OmicsDI
Toggle navigation
Browse
Submit Data
Databases
API
Help
Advanced
Search
12352
Results
Show all
Save search
Copy query
Show results for
Unknown
(11801)
Transcriptomics
(254)
Proteomics
(148)
Genomics
(122)
Metabolomics
(24)
Models
(1)
Genomic
(1)
Other
(1)
Organisms
Homo sapiens
(161)
Mus musculus
(41)
Drosophila melanogaster
(40)
Saccharomyces cerevisiae
(13)
Arabidopsis thaliana
(10)
Glycine max
(9)
Drosophila simulans
(6)
Drosophila yakuba
(5)
Drosophila pseudoobscura
(4)
Rattus norvegicus
(4)
Euphorbia esula
(3)
Vitis vinifera
(3)
Canis lupus familiaris
(3)
Hypomesus transpacificus
(2)
Triticum turgidum subsp. durum
(2)
Sordaria macrospora
(2)
Macaca mulatta
(2)
Oryza sativa
(2)
Geobacter sulfurreducens
(2)
Mycobacterium tuberculosis
(2)
Solanum lycopersicum
(2)
Caenorhabditis elegans
(2)
Sus scrofa
(2)
Menidia beryllina
(1)
Fusarium verticillioides
(1)
Canis lupus
(1)
Ascaris suum
(1)
Staphylococcus aureus subsp. aureus NCTC 8325
(1)
Citrullus lanatus
(1)
Pimephales promelas
(1)
Organisms
Homo sapiens
(8)
Mus musculus
(4)
Hypomesus transpacificus
(2)
Schizosaccharomyces pombe
(2)
Pseudocercospora musae
(1)
Populus x canadensis
(1)
Escherichia coli str. K-12 substr. MG1655
(1)
Drosophila melanogaster
(1)
Equus caballus
(1)
Escherichia coli
(1)
Arabidopsis thaliana
(1)
synthetic construct
(1)
Repository
biostudies-arrayexpress
(307)
pride
(113)
EGA
(38)
ENA
(31)
MassIVE
(30)
MetaboLights
(16)
MetabolomicsWorkbench
(7)
PanoramaPublic
(5)
BioModels
(1)
dbGaP
(1)
GNPS
(1)
jPOST
(1)
Tissue
Cell culture
(15)
Brain
(10)
Epithelial cell
(8)
Heart
(6)
Skin
(4)
Blood plasma
(4)
Lung
(4)
Kidney
(4)
B cell
(4)
Liver
(4)
Cell suspension culture
(3)
Permanent cell line cell
(3)
Blood cell
(3)
Liver
(2)
Blood
(2)
Choroidal melanocyte
(2)
Pancreatic islet
(2)
Plant cell
(2)
Testis
(2)
Spleen
(2)
Leaf
(2)
T cell
(2)
Intestine
(1)
Lung
(1)
Jejunum
(1)
Urine
(1)
Corneocyte
(1)
T-lymphoblast
(1)
Airway epithelium
(1)
Nasal epithelium
(1)
Disease
Atypical teratoid rhabdoid tumor
(3)
Cardiovascular system disease
(3)
COVID-19
(3)
Breast cancer
(3)
Acute leukemia
(3)
Uveal melanoma
(2)
Amyotrophic lateral sclerosis
(2)
Disease free
(2)
Burn/trauma
(1)
Mitochondrial disease
(1)
Melanoma
(1)
Asthma
(1)
Oxidative stress
(1)
Interstitial cystitis
(1)
Fatty liver disease
(1)
Ichthyosis
(1)
Tinea unguium
(1)
Follicular lymphoma
(1)
Keratitis
(1)
Fascioliasis
(1)
Colorectal carcinoma
(1)
Breast adenocarcinoma
(1)
Ciliopathy
(1)
Glaucoma
(1)
Diabetes mellitus
(1)
Mutational_hotspot
(1)
Frontotemporal dementia and/or amyotrophic lateral sclerosis-3
(1)
Pneumonia
(1)
FTDALS1
(1)
Mantle cell lymphoma
(1)
Technology Type
Mass Spectrometry
(120)
Shotgun proteomics
(60)
Affinity purification coupled with mass spectrometry proteomics
(27)
Bottom-up proteomics
(22)
Mass spectrometry
(13)
Data-independent acquisition
