Cytochrome c oxidase

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Corynebacterium glutamicum ATCC 13032 (3)
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Organisms

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Disease

Brain disease (2)
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Uninfected 11dpi (1)
Cytochrome-c oxidase deficiency disease (1)
Fibrosarcoma (1)
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Technology Type

Mass Spectrometry (60)
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Data-dependent acquisition (6)
Gel-based experiment (6)
Mass spectrometry assay (5)
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SWATH MS (2)
All-ion fragmentation (1)
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Data-independent acquisition (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

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Agilent High resolution C scanner (4)
NextSeq 500 (4)
Illumina HiSeq 2000 (3)
Gas Chromatography MS - positive (3)
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GenePix 4000A [Axon Instruments] (2)
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Liquid Chromatography MS - positive - hilic (2)
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2004 (1)

CHEBI ID

CHEBI:15422 (3)
CHEBI:6650 (3)
CHEBI:30769 (3)
CHEBI:9048 (2)
CHEBI:140104 (2)
CHEBI:9046 (2)
CHEBI:7607 (2)
CHEBI:57865 (2)
CHEBI:2899 (2)
CHEBI:80373 (2)
CHEBI:60377 (2)
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CHEBI:17980 (1)
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CHEBI:16189 (1)
CHEBI:17709 (1)
CHEBI:17561 (1)
CHEBI:15377 (1)
CHEBI:24636 (1)
CHEBI:16288 (1)
CHEBI:18361 (1)
CHEBI:15379 (1)
CHEBI:15351 (1)
CHEBI:16236 (1)
CHEBI:16761 (1)
CHEBI:16908 (1)
CHEBI:15846 (1)

Metabolite Name

Guanine (5)
Adenine (5)
Adenosine (4)
Hypoxanthine (4)
Malate (3)
Uracil (3)
Pyroglutamic acid (3)
Propionic acid (3)
Isovaleric acid (3)
Nicotinamide (3)
Valeric acid (3)
Pipecolic acid (3)
Fructose (3)
Citrate (3)
Pyruvate (3)
Cytidine (3)
Guanosine (3)
Thymidine (3)
2-Mercaptobenzothiazole (3)
Tyr-His (2)
Asn-Arg (2)
Phe-His (2)
Astringin (2)
N-Acetylglucosamine 1-phosphate (2)
Agnuside (2)
Isoquercitrin (2)
Neohesperidin (2)
Trifolirhizin (2)
Deoxynivalenol (2)
2-Hydroxyglutarate (2)

IsPrivate

False (1)

First Public Date

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2022 (21)
2020 (21)
2021 (19)
2019 (17)
2018 (12)
2014 (12)
2016 (9)
2017 (7)
2015 (7)
2013 (5)

Classification

bacteria (6)
helminths (2)
fungi (2)
protozoa (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (186)
RNA-seq of coding RNA (31)
Unknown experiment type (10)
Animal - One-color microarray (3)
Transcription profiling by SAGE (2)
Animal - High-throughput sequencing (2)
ChIP-chip by array (2)
Other (2)
ChIP-seq (2)
ChIP-chip by tiling array (1)
Cell line - High-throughput sequencing (1)
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Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
RIP-seq (1)
Methylation profiling by array (1)

Release Date

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2006 (33)
2005 (29)
2004 (18)
2003 (16)
2002 (13)
1998 (10)
2001 (8)
2000 (7)
1999 (5)
1997 (3)

Lab affiliation

Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (6)
University of Miami School of Medicine (4)
Laboratory of Bioenergetics Institute of Physiology, Czech Academy of Sciences Prague Czech Republic (2)
Research Unit for Molecular Medicine, Department of Clinical Medicine, Aarhus University and Aarhus University Hospital, Aarhus, Denmark (2)
School of Molecular Sciences, The University of Western Australia, Perth, WA, Australia. harvey.millar@uwa.edu.au. The ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, Perth, WA, Australia. harvey.millar@uwa.edu.au. (2)
Assistant Professor, Department of Biochemistry, University of Calcutta, Kolkata, India (1)
BioMediTech & Tampere University Hospital, Faculty of Medicine and Health Technology, Tampere University, Arvo Ylpön katu 34 (ARVO), FI-33520 Tampere, Finland (1)
Biochemistry & Molecular Biology (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht (1)
Cell Biology Department Harvard Medical School (1)
Center for Molecular Medicine and Genetics, Wayne State University, Detroit, MI 48201, USA (1)
Centre for Environmental Biotechnology, Bangor University, Deiniol Rd, Bangor, LL57 2UW, UK School of Natural Sciences, Bangor University, Deiniol Rd, Bangor, LL57 2UW, UK (1)
College of Biomedical Engineering & Instrument Science,Zhejiang University (1)
College of Life Sciences, Wuhan University, Wuhan 430072, China (1)
Departamento de Genética Molecular, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, México City, México (1)
Department of Biochemistry & Pharmacology, University of Melbourne, Australia (1)
Department of Biochemistry and Molecular Biology Bio21 Molecular Science & Biotechnology Institute and The University of Melbourne 30 Flemington Road, Parkville VIC 3052 Australia (1)
Department of Biochemistry and Pharmacology, School of Biomedical Sciences, The University of Melbourne, Australia (1)
Department of Biochemistry and Pharmacology, The Bio21 Molecular Science & Biotechnology Institute, University of Melbourne, Melbourne, Australia (1)
Department of Clinical Neurosciences, School of Clinical Medicine, University of Cambridge, Cambridge, UK (1)
Department of Fundamental Neurosciences, University of Lausanne, Lausanne, Switzerland (1)
Department of Laboratory Medicine and Pathology Mayo Clinic Rochester, Minnesota 55905 United States (1)
Department of Microbiology, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia (1)
Department of Pathology, Microbiology, and Immunology; Vanderbilt University Medical Center; Nashville, TN, USA (1)
Department of Pharmacology, Brain Korea 21 PLUS Project for Medical Sciences, Yonsei University College of Medicine, Seoul 03722, Korea (1)
Friedrich-Baur-Institute, Dept. of Neurology, University of Munich, 80336 Munich, Germany (1)
Fungal Biodiversity and Biotechnology Laboratory team "Responses and adaptation of fungi to environmental constraints" 163 Avenue de Luminy, CP925 13288 Marseille, Cedex 9, FRANCE (1)
Genome Center of Wisconsin,Department of Chemistry, Department of Biomolecular Chemistry, and DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI 53706, USA Morgridge Institute for Research, Madison, WI 53706, USA (1)
Helmholtz-Centre for Environmental Research - UFZ Department of Molecular Systems Biology Permoserstrasse 15 04318 Leipzig, Germany (1)
Institute of Molecular Biology (IMB) Ackermannweg 4 (1)

