Dale H H - OmicsDI

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Unknown (789)
Transcriptomics (93)
Proteomics (28)
Genomics (25)
Metabolomics (4)
Other (2)
Models (1)

Organisms

Homo sapiens (101)
Drosophila melanogaster (14)
Arabidopsis thaliana (4)
Mus musculus (4)
Escherichia coli (4)
Coxiella burnetii (2)
Klebsiella pneumoniae (2)
Klebsiella variicola (2)
Staphylococcus aureus (2)
Streptococcus pyogenes (2)
Chordata (1)
Staphylococcus aureus subsp. aureus MSSA476 (1)
Blumeria graminis (1)
Lotus japonicus (1)
Mycobacterium tuberculosis (1)
Oncorhynchus mykiss (1)
Mycobacterium tuberculosis H37Rv (1)
Oryza sativa Japonica Group (1)
Gallus gallus (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (94)
EGA (23)
pride (23)
MetaboLights (4)
GPMDB (2)
jPOST (2)
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ENA (1)

Tissue

Cell culture (10)
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Blood (3)
Blood cell (2)
Brain (1)
Breast (1)
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Monocyte (1)
Pancreas (1)

Disease

Breast cancer (2)
Not Available (2)
Warburg micro syndrome (2)
Kabuki syndrome (1)
Obsessive-compulsive disorder (1)
Pancreatic ductal adenocarcinoma (1)
Warburg micro syndrome 4 (1)

Technology Type

Mass Spectrometry (23)
Shotgun proteomics (8)
Mass spectrometry (4)
Data-dependent acquisition (4)
SWATH MS (4)
Affinity purification coupled with mass spectrometry proteomics (3)
All-ion fragmentation (2)
Illumina Genome Analyzer II (1)
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MSE (1)

Instrument Platform

NextSeq 500 (3)
Instrument (2)
Agilent Technologies Scanner G2505C (1)
G2505A DNA microarray scanner [Agilent] (1)
Illumina NovaSeq X (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap Velos (1)
Q Exactive (1)
ACQUITY TQD (Waters) (1)
Agilent 5975E GC/MSD (Agilent) (1)
Liquid Chromatography MS - alternating - hilic (1)
Q-TOF Premier (Waters) (1)
Xevo G2 QTOF (Waters) (1)

Publication Date

2010 (16)
2005 (14)
2006 (13)
2014 (11)
2013 (9)
2021 (9)
2024 (8)
2012 (6)
2026 (5)
2015 (5)
2011 (5)
2009 (4)
2025 (3)
2007 (3)
2019 (3)
2020 (3)
2023 (2)
2018 (2)
2017 (2)
2008 (2)
2002 (1)
2016 (1)

UNIPROT ID/AC

P05937 (1)
P20472 (1)

CHEBI ID

CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:16010 (2)
CHEBI:16171 (2)
CHEBI:16960 (2)
CHEBI:17234 (2)
CHEBI:17620 (2)
CHEBI:17754 (2)
CHEBI:17822 (2)
CHEBI:18237 (2)
CHEBI:22211 (2)
CHEBI:22653 (2)
CHEBI:22660 (2)
CHEBI:28300 (2)
CHEBI:30769 (2)
CHEBI:30860 (2)
CHEBI:36090 (2)
CHEBI:36281 (2)
CHEBI:37654 (2)
CHEBI:6650 (2)
CHEBI:16595 (1)
CHEBI:18420 (1)
CHEBI:25107 (1)
CHEBI:29108 (1)
CHEBI:132546 (1)
CHEBI:13389 (1)
CHEBI:135063 (1)
CHEBI:136772 (1)
CHEBI:137501 (1)

Metabolite Name

Caffeic acid (2)
Ferulic acid (2)
P-coumaric acid (2)
1,2,4-benzenetriol (1)
1,6-anhydroglucose (1)
1-hydroxy-2-piperidinone (1)
10.91 450 dehydro-CHO (1)
11.82 319 sugar (1)
12.98 235 glycoside (1)
13.15 341 299 315 (1)
13.53 255 179 salicyl-HCH (1)
13.67 180 glycoside (1)
13.75 445 171 glycoside (1)
13.95 258 alcohol glycoside (1)
14.49 284 glycoside (1)
14.73 290 glycoside (1)
16.23 caffeoyl-conjugate (1)
16.3 219 caffeoyl-conjugate (1)
16.8 432 glycoside (1)
17.95 97 caffeoyl-feruloyl-conjugate (1)
18.24 171 caffeoyl-conjugate (1)
18.41 219 phenolic (1)
18.44 171 caffeoyl-conjugate (1)
19.68 171 caffeoyl conjugate (1)
2,3-dihydroxybenzoic acid-3-O-glucoside (1)
2,5-dihydroxybenzoic acid-5-O-glucoside (1)
2-O-salicyloylsalicin (1)
2-hydroxyglutarate (m+0) (1)
2-hydroxyglutarate (m+1) (1)
2-hydroxyglutarate (m+2) (1)

IsPrivate

False (1)

