – University of Freiburg, Faculty of Medicine, University of Freiburg, Germany (1)
Genetics and Experimental Bioinformatics, Faculty of Biology, University of Freiburg, Schänzlestr. 1, 79104 Freiburg, Germany (1)
Molecular Proteomics Laboratory (MPL) Biologisch-Medizinisches Forschungszentrum (BMFZ) Heinrich-Heine-Universität Düsseldorf Universitätsstraße 1 40225 Düsseldorf (1)
University of New South Wales, School of Biotechnology and Biomolecular Sciences (1)
MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, United States. Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, United States. (1)
Department of Biochemistry, University of California, Riverside, USA (1)
Department of Biochemistry & Molecular Biology Michigan State University (1)
Principle Investigator • Institute Fellow • Assistant Professor Department of Chemistry and Biochemistry & Renewable and Sustainable Energy Institute (1)
Instituto de Bioquimica Vegetal y Fotosintesis CSIC Americo Vespucio 49. 41092. Seville (Spain). (1)
Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, Shandong, China (1)

IsPrivate

False (4)

Model Flag

Non Kinetic (2)

Classification

bacteria (2)
fungi (1)
viruses (1)

Modification

4x(2)H labeled dimethylated residue (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (54)
RNA-seq of coding RNA (8)
Transcription profiling by tiling array (1)
Other (1)
ChIP-seq (1)

Release Date

2022 (541)
2021 (520)
2023 (468)
2020 (455)
2024 (419)
2025 (418)
2018 (328)
2019 (311)
2017 (272)
2016 (257)
2015 (249)
2014 (216)
2013 (195)
2012 (146)
2011 (120)
2010 (87)
2008 (79)
2009 (73)
2026 (60)
2007 (58)
2006 (51)
2004 (34)
2005 (33)
2002 (28)
2003 (21)
2001 (21)
1999 (15)
1998 (15)
2000 (11)
1997 (3)

Previous page
1 / 783
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 783
Next page

Sort by:

Relevance

Page size

High-density CRISPRi screens reveal adaptive transcriptional gradients in cyanobacteria

Cyanobacteria are the oldest form of photosynthetic life and contribute to primary production in nearly every habitat, from permafrost to hot springs. Despite longstanding interest in the biochemical basis of environmental adaptation in these microbes, it remains poorly understood. Here we used a hi...

ORGANISM(S): Synechococcus Sp. Pcc 7002 (ncbitaxon:32049)

2024-04-18 | MSV000094564 | MassIVE

Columbamide

Combining Mass Spectrometric Metabolic Profiling with Genomic Analysis: A Powerful Approach for Discovering New Natural Products from Cyanobacteria Karin Kleigrewe, Jehad Almaliti, Isaac Yuheng Tian, Robin B. Kinnel, Anton Korobeynikov, Emily A. Monroe, Brendan M. Duggan, Vincenzo Di Marzo, David ...

ORGANISM(S): Cyanobacteria (ncbitaxon:1117)

2015-01-26 | MSV000079016 | MassIVE

A thylakoid biogenesis BtpA protein is required for the initial step of tetrapyrrole biosynthesis in cyanobacteria

Biogenesis of the photosynthetic apparatus requires complicated molecular machinery, individual components of which are either poorly characterized or unknown. The BtpA protein has been described as a factor required for the stability of Photosystem I (PSI) in cyanobacteria; however, how the BtpA st...

ORGANISM(S): Synechocystis Sp. Pcc 6803 (ncbitaxon:1148)

2023-07-13 | MSV000092431 | MassIVE

Chroococcidiopsis thermalis strain:cyanobacteria | isolate:cyanobacteria

Chroococcidiopsis thermalis strain:cyanobacteria | isolate:cyanobacteria Genome sequencing

PRJNA1313782 | ENA

Leptolyngbya sp. strain:cyanobacteria | isolate:cyanobacteria

Leptolyngbya sp. strain:cyanobacteria | isolate:cyanobacteria Genome sequencing

PRJNA1313776 | ENA

Fischerella muscicola strain:cyanobacteria | isolate:cyanobacteria

Fischerella muscicola strain:cyanobacteria | isolate:cyanobacteria Genome sequencing

PRJNA1313777 | ENA

cyanobacteria