De Wei W - OmicsDI

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Unknown (851)
Transcriptomics (225)
Genomics (84)
Proteomics (37)
Metabolomics (17)
Multiomics (1)

Organisms

Homo sapiens (114)
Mus musculus (72)
Caenorhabditis elegans (27)
Streptomyces coelicolor (17)
Arabidopsis thaliana (9)
Rattus norvegicus (7)
Saccharomyces cerevisiae (6)
Tetrahymena thermophila (5)
Glycine max (5)
Drosophila melanogaster (5)
Triticum aestivum (4)
Moraxella catarrhalis (3)
Cryptococcus neoformans (3)
Bacillus subtilis subsp. subtilis str. 168 (2)
Brassica napus (2)
Yersinia pestis (2)
Schizosaccharomyces pombe (2)
Oryza sativa (2)
Staphylococcus aureus (2)
Oryctolagus cuniculus (2)
Solanum lycopersicum (2)
Ovis aries (2)
Oryza sativa Japonica Group (2)
Danio rerio (2)
Mycobacterium avium subsp. paratuberculosis K-10 (1)
Nannochloropsis oceanica (1)
Agrobacterium sp. 31749 (1)
Tomato yellow leaf curl China virus (1)
Tuber melanosporum (1)
Urocitellus parryii (1)

Repository

biostudies-arrayexpress (291)
pride (20)
EGA (18)
MetaboLights (17)
MassIVE (8)
iProX (3)
jPOST (2)
PAXDB (2)
PanoramaPublic (1)
PeptideAtlas (1)

Tissue

Cell culture (7)
Blood plasma (2)
Epithelial cell (2)
Stem cell (2)
Brain (1)
Hepatocyte (1)
JURKAT cell (1)
Liver (1)
Macrophage (1)
Plant cell (1)
T cell (1)
T-lymphocyte cell line (1)
Whole body (1)

Disease

Normal (2)
Adenocaricinoma (1)
SS2-infected (1)
Psoriasis (1)
Papillary thyroid carcinoma (1)
Buruli ulcer disease (1)
Disease free (1)

Technology Type

Mass Spectrometry (20)
Mass spectrometry (14)
Shotgun proteomics (12)
NMR spectroscopy (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Bottom-up proteomics (2)
Data-dependent acquisition (2)
Data-independent acquisition (2)
Gel-based experiment (2)
Illumina HiSeq 2500, ILLUMINA (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (9)
Illumina HiSeq 2000 (7)
NextSeq 500 (5)
Q Exactive (4)
LTQ Orbitrap Elite (2)
Orbitrap Fusion (2)
Bruker (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - hilic (2)
Covaris E220evolution (1)
ScanArray 4000XL [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)
MinION (1)
Illumina HiSeq 2500 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
Capillary electrophoresis MS - negative (1)
Capillary electrophoresis MS - positive (1)
GC色Agilent 7890A, Agilent ,LECOChroma TOF PEGASUS HT, LECO (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating – hilic (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2012 (50)
2011 (48)
2010 (43)
2014 (40)
2013 (29)
2015 (22)
2016 (19)
2024 (16)
2021 (11)
2008 (10)
2009 (9)
2023 (7)
2020 (7)
2022 (6)
2018 (6)
2025 (5)
2007 (5)
2019 (4)
2026 (3)
2006 (2)
2005 (1)
2003 (1)
2017 (1)

UNIPROT ID/AC

1433B_SOYBN (2)
1433D_SOYBN (2)
6DCS_SOYBN (2)
A1YZE0_SOYBN (2)
A5I866_SOYBN (2)
A5JUQ4_SOYBN (2)
A5JVZ7_SOYBN (2)
A5Z2K3_SOYBN (2)
A7BIC9_SOYBN (2)
A7X657_SOYBN (2)
A7XZJ7_SOYBN (2)
A9CPA7_SOYBN (2)
A9QNE4_SOYBN (2)
ACCD_SOYBN (2)
ACT3_SOYBN (2)
AKR1_SOYBN (2)
AMYB_SOYBN (2)
AOX3_SOYBN (2)
ATPB_SOYBN (2)
ATPE_SOYBN (2)
ATPF_SOYBN (2)
B0M195_SOYBN (2)
B0M196_SOYBN (2)
B0M1A0_SOYBN (2)
B0M1A4_SOYBN (2)
B0M1A6_SOYBN (2)
B0M1A9_SOYBN (2)
B0M1B1_SOYBN (2)
B1ACD3_SOYBN (2)
B1ACD5_SOYBN (2)

