Dataset brief - OmicsDI

Show results for

Unknown (4063)
Proteomics (379)
Transcriptomics (105)
Genomics (58)
Metabolomics (40)
Clinical (3)
Other (1)

Organisms

Allexis (362)
Arabidopsis thaliana (362)
Bos taurus (362)
Callinectes sapidus (362)
Drosophila melanogaster (362)
Entamoeba histolytica HM-1:IMSS-A (362)
Escherichia coli (362)
Homo sapiens (67)
Mus musculus (27)
Arabidopsis thaliana (6)
Rattus norvegicus (5)
Oncorhynchus nerka (2)
Zea mays (2)
Ovis aries (2)
Saccharomyces cerevisiae (2)
Candida albicans (2)
Sus scrofa (2)
unidentified (2)
Pseudo-nitzschia multiseries (1)
Phalaenopsis aphrodite subsp. formosana (1)
Strongylocentrotus purpuratus (1)
Zea mays subsp. mays (1)
Spodoptera frugiperda (1)
Schizosaccharomyces pombe (1)
Bos taurus (1)
Glycine max (1)
Caenorhabditis elegans (1)
Danio rerio (1)
Drosophila melanogaster (1)
Glycocystis (1)

Organisms

Mus musculus (7)
Homo sapiens (6)
Phanerodontia chrysosporium (3)
Rhodonia placenta (2)
Triticum aestivum (1)
Drosophila melanogaster (1)
seawater metagenome (1)
Staphylococcus aureus (1)
Danio rerio (1)
Rattus norvegicus (1)

Repository

pride (362)
biostudies-arrayexpress (113)
ENA (31)
MetaboLights (23)
EGA (18)
GNPS (17)
MassIVE (16)
geo (3)
iProX (1)

Tissue

Cell culture (95)
Brain (23)
Epithelial cell (22)
Liver (17)
Blood plasma (14)
Blood serum (11)
Plant cell (11)
Kidney (8)
Lung (8)
Permanent cell line cell (8)
Hepatocyte (7)
Heart (6)
Leaf (6)
T cell (6)
Whole body (6)
Seed (5)
Stem cell (5)
Colon (4)
Embryonic stem cell (4)
Microglial cell (4)
Pancreas (4)
Rosette (4)
Skin (4)
Astrocyte (3)
Blood (3)
Cell suspension culture (3)
Cerebrospinal fluid (3)
HeLa cell (3)
Macrophage (3)
Melanocyte (3)

Disease

Disease free (19)
Breast cancer (9)
Colon cancer (6)
Colorectal Neoplasms (3)
COVID-19 (3)
Crohn's disease (3)
Malignant neoplasm of ovary (3)
Melanoma (3)
Alzheimer's disease (2)
Amyotrophic lateral sclerosis (2)
Brain cancer (2)
Cardiovascular system disease (2)
Lung cancer (2)
Non-small cell lung carcinoma (2)
Norovirus gastroenteritis (2)
Pancreatic ductal adenocarcinoma (2)
Burn injury (1)
Ulcerative colitis (1)
Chronic myelogenous leukemia (1)
Psoroptes ovis infestation (1)
Acute T cell leukemia (1)
Acute leukemia (1)
Aortic valve stenosis (1)
Autism spectrum disorder (1)
Bone remodeling disease (1)
Brain glioblastoma multiforme (1)
Celiac disease (1)
Cervix carcinoma (1)
Cirrhosis (1)
Desmoplastic small round cell tumor (1)

Technology Type

Mass Spectrometry (362)
Shotgun proteomics (214)
Bottom-up proteomics (66)
Data-dependent acquisition (46)
Affinity purification coupled with mass spectrometry proteomics (28)
SWATH MS (23)
Mass spectrometry (18)
Data-independent acquisition (17)
Gel-based experiment (13)
Top-down proteomics (10)
HDMSE (7)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Mass spectrometry assay (4)
DiaPASEF (3)
SRM/MRM (3)
NMR spectroscopy (2)
Affinity proteomics (2)
Immunopeptidomics (2)
MSE (2)
COMPLETE_GENOMICS, Complete Genomics (1)
All-ion fragmentation (1)
Metaproteomics (1)
Olink affinity proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (7)
Illumina NovaSeq 6000 (5)
Q Exactive (5)
Vion IMS QTof (4)
NextSeq 2000 (3)
NextSeq 500 (3)
NextSeq 550 (2)
Illumina HiSeq 3000 (2)
Illumina HiSeq 4000 (2)
Impact (2)
Impact HD (2)
LTQ Orbitrap Elite (2)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
Illumina Nextera XT index kits (Set A–D) (1)
Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
Aria III (BD Biosciences) (1)
10X Genomics Chromium v3.1 with multiplexing kit (1)
Agilent high resolution C scanner (1)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq X (1)
Illumina HiSeq 1000 (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
ACQUITY UPLC I-Class (1)
LTQ (1)
LTQ FT (1)
LTQ Orbitrap XL (1)
MicrOTOF-Q II (1)
Orbitrap ID-X (1)
Q Exactive Focus Orbitrap (1)