(9)
Data-dependent acquisition
(9)
Illumina 15K
(8)
ESI
(6)
Mass spectrometry assay
(3)
Chemical cross-linking coupled with mass spectrometry proteomics
(3)
Illumina HiSeq 2500, ILLUMINA
(2)
EI
(2)
SWATH MS
(2)
Gel-based experiment
(2)
Illumina HiSeq 3000
(1)
SomaScan affinity proteomics
(1)
Mass spectrometry imaging
(1)
DiaPASEF
(1)
Top-down proteomics
(1)
Instrument Platform
Q Exactive
(12)
Illumina NovaSeq 6000
(7)
Liquid Chromatography MS - positive - reverse phase
(7)
NextSeq 500
(4)
Orbitrap Fusion
(4)
Q Exactive Plus
(3)
Orbitrap Fusion Lumos
(3)
Illumina HiSeq 2000
(2)
LTQ Orbitrap Velos
(2)
454 GS
(1)
Illumina Genome Analyzer IIx
(1)
418 [Affymetrix]
(1)
Illumina NovaSeq X
(1)
ACCRE
(1)
Illumina HiSeq 2500
(1)
Illumina HiSeq 3000
(1)
Thermo Q Exactive Plus Orbitrap
(1)
ImpactHD (Bruker Daltonics)
(1)
6520A Quadrupole Time-of-Flight LC/MS
(1)
Orbitrap Fusion ETD
(1)
Impact
(1)
Impact HD
(1)
LTQ Orbitrap Elite
(1)
TripleTOF 5600+
(1)
LTQ
(1)
TripleTOF 6600
(1)
TimsTOF
(1)
6520B Q-TOF LC/MS
(1)
Orbitrap Exploris 480
(1)
Q Exactive HF-X
(1)
Publication Date
2010
(67)
2011
(42)
2013
(33)
2012
(32)
2025
(29)
2015
(29)
2014
(29)
2024
(23)
2016
(21)
2026
(20)
2021
(20)
2022
(19)
2019
(18)
2023
(15)
2008
(15)
2009
(12)
2020
(12)
2017
(9)
2007
(9)
2018
(6)
2005
(5)
2006
(3)
2004
(2)
2003
(1)
2002
(1)
CHEBI ID
CHEBI:16919
(8)
CHEBI:15354
(8)
CHEBI:17768
(7)
CHEBI:17750
(7)
CHEBI:15891
(7)
CHEBI:16737
(7)
CHEBI:17596
(7)
CHEBI:17775
(7)
CHEBI:17368
(7)
CHEBI:30769
(7)
CHEBI:28747
(6)
CHEBI:16344
(6)
CHEBI:16040
(6)
CHEBI:16742
(6)
CHEBI:17562
(6)
CHEBI:10072
(6)
CHEBI:28790
(6)
CHEBI:17154
(6)
CHEBI:16566
(6)
CHEBI:15727
(6)
CHEBI:16393
(6)
CHEBI:24813
(6)
CHEBI:16704
(6)
CHEBI:15724
(6)
CHEBI:28478
(6)
CHEBI:70979
(5)
CHEBI:28733
(5)
CHEBI:70959
(5)
CHEBI:70958
(5)
CHEBI:15901
(5)
Metabolite Name
Xylose
(5)
Phosphate
(4)
N-acetylcarnosine
(4)
Methionine sulfoxide
(4)
Uridine
(4)
Tryptophan
(4)
Serine
(4)
Proline
(4)
Lysine
(4)
Inosine
(4)
Carnitine
(4)
Asparagine
(4)
Adenine
(4)
Phenylalanine
(4)
Tyrosine
(4)
Fructose
(4)
Mannose
(4)
Threonine
(4)
Methionine
(4)
Glucose
(4)
Glutamine
(4)
Ornithine
(4)
Alanine
(4)
Valine
(4)
Adenosine
(4)
Isoleucine
(4)
Leucine
(4)
Uracil
(4)
Glycine
(4)
Spermidine
(4)
IsPrivate
False
(1)
First Public Date
2014
(6)
2020
(5)
2023
(4)
2021
(4)
2018
(4)
2022
(2)
2019
(2)
2016
(2)
2025
(1)
2013
(1)
Classification
bacteria
(2)
Modelling Approach
Ordinary differential equation model
(1)
Modification
42.010565
(1)
15.994915
(1)
57.021464
(1)
Not available
(1)
Study type
Transcription profiling by array
(144)
ChIP-seq
(53)
RNA-seq of coding RNA
(42)
Comparative genomic hybridization by array
(15)
Unknown experiment type
(10)
Other
(9)
RNA-seq of non coding RNA
(7)
Transcription profiling by tiling array
(6)
ChIP-chip by tiling array
(5)
Genotyping by array
(3)
