Deep horizon - OmicsDI

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Unknown (759)
Genomics (46)
Transcriptomics (7)
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Coryphaena hippurus (5)
Sciaenops ocellatus (3)
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Organisms

Coryphaena hippurus (4)
Sciaenops ocellatus (3)
marine sediment metagenome (3)
beach sand metagenome (2)
seawater metagenome (2)
marine metagenome (2)
Tritonibacter horizontis (1)
uncultured prokaryote (1)
hydrocarbon metagenome (1)

Repository

ENA (43)
geo (7)
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biostudies-arrayexpress (3)
pride (3)

Tissue

Cell culture (2)
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Technology Type

Mass spectrometry (5)
Bottom-up proteomics (3)
Mass Spectrometry (3)
Mass spectrometry assay (2)
Data-dependent acquisition (1)
Data-independent acquisition (1)

Instrument Platform

Element AVITI (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Hybrid Quadrupole-Orbitrap high resolution mass spectrometer (Q Exactive Orbitrap; Thermo Scientific) (1)
Liquid Chromatography MS – positive - reverse phase (1)
Liquid Chromatography MS – negative - hilic (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2019 (6)
2026 (4)
2025 (3)
2016 (2)
2017 (2)
2024 (2)
2023 (1)

CHEBI ID

CHEBI:16695 (3)
CHEBI:16264 (3)
CHEBI:17659 (3)
CHEBI:16750 (3)
CHEBI:17858 (3)
CHEBI:16761 (3)
CHEBI:15811 (2)
CHEBI:30860 (2)
CHEBI:17822 (2)
CHEBI:26271 (2)
CHEBI:17202 (2)
CHEBI:30865 (2)
CHEBI:22660 (2)
CHEBI:28300 (2)
CHEBI:16742 (2)
CHEBI:73685 (2)
CHEBI:27470 (2)
CHEBI:48928 (2)
CHEBI:16002 (2)
CHEBI:29016 (2)
CHEBI:16704 (2)
CHEBI:15996 (2)
CHEBI:17533 (2)
CHEBI:15721 (2)
CHEBI:6650 (2)
CHEBI:18237 (2)
CHEBI:16108 (2)
CHEBI:15713 (2)
CHEBI:18066 (2)
CHEBI:15682 (2)

Metabolite Name

Riboflavin (2)
Uridine (2)
UDP (2)
Guanosine (2)
Arginine (2)
Glutathione disulfide (2)
ADP (2)
D-sedoheptulose-1-phosphate (1)
N-acetyl-glucosamine-6-phosphate (1)
Orotidine-5'-phosphate (1)
Octulose Bisphosphate (1)
Cyclic bis(3'->5') dimeric GMP (1)
Guanosine 5'-diphosphate-3'-diphosphate (1)
Trans,trans-farnesyl diphosphate (1)
4.Phaeophorbide a M+H (1)
2-(6-Chlorobenzoxazole-2-yl)-3-[2-[2-(acetylamino)-4-(dipropylamino)phenylazo]-4-(4-methylpiperazino)-5-thiazolyl]acrylonitrile (1)
2,5-Dimethylpyrimidin-4-amine (1)
(31R)-9,45-Seco-10-demercapto-9,10-didehydro-2-decarboxy-2-hydroxy-31-methyl-39-noracanthifolicin (1)
Cyclo[N(Me)Ala-D-N(Me)Phe-D-aIle-D-Val-Val-N(Me)Val-Leu] (1)
4-Quinazolone (1)
4-(1,2,4a,5-tetramethyl-7-oxo-1,2,3,4,4a,7,8,8a-octahydronaphthalen-1-yl)-2-methylidenebutanal (1)
Spectral Match to PAF C-16 from NIST14 M+H (1)
N-formyl-Val-Thr-Leu-Val-Pip-Leu-Pip (1)
4-[(1S,4S)-4-(3,4-dichlorophenyl)-1,2,3,4-tetrahydronaphthalen-1-yl]morpholine (1)
Spectral Match to 1-Hexadecanoyl-sn-glycerol from NIST14 M+H (1)
MGMG 16:0 (1)
1-(9Z-nonadecenoyl)-glycero-3-phosphocholine M+H (1)
Naftalina (1)
Spectral Match to 1-Palmitoyl-2-hydroxy-sn-glycero-3-phosphoethanolamine from NIST14 M+H (1)
PE(16:0/0:0); [M+H]+ C21H45N1O7P1 M+H (1)