Publication Date

2021 (67)
2025 (63)
2026 (53)
2022 (50)
2024 (40)
2023 (35)
2019 (33)
2020 (30)
2015 (26)
2016 (21)
2018 (20)
2017 (17)
2014 (15)
2013 (14)
2012 (10)
2011 (10)
2010 (10)
2009 (7)
2008 (5)
2007 (4)
2004 (2)

CHEBI ID

CHEBI:28044 (5)
CHEBI:26271 (4)
CHEBI:16704 (4)
CHEBI:27897 (4)
CHEBI:17822 (3)
CHEBI:25094 (3)
CHEBI:18237 (3)
CHEBI:22660 (3)
CHEBI:27570 (3)
CHEBI:18186 (3)
CHEBI:18257 (3)
CHEBI:17802 (3)
CHEBI:25017 (3)
CHEBI:17929 (3)
CHEBI:27266 (3)
CHEBI:7916 (3)
CHEBI:16449 (3)
CHEBI:16919 (3)
CHEBI:27732 (3)
CHEBI:17368 (3)
CHEBI:30769 (3)
CHEBI:26948 (2)
CHEBI:18021 (2)
CHEBI:40521 (2)
CHEBI:70959 (2)
CHEBI:73025 (2)
CHEBI:15584 (2)
CHEBI:18132 (2)
CHEBI:4170 (2)
CHEBI:16040 (2)

Metabolite Name

Creatine (4)
Histidine (3)
Leucine (3)
Phenylalanine (3)
Uridine (3)
Phosphoethanolamine (2)
Aspartic acid (2)
Anserine (2)
Glutamate (2)
Aspartate (2)
Glycine (2)
Serine (2)
Proline (2)
Lysine (2)
Phenylalanine (2)
Ornithine (2)
Alanine (2)
Valine (2)
Citric acid (2)
Valine (2)
Betaine (2)
Thiamine (2)
Citrulline (2)
Ornithine (2)
Acetylcholine (2)
Choline (2)
Myo-Inositol (2)
Cytosine (2)
Alanine (2)
Proline (2)

First Public Date

2014 (6)
2025 (5)
2020 (4)
2023 (3)
2021 (3)
2018 (3)
2026 (2)
2024 (2)
2022 (2)
2019 (1)

Classification

bacteria (1)

Modification

Not available (2)

Study status

Active, not recruiting (2)
Recruiting (1)