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Evidence for a key role of cytochrome bo3 oxidase in respiratory energy metabolism of Gluconobacter oxydans

The obligatory aerobic acetic acid bacterium Gluconobacter oxydans oxidizes a variety of substrates in the periplasm by membrane-bound dehydrogenases, which transfer the reducing equivalents to ubiquinone. Two quinol oxidases, cytochrome bo3 and cytochrome bd, then catalyze transfer of the electrons...

ORGANISM(S): Gluconobacter oxydans 621H

2013-07-26 | E-GEOD-47782 | biostudies-arrayexpress

Comparison of Partially Denatured Cytochrome c Structural Ensembles in Solution and Gas Phases Using Cross-Linking Mass Spectrometry

Datasets in the publication Comparison of Partially Denatured Cytochrome c Structural Ensembles in Solution and Gas Phases Using Cross-Linking Mass Spectrometry

ORGANISM(S): Equus Caballus

2025-05-22 | PXD064154 | JPOST Repository

Characterization of the proteome of human cytochrome c oxidase assembly factors - Experiment C

Mitochondrial cytochrome c oxidase (CcO) or respiratory chain complex IV is a heme aa3-copper oxygen reductase containing metal centers essential for holo-complex biogenesis and enzymatic function that are assembled by subunit-specific metallochaperones. The enzyme has two copper sites located in th...

ORGANISM(S): Homo sapiens (Human)

2022-08-12 | PXD034579 | Pride

Characterization of the proteome of human cytochrome c oxidase assembly factors - Experiment A

ORGANISM(S): Homo sapiens (Human)

2022-08-12 | PXD034576 | Pride

Cox19 Pet191 Mitochondria Cytochrome c oxidase Cox11

Characterization of the proteome of human cytochrome c oxidase assembly factors - Experiment B

ORGANISM(S): Homo sapiens (Human)

2022-08-12 | PXD034578 | Pride

Cox19 Pet191 Mitochondria Cytochrome c oxidase Cox11

Characterization of the proteome of human cytochrome c oxidase assembly factors - Experiment D

ORGANISM(S): Homo sapiens (Human)

2022-08-12 | PXD034577 | Pride

Cox19 Pet191 Mitochondria Cytochrome c oxidase Cox11

COX6B1 secures a redox-sensitive step in early cytochrome c oxidase assembly

COX6B is one of the eleven nuclear-encoded subunits of the human mitochondrial inner-membrane cytochrome c oxidase (cIV), which is located in the intermembrane space-facing region of cIV. In mammals, there are two COX6B isoforms: the ubiquitous isoform COX6B1, expressed in all cell types and tissues...

ORGANISM(S): Homo sapiens (Human)

2025-12-15 | PXD061621 | Pride

Mitochondria Alternative oxidase (aox) Cytochrome c oxidase Respiratory chain biogenesis

Chip-chip analysis of C. glutamicum SigC

Bacteria modify expression of different types of terminal oxidase in response to oxygen availability. Corynebacterium glutamicum, a facultative anaerobic bacterium in Actinobacteria, possesses aa3-type cytochrome c oxidase and cytochrome bd-type quinol oxidase, the latter of which is induced upon ox...

ORGANISM(S): Corynebacterium glutamicum

2016-08-22 | E-GEOD-72452 | biostudies-arrayexpress

COX6B1 secures a redox-sensitive step in early cytochrome c oxidase assembly

ORGANISM(S): Homo sapiens (Human)

2025-12-15 | PXD061618 | Pride

Mitochondria Alternative oxidase (aox) Cytochrome c oxidase Respiratory chain biogenesis Complexome profiling

Influence of oxygen limitation, absence of the cytochrome bc1 complex and low pH on global gene expression in Gluconobacter oxydans 621H using DNA microarray technology

The genome-wide transcriptional responses of the strictly aerobic -proteobacterium Gluconobacter oxydans 621H to oxygen limitation, to the absence of the cytochrome bc1 complex, and to low pH were studied using DNA microarray analyses. Oxygen limitation caused expression changes of 486 genes, repres...

ORGANISM(S): Gluconobacter oxydans 621H

2012-03-23 | E-GEOD-34294 | biostudies-arrayexpress

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