Cyclin-4 - OmicsDI

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Genomics (3068)
Unknown (1957)
Transcriptomics (1877)
Proteomics (107)
Models (15)
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Organisms

Homo sapiens (3625)
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Organisms

Homo sapiens (169)
Mus musculus (86)
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human skin metagenome (1)
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Repository

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Disease

Breast cancer (10)
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Normal renal cortex (1)
B-cell chronic lymphocytic leukemia (1)
Acute myeloid leukaemia (1)
Schizophrenia (1)
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AML (1)
Infected (1)
Multiple congenital malformation (1)
IBDV infected (1)
Leukemia (1)
Melanoma (1)
Colon adenocarcinoma (1)
Exposed_Seronegative (1)
Adenoid cystic carcinoma (1)
Melanoma (1)
Acute promyelocytic leukemia (1)
Osteosarcoma (1)
Hepatocellular carcinoma (1)
Prostate carcinoma (1)
Adenocarcinoma (1)

Technology Type

Mass Spectrometry (36)
Shotgun proteomics (14)
Bottom-up proteomics (11)
Mass spectrometry (6)
Mass spectrometry assay (6)
Affinity purification coupled with mass spectrometry proteomics (4)
Gel-based experiment (4)
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Top-down proteomics (3)
Illumina HiSeq 2500, ILLUMINA (2)
Illumina HiSeq 2000 (2)
Data-independent acquisition (2)
Illumina HiSeq 4000, ILLUMINA (1)
ILLUMINA, Illumina MiSeq (1)
Illumina MiSeq (1)
Illumina HiSeq 2000, ILLUMINA (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (34)
Illumina HiSeq 2500 (26)
NextSeq 500 (16)
Illumina HiSeq 2000 (14)
Illumina HiSeq 4000 (9)
Illumina NovaSeq X (8)
Illumina MiSeq (7)
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12 well TC-treated plate, LETs buffer, dry ice (1)
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G2565BA DNA microarray scanner (1)
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PCR Applied Biosystems (1)
Qubit (1)
BDRhapsody (1)
Gene Expression Hybridisation Kit (Agilent Technologies) (1)
Low Input Quick Amp Labeling Kit (Agilent Technologies), ND-1000 Spectrophotometer (NanoDrop Technologies), Bioanalyser system (Agilent Technologies) (1)
Spectrum™ Plant Total RNA Kit (Sigma Aldrich), Bioanalyser system (Agilent Technologies) (1)

Publication Date

2013 (238)
2015 (231)
2010 (225)
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2012 (204)
2011 (182)
2008 (158)
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2017 (24)
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2019 (20)
2018 (19)
2004 (9)
2006 (8)
2003 (1)
2002 (1)

UNIPROT ID/AC

P53197 (5)
P24869 (5)
P26309 (5)
P32562 (3)
P38987 (3)
P40316 (3)
P47035 (3)
Q03018 (3)
P27636 (3)
Q00684 (3)
P38634 (3)
P11746 (3)
P20438 (3)
Q00362 (2)
P00546 (2)
O14467 (2)
P30283 (2)
P08153 (2)
P47817 (1)
P30311 (1)
P23748 (1)
P32944 (1)
Q08471 (1)
Q10752 (1)
P01097 (1)
Q08887 (1)
P41813 (1)
P20437 (1)
P35567 (1)
Q61501 (1)

CHEBI ID

CHEBI:16347 (3)
CHEBI:17924 (2)
CHEBI:17750 (2)
CHEBI:33704 (1)
CHEBI:62753 (1)
CHEBI:16774 (1)
CHEBI:192721 (1)
CHEBI:167857 (1)
CHEBI:135425 (1)
CHEBI:145744 (1)
CHEBI:81598 (1)
CHEBI:176783 (1)
CHEBI:135101 (1)
CHEBI:171853 (1)
CHEBI:194904 (1)
CHEBI:191484 (1)
CHEBI:47083 (1)
CHEBI:34275 (1)
CHEBI:176794 (1)
CHEBI:142615 (1)
CHEBI:171871 (1)
CHEBI:146780 (1)
CHEBI:202379 (1)
CHEBI:142603 (1)
CHEBI:181994 (1)
CHEBI:145716 (1)
CHEBI:38732 (1)
CHEBI:23816 (1)
CHEBI:135204 (1)
CHEBI:144334 (1)

Metabolite Name

Glycine (3)
L-Phenylalanine (3)
Gamma-Aminobutyric acid (2)
Cystathionine (2)
Histidine (2)
Ureidopropionic acid (2)
Leucine (2)
Threonic acid (2)
Fructose 6-phosphate (2)
Dimethylglycine (2)
Valine (2)
Betaine (2)
Homocysteine (2)
O-Phosphoethanolamine (2)
Carnosine (2)
Ornithine (2)
Pyridoxine (2)
Hydroxyproline (2)
1-Methylhistidine (2)
Methionine sulfoxide (2)
Methionine (2)
Choline (2)
Lactate (2)
Pipecolic acid (2)
Adenosine (2)
Histamine (2)
Cytosine (2)
Alanine (2)
Threonine (2)
Sarcosine (2)

IsPrivate

False (12)

First Public Date

2014 (71)
2025 (40)
2026 (32)
2023 (31)
2021 (31)
2024 (20)
2020 (14)
2019 (12)
2017 (11)
2018 (9)
2015 (9)
2022 (8)
2016 (6)
2013 (3)