Study type

Transcription profiling by array (55)
RNA-seq of coding RNA (12)
RNA-seq of coding RNA from single cells (10)
ChIP-seq (8)
ChIP-chip by tiling array (4)
Unknown experiment type (3)
Interventional (3)
Genotyping by array (2)
MicroRNA profiling by high throughput sequencing (2)
Comparative genomic hybridization by array (2)
MicroRNA profiling by array (2)
Plant - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
MBD-seq (1)
RIP-seq (1)
Other (1)
Single nucleus RNA sequencing (1)
DNA-seq (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2020 (704)
2022 (628)
2023 (612)
2021 (494)
2024 (370)
2019 (356)
2018 (346)
2016 (207)
2017 (154)
2025 (134)
2015 (52)
2026 (40)
2014 (15)
2013 (15)
2012 (11)
2011 (10)
2010 (10)
2009 (8)
2008 (5)
2007 (4)
2004 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (25)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (10)
Professor of Genomic Evolution, School of Medicine, Conway Institute of Biomolecular and Biomedical Research, University College Dublin Belfield Dublin 4 (7)
Bioanalytical Mass Spectrometry Research Group, Chemistry Department, Universite du Quebec a Montreal (UQAM), Montreal (Quebec), Canada (5)
North Carolina State University (5)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (3)
IMol Institute, Polish Academy of Sciences, Warsaw, Poland (3)
Institute of Neuronal Cell Biology Technical University of Munich Germany (3)
Medizinisches Proteom-Center, Medical Faculty, Ruhr-University Bochum, Bochum, Germany (3)
Molecular Genetics, RPTU Kaiserslautern (3)
Molecular Oncology Chemical Biology and Molecular Medicine Moffitt Cancer Center (3)
Professor at Department of Pharmacy, Drug Delivery, Uppsala University (3)
Systems Biology Laboratory, Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (3)
Biozentrum, University of Basel, 4056 Basel, Switzerland (2)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (2)
Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research (UFZ), Leipzig, Germany (2)
Division of Clinical Protein Science & Imaging, Department of Clinical Sciences (Lund), Department of Biomedical Engineering, Lund University, Lund, Sweden (2)
Division of Virology, Department of Pathology, University of Cambridge, UK (2)
Harvard Medical School Dept. of Cell Biology Boston, MA USA (2)
Head of Laboratory of Neuro-Oncology, Neurology, Clinical & Cancer Proteomics (2)
IBMC (2)
Institute of Biology Leiden, Leiden University (2)
LMU Munich Plant Biochemistry and Physiology, Germany (2)
MRC Toxicology Unit, University of Cambridge (2)
Medical University of Vienna (2)
Molecular Genetics, RPTU Kaiserslautern, Germany (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
Ruhr University Bochum, Medical Faculty, Medizinisches Proteom-Center (2)
School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland (2)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences (2)

Location

United States (2)
United Kingdom (1)

Keyword

Early Detection of Cancer (1)
Cancer Screening (1)
Community Health Centers (1)
Implementation Science (1)
Patient Navigation (1)
Colonoscopy (1)

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Reanalysis of the blood plasma and serum samples from healthy donors

Previously, we published a dataset of human blood plasma and serum samples of 10 healthy males and 10 healthy females, fractionated on a set of sorbents (cation exchange Toyopearl CM-650M, CM Bio-Gel A, SP Sephadex C-25 and anion exchange QAE Sephadex A-25) and analyzed by LC-MS/MS individually and ...

ORGANISM(S): Homo sapiens (Human)

2024-06-14 | PXD027587 | Pride

A dataset of labelled objects on raw video sequences.

Not available

S-EPMC7797526 | biostudies-literature

Post-harvested Musa acuminata Banana Tiers Dataset.

Not available

S-EPMC9823153 | biostudies-literature

ROSIDS23: Network intrusion detection dataset for robot operating system.

Not available

S-EPMC10654526 | biostudies-literature

Dataset on bitcoin carbon footprint and energy consumption.

Not available

S-EPMC9119828 | biostudies-literature

Mass spectrometry analysis of the blood plasma and serum samples from healthy donors

ORGANISM(S): Homo sapiens (Human)

2024-06-14 | PXD027552 | Pride

Peptidomics Mass spectrometry Blood plasma and serum Healthy donors

Regulatory performance dataset constructed from U.S. soil jurisdictions based on the top 100 concerned pollutants.

Not available

S-EPMC6186953 | biostudies-literature

TCR sequencing of peripheral blood mononuclear cells (PBMC) and prostate biopsies from prostate cancer patients undergoing cryoimmunotherapy

This dataset includes a total of 18 prostate cancer patients undergoing cryoimmunotherapy (cryoIT). The clinical trial is registered at ClinicalTrials.gov under the identifier NCT02423928. PBMC specimens obtained before and after cryoIT and prostate biopsies at the time of cryoablation are included ...

ORGANISM(S): Homo sapiens

2022-10-30 | E-MTAB-10998 | biostudies-arrayexpress

Dataset of non-crimp fabric reinforced composites for an X-ray computer tomography aided engineering process.

Not available

S-EPMC7689367 | biostudies-literature

Brief Dataset on produced handsheet from oil palm residue lignocellulose treated with Bacillus cereus on mechanical and physical characterization.

Not available

S-EPMC8122147 | biostudies-literature

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4650 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

First Public Date

Classification

Modification

Study status

Study type

Release Date

Lab affiliation

Location

Tags

Keyword

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