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TranscriptomicsTranscription profiling of zebrafish embryos injected with a morpholino targeting LIN9
TÜAB zebrafish were maintained at 28.5 °C in in 1x Danieau solution (58 mM NaCl, 0.7 mM KCl, 0.4 mM MgSO4, 0.6 mM Ca (NO3)2, 5 mM HEPES, pH 7.6, 0.0001 % Methylene blue). Morpholinos (Gene Tools, Philomath, OR) were designed against Danio rerio lin-9 homolog (Genebank accession NM_001044946). The mo...
ORGANISM(S): Danio rerio 
2009-03-28 | E-MEXP-2100 | biostudies-arrayexpress
MetabolomicsMetabolome-based prediction of yield heterosis contributes to the breeding of elite rice
The improvement of breeding efficiencies for heterotic and climate-resilient crops can mitigate the food shortage crisis from overpopulation and climate change. Thus far, diverse molecular markers have been utilized for guiding field phenotypic selections, while the accurate predictions of complex h...
2019-12-10 | MTBLS742 | MetaboLights
UnknownTop-down cortical interactions in visuospatial attention.
Not available
S-EPMC5607080 | biostudies-literature
TranscriptomicsTranscription profiling of mouse RARgamma responsive genes in F9 teratocarcinoma cells
We compared the differentially expressed genes between the F9 Wt cells and F9 RAR gamma knock out cells before and after RA treatment. 3 replicates for each conditions. We also identified the RA responsive genes in the F9 Wt cells. Experiment Overall Design: F9 wt cells and F9 RAR gamma knock out ce...
ORGANISM(S): Mus musculus 
2008-06-16 | E-GEOD-8431 | biostudies-arrayexpress
TranscriptomicsFunctional analysis of transcriptome dynamics during growth in Angus cattle longissimus muscle
The bovine transcriptome dynamics in logissimus muscle (LM) during the post-natal growth remain unknown. Biopsies of LM from Angus steers were harvested at 0, 60, 120, and 220 d from early-weaning. A 13,153 bovine oligonucleotide array was used for transcript profiling. Functional analysis of microa...
ORGANISM(S): Bos taurus 
2013-06-21 | E-GEOD-48136 | biostudies-arrayexpress
TranscriptomicsMyeloid lineage switch in pro-B cells generates novel macrophage subsets during homeostasis and inflammation
Here we demonstrate for the first time evidence of lineage switch from B-1 B lymphocyte to a macrophage , or so-called transdifferentiation, occurring in mature cells in vivo. Specifically, using transgenic B6.Mb1-iCre/Rosa26-YFP mice, in which YFP expression is restricted exclusively to B cell line...
ORGANISM(S): Mus musculus 
2018-09-01 | E-MTAB-1878 | biostudies-arrayexpress
TranscriptomicsLignocellulose-induced regulation of Phanaerochaete chrysosporium genes
Transcript profiles of Phanerochaete chrysosporium grown on ball-milled aspen or ball-milled pine were analyzed. Array design based on the DoE's Joint Genome Institute's v2.1 annotation. Goal is to define genes involved in lignocellulose degradation. From a data set of 10,004 unique alleles, each Ro...
ORGANISM(S): Phanerochaete chrysosporium 
2011-06-02 | E-GEOD-27941 | biostudies-arrayexpress
MetabolomicsLongitudinal multi-omics reveals subset-specific mechanisms underlying irritable bowel syndrome

The gut microbiome has been implicated in multiple human chronic gastrointestinal (GI) disorders. Determining its mechanistic role in disease has been difficult due to apparent disconnects between animal and human studies and lack of an integrated multi-omics view of disease-specific physiologica...

2020-09-08 | MTBLS1396 | MetaboLights
UnknownChronic Infection Depletes Hematopoietic Stem Cells through Stress-Induced Terminal Differentiation.
Not available
S-EPMC5161248 | biostudies-literature
TranscriptomicsNutrient limitation-induced regulation of Phanaerochaete chrysosporium genes
Transcript profiles of Phanerochaete chrysosporium grown on carbon-limited medium, nitrogen-limited medium and replete medium. Array design based on the DoE's Joint Genome Institute's v2.1 annotation. Goal is to define genes involved in lignin degradation. Keywords: gene expression under three diff...
ORGANISM(S): Phanerochaete chrysosporium 
2009-03-30 | E-GEOD-14735 | biostudies-arrayexpress
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