CHEBI ID

CHEBI:17368 (8)
CHEBI:15354 (7)
CHEBI:15428 (7)
CHEBI:15741 (7)
CHEBI:16449 (7)
CHEBI:16919 (7)
CHEBI:17750 (7)
CHEBI:28834 (7)
CHEBI:30769 (7)
CHEBI:15891 (6)
CHEBI:16196 (6)
CHEBI:16359 (6)
CHEBI:16704 (6)
CHEBI:16708 (6)
CHEBI:16737 (6)
CHEBI:16755 (6)
CHEBI:16865 (6)
CHEBI:17151 (6)
CHEBI:17154 (6)
CHEBI:17568 (6)
CHEBI:17748 (6)
CHEBI:17822 (6)
CHEBI:26271 (6)
CHEBI:28865 (6)
CHEBI:32389 (6)
CHEBI:48430 (6)
CHEBI:7916 (6)
CHEBI:16010 (5)
CHEBI:16027 (5)
CHEBI:16135 (5)

Metabolite Name

Creatine (4)
Creatinine (4)
Hypoxanthine (4)
4-acetamidobutanoate (3)
Alanine (3)
Allantoin (3)
Asparagine (3)
Beta-alanine (3)
Carnitine (3)
Choline (3)
Gamma-CEHC (3)
Glycine (3)
Glycine (3)
Hypoxanthine (3)
L-Leucine (3)
L-Phenylalanine (3)
L-Proline (3)
Leucine (3)
Methionine (3)
N6-methyladenosine (3)
Oleic acid (3)
Proline (3)
Taurine (3)
Uracil (3)
1-Methylnicotinamide (2)
1-methyl-4-imidazoleacetate (2)
1-methylhistidine (2)
1-methylnicotinamide (2)
12,13-DiHOME (2)
12-Hydroxydodecanoic acid (2)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (150)
ChIP-seq (59)
RNA-seq of coding RNA (31)
RNA-seq of non coding RNA (10)
Comparative genomic hybridization by array (7)
Methylation profiling by high throughput sequencing (7)
ChIP-chip by tiling array (6)
Methylation profiling by array (5)
RNA-seq of coding RNA from single cells (5)
Transcription profiling by tiling array (3)
MicroRNA profiling by array (2)
MNase-seq (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
Genotyping by array (1)
Other (1)

Release Date

2025 (107)
2024 (101)
2023 (100)
2021 (95)
2022 (83)
2019 (66)
2020 (61)
2014 (60)
2012 (60)
2011 (60)
2013 (55)
2015 (51)
2010 (51)
2016 (50)
2018 (46)
2017 (32)
2026 (23)
2008 (15)
2009 (13)
2007 (6)
2005 (3)
2004 (2)
2006 (1)
2003 (1)

Lab affiliation

Tianjin Medical University General Hospital (2)
AG Biochemie der Pflanzen (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands; Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands; and Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore. (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 138648 Singapore, Singapore. Department of Pharmacy, National University of Singapore, 117543, Singapore, Singapore. (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands (1)
Centre for Membrane Interactions and Dynamics, Department of Biomedical Science, University of Sheffield, Sheffield (1)
College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, PKU-IDG/McGovern Institute for Brain Research, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Peking University, Beijing, Academy for Advanced Interdisciplinary Studies, PKU-Tsinghua Center for Life Science, Peking University, Beijing 100871, China (1)
Department of Applied Chemistry, Chaoyang University of Technology, 168 Jifong East Road, Wufong, Taichung 41349, Taiwan (1)
Department of Chemistry, The University of Hong Kong (1)
Department of Pharmaceutical Sciences, Utrecht University (1)
Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Bonn, Germany (1)
Institute of Molecular Biology (IMB), Mainz, Germany (1)
Jiangsu Academy of Agricultural Sciences (1)
MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systematic Biology, School of Life Sciences, Tsinghua University, Beijing, China.100084 (1)
SIAIS, ShanghaiTech University (1)
School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551. (1)
School of Chinese Integrative Medicine,Hebei Medical University,Shijiazhuang,China (1)
Unité d’Immunobiologie de l’Infection, Institut Pasteur, Paris, France (1)