First Public Date

2019 (7)
2018 (7)
2026 (4)
2016 (4)
2015 (4)
2025 (3)
2023 (3)
2017 (3)
2021 (2)
2013 (2)
2024 (1)
2022 (1)
2020 (1)
2014 (1)

Study type

MNase-seq (1)
ATAC-seq (1)
RNA-seq of coding RNA (1)

Release Date

2021 (112)
2024 (108)
2025 (105)
2023 (97)
2022 (96)
2020 (60)
2019 (50)
2018 (44)
2017 (19)
2016 (18)
2026 (17)
2014 (10)
2012 (10)
2015 (6)
2013 (6)
2011 (2)
2009 (1)

Lab affiliation

International Institute of Molecular and Cell Biology in Warsaw, Poland (1)
University of Freiburg Faculty of Biology Biochemistry/Functional Proteomics Schänzlestr. 1 79104 Freiburg Germany (1)
University of Washington Department of Genome Sciences (1)

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Transcriptomic responses to Deepwater Horizon oil in mahi-mahi (Coryphaena hippurus) embryos reveals time and oil-dependent linkages between molecular initiating events and developmental toxicity

Purpose:To help identify molecular mechanisms and pathways potentially involved in the developmental toxicity for fish exposed to Deepwater Horizon (DWH) oil, transcriptomic profiles in mahi-mahi (Coryphaena hippurus) embryos exposed to different DWH oils (source and artificially weathered oil) were...

ORGANISM(S): Coryphaena hippurus

2016-07-07 | E-GEOD-79675 | biostudies-arrayexpress

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume.

Not available

S-EPMC3260509 | biostudies-literature

Deep-sea benthic footprint of the deepwater horizon blowout.

Not available

S-EPMC3737147 | biostudies-literature

Footprint of Deepwater Horizon blowout impact to deep-water coral communities.

Not available

S-EPMC4136632 | biostudies-literature

Persistent and substantial impacts of the Deepwater Horizon oil spill on deep-sea megafauna.

Not available

S-EPMC6731716 | biostudies-literature

Effects of Repeated Sublethal External Exposure to Deep Water Horizon Oil on the Avian Metabolome.

Not available

S-EPMC6344488 | biostudies-literature

Discovery metaproteomics of microbiome from Petroleum Seepage in the deep-sea

Aqueous-soluble hydrocarbons dissolve into the ocean’s interior and structure deep-sea microbial populations influenced by natural oil seeps and spills. n-Pentane is a seawater-soluble, volatile compound abundant in petroleum products and reservoirs and will partition to the deep-water column follow...

ORGANISM(S): marine metagenome Bacteria

2025-02-27 | PXD052872 | Pride

Diverse, rare microbial taxa responded to the Deepwater Horizon deep-sea hydrocarbon plume.

Not available

S-EPMC4737931 | biostudies-literature

MicroRNA profiles in red drum (Sciaenops ocellatus) larvae exposed to Deepwater Horizon oil

PRJNA494063 | ENA

MicroRNA profiles in red drum (Sciaenops ocellatus) larvae exposed to Deepwater Horizon oil

Purpose:To help identify molecular regulatory mechanisms of developmental toxicity for fish exposed to Deepwater Horizon (DWH) oil, microRNA profiles in red drum larvae exposed to different DWH oils (source/mass and artificially weathered oil) were evaluated using High Throughput Sequencing (HTS). M...

ORGANISM(S): Sciaenops ocellatus

2019-01-09 | GSE120670 | GEO

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