Modelling Approach

Ordinary differential equation model (12)

Study type

Transcription profiling by array (1292)
RNA-seq of coding RNA (174)
ChIP-seq (66)
Comparative genomic hybridization by array (53)
Unknown experiment type (47)
Methylation profiling by array (35)
ChIP-chip by tiling array (25)
RNA-seq of non coding RNA (19)
Methylation profiling by high throughput sequencing (17)
Other (15)
Transcription profiling by RT-PCR (11)
Genotyping by array (9)
RNAi profiling by array (8)
ChIP-chip by array (7)
RNA-seq of coding RNA from single cells (7)
Transcription profiling by SAGE (6)
Animal - High-throughput sequencing (5)
Transcription profiling by tiling array (5)
MicroRNA profiling by array (5)
DNA-seq (5)
RNA-seq of total RNA (5)
Cell line - High-throughput sequencing (4)
ATAC-seq (4)
High-throughput sequencing (3)
Animal - Single-cell sequencing (2)
Proteomic profiling by array (2)
ChIP-chip by SNP array (1)
Transcription profiling by MPSS (1)
Two-color microarray (1)
Differential (1)

Release Date

2015 (310)
2013 (281)
2014 (268)
2010 (262)
2012 (243)
2022 (226)
2011 (220)
2025 (212)
2021 (210)
2023 (201)
2016 (185)
2024 (170)
2008 (169)
2020 (159)
2018 (141)
2009 (127)
2019 (127)
2017 (107)
2007 (62)
2026 (46)
2005 (28)
2006 (15)
2004 (14)
2002 (6)
2003 (5)
1998 (3)
2001 (2)
2000 (2)
1999 (2)
1997 (1)

Lab affiliation

Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland (3)
George Washington University (2)
- University of Cambridge, Department of Genetics, Downing Street, Cambridge CB2 3EH, UK - Division of Biology and Biological Engineering, California Institute of Technology, 1200 E. California Blvd, Pasadena, California 91125, USA (1)
Assistant Professor, Department of Internal medicine, Morsani College of Medicine, University of South Florida (1)
Assistant professor, Department of Internal medicine,Morsani college of Medicine, University of South Florida (1)
Biomolecular Mass Spectrometry and Proteomics Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands (1)
Breast Center, Baylor College of Medicine, Houston, TX US (1)
Cancer Research UK Newcastle Drug Discovery Unit, Newcastle University, Newcastle upon Tyne, United Kingdom (1)
Center for Integrative Genomics, CIG, UNIL Sorge, CH1015 Lausanne, Switzerland (1)
DIVAS, University of Milan (1)
Department of Biomedical Sciences, Faculty of Medicine and Health Sciences, Macquarie University, North Ryde, NSW, 2109, Australia (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Department of Cell Biology and Physiology Lineberger Comprehensive Cancer Center University of North Carolina at Chapel Hill 450 West Drive Lineberger Building CB#7295 Chapel Hill, NC, 27599, USA. Telephone: (919)-259-2695. (1)
Department of Cell Biology, Harvard Medical School, Boston, USA (1)
Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, MI 48824, United States. (1)
Department of Genetics, Cell Biology, and Development, University of Minnesota, 4-208 MCB, 420 Washington Avenue SE, Minneapolis, MN 55455. Tel: 612-624-3955; FAX: 612-626-6140. (1)
Department of Medicinal Chemistry, University of Michigan, United States of America (1)
Departments of Pediatrics and Genetics, Stanford University, Stanford, CA, USA. (1)
Discovery Proteomics Laboratory, University of Oxford, UK (1)
ICR, Functional Proteomics (1)
IRCCS Istituto G Gaslini (1)
IRIC-Université de Montréal (1)
Institut Pasteur (1)
Lecturer School of Cardiovascular and Metabolic Medicine & SciencesKing's College London (1)
Memorial Sloan Kettering Cancer Center Department of Molecular Pharmacology (1)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (1)
Peter MacCallum Cancer Centre, 305 Grattan St Melbourne VIC 3000 (1)
QIMR Berghofer Medical Research Institute, Brisbane 4006, Queensland, Australia Faculty of Health, Queensland University of Technology, Brisbane 4000, Queensland, Australia Faculty of Medicine, The University of Queensland, Brisbane 4072, Queensland, Australia (1)
RC Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Headington, Oxford OX3 9DS 2Edinburgh Cancer Research, CRUK Scotland Centre, Institute of Genetics and Cancer, University of Edinburgh, Crewe Road South, EH4 2XU, Edinburgh, UK (1)
Swiss Institute for Experimental Cancer Research (ISREC), Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland (1)

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Cell Cycle Transcription by Coupled CDK and Network Oscillators

A significant fraction of the Saccharomyces cerevisiae genome is transcribed periodically during the cell division cycle, indicating that properly timed gene expression is important for regulating cell-cycle events. Genomic analyses of the localization and expression dynamics of transcription factor...

2681 | Cell Collective

Toxoplasma gondii Cyclin-4 Interactome

Toxoplasma endodyogeny is governed by a set of Cdk-related kinases (Crk). In this study we investigated TgCrk4 and its cyclin partner TgCyc4. This complex regulates many cell cycle related processes at the G2 phase. To beter undestand the funtion of the TgCrk4/TgCyc4 complex we analyzed the interact...

ORGANISM(S): Toxoplasma gondii ME49

2024-06-16 | PXD043994 | Pride