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Global Mapping of Histone H3 K4 and K27 Trimethylation: Lineage Fate Determination of Differentiating CD4+ T Cells

Multipotential naïve CD4+ T cells differentiate into distinct lineages including Th1, Th2, Th17, and inducible T regulatory (iTreg) cells. The remarkable diversity of CD4+ T cells begs the question whether the observed changes reflect terminal differentiation with heritable epigenetic modifications ...

ORGANISM(S): Mus musculus

2009-01-21 | E-GEOD-14254 | biostudies-arrayexpress

Transcriptome Analysis Reveals Long Intergenic Non-Coding RNAs Contributed to Intramuscular Fat Content Differences between Yorkshire and Wei Pigs.

Not available

S-EPMC7084294 | biostudies-literature

De Novo Analysis of Wolfiporia cocos Transcriptome to Reveal the Differentially Expressed Carbohydrate-Active Enzymes (CAZymes) Genes During the Early Stage of Sclerotial Growth.

Not available

S-EPMC4738778 | biostudies-literature

Adipocytokines and E-cadherin in colorectal carcinomas

Expression of adipocytokines and glucocorticoid related genes are associated with down regulation of E-cadherin mRNA in colorectal carcinomas

ORGANISM(S): Homo sapiens

2012-03-30 | E-MTAB-833 | biostudies-arrayexpress

Aberrant chromatin acetylation in MLL-AF9 leukemia mediates the response to HDAC inhibition (microarray)

We investigated the response of acute myeloid cells (AML) expressing MLL-AF9 fusion gene to the pan-HDACi panobinostat (LBH589), and found that low conentrations of panobinostat lead to MLL-AF9 cell toxicity and rapid changes in gene expression. Human hematopoietic stem/progenitor cells (HSPC) expre...

ORGANISM(S): Homo sapiens

2015-03-01 | E-GEOD-54218 | biostudies-arrayexpress

De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar 'Tieguanyin' compared with cultivar 'Benshan'.

Not available

S-EPMC6446291 | biostudies-literature

Transcription profiling of Arabidopsis transgenic seedlings overexpressing MINI ZINC FINGER 1 (MIF1)

Phytohormones play crucial roles in regulating many aspects of plant development. Although much has been learned about the effects of individual hormones, cross-talk between and integration of different hormonal signals are still not well understood. We present a study of MINI ZINC FINGER 1 (MIF1), ...

ORGANISM(S): Arabidopsis thaliana

2008-11-13 | E-GEOD-12729 | biostudies-arrayexpress

Comprehensive analysis of lncRNA-miRNA-mRNA during proliferative phase of rat liver regeneration.

Not available

S-EPMC6617821 | biostudies-literature

Multi-institutional study of post-transplantation cyclophosphamide as single-agent graft-versus-host disease prophylaxis after allogeneic bone marrow transplantation using myeloablative busulfan and fludarabine conditioning.

Not available

S-EPMC4209101 | biostudies-literature

de novo DNA Methylation Balances Hematopoietic Stem Cell Self-Renewal and Differentiation

Cytosine methylation is an epigenetic mark usually associated with gene repression. Despite a requirement for de novo DNA methylation for differentiation of embryonic stem cells, its role in somatic stem cells is unknown. Using conditional ablation, we show that loss of either, or both, Dnmt3a or Dn...

ORGANISM(S): Mus musculus

2011-09-30 | E-GEOD-27322 | biostudies-arrayexpress

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1214 Results

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