First Public Date

2019 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (43)
Unknown experiment type (22)
RNA-seq of coding RNA (10)
Methylation profiling by array (6)
ChIP-chip by tiling array (4)
Comparative genomic hybridization by array (4)
Other (2)
Genotyping by array (1)
ChIP-seq (1)
RNA-seq of total RNA (1)

Release Date

2021 (79)
2022 (77)
2025 (73)
2020 (67)
2023 (62)
2016 (62)
2024 (52)
2019 (48)
2015 (44)
2018 (41)
2012 (38)
2017 (37)
2014 (37)
2010 (31)
2013 (27)
2011 (26)
2006 (18)
2005 (17)
2009 (14)
2026 (12)
2007 (6)
2008 (5)
2001 (4)
2002 (2)
2000 (2)
2004 (1)
2003 (1)

Lab affiliation

Bioplatforms Australia (7)
Leeds Institute of Medical Research (LIMR) St James's University Hospital Leeds LS9 7TF United Kingdom (2)
1. Garvan Institute of Medical Research, Cancer Ecosystems Program, and The Kinghorn Cancer Centre, Darlinghurst, Sydney, New South Wales, Australia. 2. School of Clinical Medicine, Faculty of Medicine and Health, University of New South Wales (UNSW), Kensington, Sydney, New South Wales, Australia. (1)
Assistant Professor at Department of Chemical and Pharmaceutical Sciences, University of Trieste, Italy (1)
Bioplatforms Australia (project manager) (1)
Department of Medicine, Faculty of Medicine, McGill University (1)
Department of Microbiology and Cell Biology, Montana State Univeristy (1)
Head of Proteomics (1)
Institute of Molecular Systems Biology & Department of Health Sciences and Technology, ETH Zurich, Switzerland (1)
Janne Lehtiö Science for Life Laboratory/Karolinska Institutet Cancer Proteomics Mass spectrometry Tomtebodavägen 23 17176 Solna Sweden (1)
Kids Neuroscience Centre (1)
Kids Neuroscience Centre, Kids Research, Sydney Children Hospital Network (1)
Kids Neuroscience Centre, The Children's Hospital at Westmead, Faculty of Medicine and Health, University of Sydney (1)
Leeds Institute of Medical Research (LIMR) St James's University Hospital Leeds LS9 7TF (1)
School of Life and Environmental Sciences, Faculty of Science, The University of Sydney, Sydney, NSW, Australia (1)
University of Leeds (1)

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Luminal-like and basal-like in vivo breast cancer xenograft models

Not available

ORGANISM(S): Homo sapiens

S-ECPF-GEOD-23041 | biostudies-other

H-Prune through GSK-3β interaction sustains canonical WNT/β-catenin signaling enhancing cancer progression in NSCLC.

Not available

S-EPMC4170634 | biostudies-literature

Transcription profiling of human U2OS-ERalpha cells induced with doxycycline reveals selective estrogen receptor-beta agonists repress transcription of proinflammatory genes

In addition to their role in the development and function of the reproductive system, estrogens have significant anti-inflammatory properties. Although both estrogen receptors (ERs) can mediate anti-inflammatory actions, ERbeta is a more desirable therapeutic target because ERalpha mediates the prol...

ORGANISM(S): Homo sapiens

2008-06-11 | E-GEOD-11115 | biostudies-arrayexpress

The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?

Not available

S-EPMC6370091 | biostudies-literature

Messenger RNA is a functional component of a chromatin insulator complex

Chromatin insulators are DNA-protein complexes situated throughout the genome capable of demarcating independent transcriptional domains. Previous studies point to an important role for RNA in gypsy chromatin insulator function in Drosophila; however, the identity of these putative insulator-associa...

ORGANISM(S): Drosophila melanogaster

2013-08-06 | E-GEOD-29991 | biostudies-arrayexpress

Roles of aconitase in growth, metabolism, and morphological differentiation of Streptomyces coelicolor.

Not available

S-EPMC95221 | biostudies-literature

Spa contributes to the virulence of type 18 group A streptococci.

Not available

S-EPMC98246 | biostudies-literature

Darwinian Dynamics of Intratumoral Heterogeneity: Not Solely Random Mutations but Also Variable Environmental Selection Forces.

Not available

S-EPMC5384728 | biostudies-literature

RNA-seq of Mycobacterium tuberculosis H37Rv treated with alpibectir or a combination of alpibectir and ethionamide against untreated controls

Alpibectir potentiates the activity of ethionamide and prothionamide, which are second-line antibiotics used for tuberculosis treatment. Both are prodrugs whose antibacterial activity depends on bioactivation by oxidases, including the Baeyer-Villiger monooxygenase MymA. Alpibectir binds the transcr...

ORGANISM(S): Mycobacterium tuberculosis

2025-12-10 | E-MTAB-16253 | biostudies-arrayexpress

Knowledge about child birth and postpartum obstetric danger signs and associated factors among mothers in Dale district, Southern Ethiopia.

Not available

S-EPMC7268669 | biostudies-literature

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