Decomposition - OmicsDI

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Unknown (10837)
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Organisms

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soil metagenome (2)
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Organisms

leaf litter metagenome (418)
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decomposition metagenome (27)
wood decay metagenome (15)
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rat metagenome (3)
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Cellulomonas sp. JGI 051 (2)
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ecological metagenomes (2)

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Technology Type

Mass Spectrometry (58)
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Instrument Platform

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UNIPROT ID/AC

O15105 (12)
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CHEBI ID

CHEBI:15428 (7)
CHEBI:17234 (2)
CHEBI:64301 (1)
CHEBI:26490 (1)
CHEBI:22194 (1)
CHEBI:25115 (1)
CHEBI:26806 (1)
CHEBI:27232 (1)
CHEBI:30867 (1)
CHEBI:68689 (1)
CHEBI:78679 (1)
CHEBI:53071 (1)
CHEBI:77131 (1)
CHEBI:57768 (1)
CHEBI:57754 (1)
CHEBI:17464 (1)
CHEBI:64476 (1)
CHEBI:27949 (1)
CHEBI:64475 (1)
CHEBI:15669 (1)
CHEBI:17530 (1)
CHEBI:14261 (1)
CHEBI:16547 (1)
CHEBI:36090 (1)
CHEBI:15518 (1)
CHEBI:17745 (1)
CHEBI:28813 (1)
CHEBI:16710 (1)
CHEBI:17164 (1)
CHEBI:11892 (1)

Metabolite Name

Taurine (7)
Guanosine (7)
Uridine (7)
L-Tyrosine (7)
L-Phenylalanine (7)
L-Aspartic acid (6)
Pantothenic acid (6)
Fumaric acid (6)
Adenine (6)
D-Glucose (5)
Glycine (5)
L-Threonine (5)
Choline (5)
Citric acid (5)
L-Glutamine (5)
L-Valine (5)
Threonic acid (4)
L-Alanine (4)
L-Lysine (4)
L-Asparagine (4)
N-lactoyl-phenylalanine (4)
1-Methylhistidine (4)
L-Kynurenine (4)
L-Histidine (4)
L-Glutamic acid (4)
Acetylcholine (4)
Stearic acid (4)
Cytosine (4)
Tetradecanedioic acid (4)
L-Tryptophan (4)

First Public Date

2018 (447)
2026 (181)
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2020 (99)
2022 (84)
2017 (75)
2019 (66)
2013 (57)
2016 (51)
2014 (38)
2015 (28)
2012 (1)
2011 (1)

Modelling Approach

Ordinary differential equation model (15)
Petri net (3)