RNA-seq of coding RNA from single cells
(3)
RNAi profiling by array
(2)
ChIP-chip by array
(2)
RNA-seq of total RNA
(2)
Animal - High-throughput sequencing
(1)
ATAC-seq
(1)
ScATAC-seq
(1)
Genotyping by high throughput sequencing
(1)
Release Date
2022
(1257)
2021
(1172)
2023
(1110)
2025
(1106)
2024
(1027)
2020
(928)
2019
(813)
2018
(730)
2015
(579)
2016
(547)
2017
(529)
2014
(471)
2013
(334)
2012
(295)
2011
(274)
2010
(238)
2009
(168)
2026
(142)
2008
(133)
2007
(77)
2006
(59)
2005
(43)
2004
(20)
2003
(11)
2002
(11)
2001
(9)
2000
(8)
1999
(8)
1997
(5)
1998
(2)
Lab affiliation
Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX
(6)
Memorial Sloan Kettering Cancer Center
(3)
Indiana University School of Medicine
(3)
Department of Chemical & Systems Biology, Stanford University, USA
(2)
Segal Cancer Proteomics Centre,Lady Davis Institute, Jewish General Hospital
(2)
Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Roosevelt Drive, Oxford OX3 7FZ, UK
(2)
University of Missouri-Columbia
(2)
Discovery Proteomics Facility, University of Oxford
(2)
Discovery Proteomics Laboratory, University of Oxford, UK
(2)
Department of Chemical & Systems Biology Stanford University USA
(2)
Head of Discovery Proteomics Facility, Oxford
(1)
Nantes Université, CNRS, INSERM, l’institut du thorax, 44000 Nantes, France
(1)
Harvard Medical School Department of Neurobiology
(1)
1Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Roosevelt Drive, Oxford, OX3 7FZ, UK
(1)
Discovery Proteomics Facility, Target Discovery Institute, University of Oxford
(1)
Department of Biochemistry, University of Oxford, UK
(1)
Discovery Proteomics Facility, Target Discovery Institute,University of Oxford
(1)
University of California Davis, College of Agricultural and Envirnmental Sciences, Environmental Toxicology
(1)
Target Discovery Institute Nuffield Department of Medicine University of Oxford Roosevelt Drive Oxford OX3 7FZ UK Tel: +44 (0) 1865 612 921 Email: benedikt.kessler@ndm.ox.ac.uk Website: www.tdi.ox.ac.uk/mass-spectrometry
(1)
Stanford University School of Medicine 279 Campus Drive Stanford, CA 94305-5323
(1)
TDI/CMD nuffield department of medicine, University of Oxford
(1)
Protein Phosphorylation Laboratory, The Francis Crick Institute
(1)
Discovery Proteomics Lab, University of Oxford
(1)
NDM Research Building | Old Road Campus | Oxford OX3 7FZ
(1)
Lady Davis Institute for Medical Research - Jewish General Hospital - McGill University
(1)
Veterinary Parasitology Group, Institute of Biological Environmental and Rural Sciences (IBERS), Aberystwyth University, Penglais, Aberystwyth, Ceredigion, SY23 3FL
(1)
University of California, San Diego Proteomics Mass Spectrometry Depertment
(1)
Department of Plant Pathology, University of California, Davis
(1)
1 The Rosalind Franklin Institute, Oxfordshire, United Kingdom 2 Department of Pharmacology, University of Oxford