Lab affiliation

University of Washington (3)
Department of environmental science and policy, University of Milan, Milan, Italy (2)
- Inst. of Neuroscience and Physiology, Dept. of Psychiatry and Neurochemistry, The Sahlgrenska Academy at University of Gothenburg, Mölndal, Sweden - Clinical Neurochemistry Laboratory, Sahlgrenska University Hospital, Mölndal, Sweden - Department of Molecular Neuroscience, UCL Institute of Neurology, Queen Square, London, UK (1)
Allergy Research Group, Instituto de Investigación Biomédica de Málaga-IBIMA, Málaga, Spain (1)
Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, Crawley, WA 6009, Australia (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising Germany (1)
Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， Beijing 102206 P.R. China. (1)
Biomedical Sciences , Iowa State University (1)
Cardio-Thoracic Translational Medicine (CTTM) Lab, Department of Surgical Sciences, Uppsala University, 752 37 Uppsala, Sweden (1)
Center for Proteomics & Artificial Intelligence Center for Clinical Mass Spectrometry Allegheny Health Network Cancer Institute 100 S Jackson Ave., Pittsburgh, PA 15202 (1)
Cleveland Clinic (1)
Department of Biological Sciences College of Arts and Sciences University of South Carolina (1)
Department of Biosciences, University of Oslo (1)
Department of Chemistry, Scripps Research (1)
Department of Life Sciences, Chalmers University of Technology, 412 96, Gothenburg, Sweden (1)
Department of Medical Protein Research, VIB & Department of Biochemistry, UGent, Ghent, Belgium (1)
Department of Otolaryngology, Head and Neck Surgery, Children’s Hospital Capital Institute of Paediatrics (1)
Department of Pharmacology, University of Nevada, Reno School of Medicine (1)
Discovery Proteomics Facility Target Discovery Institute University of Oxford (1)
Dr. Nico Jehmlich Group leader Microbiome Biology Molecular Systems Biology Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 4767 nico.jehmlich@ufz.de, www.ufz.de (1)
Ellison Building, Northumbria University, Newcastle Upon-Tyne, NE1 8ST, UK (1)
Ellison Place, Northumbria University Newcastle, NE18ST, Newcastle upon Tyne (UK) (1)
Ernst-Moritz-Arndt University Greifswald Institute of Microbiology Friedrich-Ludwig-Jahn-Strasse 15 D-17487 Greifswald, Germany (1)
Florida State University (1)
Fungal Molecular Ecology, Biosciences, Swansea University, Swansea, Wales (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15, 04318 Leipzig, Germany (1)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Department Molekulare Systembiologie Permoserstraße 15 04318 Leipzig, Germany (1)
Hematology Department, Harbin Medical University Cancer Hospital, Harbin, Heilongjiang, People’s Republic of China. (1)
Imperial College London, UK (1)
Institute for Microbial and Biochemical Sciences, Forest Products Laboratory, USDA (1)

IsPrivate

False (18)

Model Flag

Non Kinetic (3)

Classification

bacteria (9)
fungi (2)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (26)
RNA-seq of coding RNA from single cells (22)
Transcription profiling by tiling array (10)
RNA-seq of coding RNA (9)
Methylation profiling by array (5)
ChIP-seq (4)
Single nucleus RNA sequencing (3)
Unknown experiment type (2)
ScATAC-seq (2)
RNA-seq of non coding RNA (2)
Human - Methylation microarray (1)
Human - High-throughput sequencing (1)
High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Other (1)
RNA-seq of total RNA (1)

Release Date

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2003 (13)
2002 (7)
2001 (6)
2000 (5)
1999 (1)
1998 (1)

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Microbial community functioning during plant litter decomposition

Microbial life in soil is fueled by dissolved organic matter (DOM) that leaches from the litter layer. It is well known that decomposer communities adapt to the available litter source, but it remains unclear if they functionally compete or synergistically address different litter types. Therefor...

2024-02-14 | MTBLS1885 | MetaboLights

decomposition metagenome

decomposition metagenome Metagenomic assembly

PRJNA923095 | ENA

decomposition metagenome

decomposition metagenome Raw sequence reads

PRJNA1077653 | ENA

decomposition metagenome

decomposition metagenome Raw sequence reads

PRJNA918781 | ENA

Archaeal community across refuse decomposition

Archaeal community across refuse decomposition Raw sequence reads

PRJNA411954 | ENA

Sargassum decomposition metagenome

Rapid decomposition rates and nutrient cycling in pelagic Sargassum litter mediated by microbial communities

PRJNA1419322 | ENA

decomposition fluid from porcine carcass

Temporal succession of bacterial and fungal communities in porcine decomposition fluid under open and delayed insect-access conditions

PRJNA1502524 | ENA

Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems

Evidence shows that bacteria contribute actively to the decomposition of cellulose and hemicellulose in forest soil; however, their role in this process is still unclear. Here we performed the screening and identification of bacteria showing potential cellulolytic activity from litter and organic so...

ORGANISM(S): Mucilaginibacter Pedobacter sp. Luteibacter

2016-05-02 | PXD003844 | Pride

decomposition metagenome

The characteristics of low temperature composite microbiome decomposition of rice straw

PRJNA436114 | ENA

corpse decomposition and water volume

PRJEB42562 | ENA

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