(1)
Department of Physiology & Membrane Biology, University of California Davis School of Medicine
(1)
Tags
pathogen
(2)
pathogen:bacterium
(2)
xref:PubMed:32747416
(1)
xref:PubMed:39198865
(1)
xref:PubMed:36974904
(1)
xref:PubMed:39688548
(1)
xref:PubMed:32545722
(1)
xref:PubMed:32686621
(1)
xref:PubMed:31053798
(1)
xref:PubMed:27373332
(1)
xref:PubMed:35874727
(1)
xref:PubMed:34330913
(1)
xref:PubMed:31066439
(1)
xref:PubMed:24475130
(1)
xref:PubMed:36542058
(1)
xref:PubMed:18721163
(1)
xref:PubMed:24957674
(1)
xref:PubMed:35100392
(1)
xref:PubMed:23868195
(1)
xref:PubMed:19767843
(1)
xref:PubMed:33411340
(1)
xref:PubMed:24061060
(1)
xref:PubMed:40966285
(1)
Previous
page
1 / 1236
You're on page
1
page
2
page
3
page
4
page
5
page
...
page
1236
Next
page
Sort
by:
Relevance
Page size
10
High-Throughput Single-Molecule R-loop Footprinting Reveals Principles of R-loop Formation
High-Throughput Single-Molecule R-loop Footprinting Reveals Principles of R-loop Formation
PRJNA541182
|
ENA
Cite
VST-DAVis: an R Shiny application and web-browser for spatial transcriptomics data analysis and visualization.
Not available
S-EPMC12866912
|
biostudies-literature
Cite
The extruded non-template strand determines the architecture of R-loops
The extruded non-template strand determines the architecture of R-loops
PRJNA533230
|
ENA
Cite
Best practices for the visualization, mapping, and manipulation of R-loops
Best practices for the visualization, mapping, and manipulation of R-loops
PRJNA665386
|
ENA
Cite
Splicing Inhibition Reveals Novel Roles for SF3B1 in Transcription Dynamics and R-Loop Metabolism
Splicing Inhibition Reveals Novel Roles for SF3B1 in Transcription Dynamics and R-Loop Metabolism
PRJNA625691
|
ENA
Cite
Quantitation of [5-14CH3]-(2R, 4'R, 8'R)-α-tocopherol in humans.
Not available
S-EPMC3138640
|
biostudies-literature
Cite
Ultra-deep Coverage Single-molecule R-loop Footprinting Reveals Principles of R-loop Formation.
Not available
S-EPMC7669280
|
biostudies-literature
Cite
Protein-mediated stabilization and nicking of the nontemplate DNA strand dramatically affect R-loop formation in vitro
Protein-mediated stabilization and nicking of the nontemplate DNA strand dramatically affect R-loop formation in vitro
PRJNA1252462
|
ENA
Cite
Quality-controlled R-loop meta-analysis reveals the characteristics of R-loop consensus regions.
Not available
S-EPMC9303298
|
biostudies-literature
Cite
Interplay between DNA sequence and negative superhelicity drives R-loop structures.
Not available
S-EPMC6442632
|
biostudies-literature
Cite
Previous
page
1 / 1236
You're on page
1
page
2
page
3
page
4
page
5
page
...
page
1236
Next
page
Sort
by:
Relevance
Page size
10
OmicsDI
is part of the ELIXIR infrastructure
OmicsDI is an Elixir interoperability service.
Learn more ›
Tweets
