Metaproteome - OmicsDI

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Proteomics (205)
Unknown (126)
Genomics (40)
Metabolomics (2)
Genomic (1)

Organisms

Allexis (169)
Arabidopsis thaliana (169)
Callinectes sapidus (169)
Danio rerio (169)
Drosophila (169)
Homo sapiens (4)
Mus musculus (2)
Acidobacteriaceae bacterium A2-4c (1)
Aeromicrobium erythreum (1)
Alphaproteobacteria bacterium (1)
Aurantiacibacter marinus (1)
Bacillus infantis (1)
Bacillus pacificus (1)
Betaproteobacteria bacterium TMED22 (1)
Candidatus Brocadiaceae (1)
Cyanobacteriota (1)
Enterococcus faecalis (1)
Escherichia coli (1)
Gammaproteobacteria bacterium (1)
Nocardioides marinus (1)
Prochlorococcus marinus str. AS9601 (1)
Pseudomonas abyssi (1)
Ruegeria sp. AD91A (1)
Vibrio azureus (1)
biocrust metagenome (1)
human oral bacteria ensemble (1)
marine metagenome (1)
cellular organisms (1)
gut metagenome (1)
human metagenome (1)

Organisms

marine metagenome (3)
Apriona swainsoni (1)
insect gut metagenome (1)
wastewater metagenome (1)
hot springs metagenome (1)
Bacteria (1)
human gut metagenome (1)
rhizosphere metagenome (1)
mine metagenome (1)
bioreactor sludge metagenome (1)

Repository

pride (169)
ENA (39)
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dbGaP (1)
EGA (1)
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PanoramaPublic (1)

Tissue

Feces (25)
Prokaryotic cell (6)
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Cell suspension culture (2)
Ileum (2)
Jejunum (2)
Saliva (2)
Skin (2)
Abomasum (1)
Bronchoalveolar lavage (1)
Cecum (1)
Cell line cell (1)
Culture supernatant (1)
Duodenum (1)
Enrichment culture (1)
Extracellular matrix secreting cell (1)
Gastrointestinal tract (1)
Gut (1)
HeLa cell (1)
Heart (1)
Intestinal mucosa (1)
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Leaf (1)
Liver (1)
Mycelium (1)
Omasum (1)

Disease

Disease free (6)
Acute leukemia (1)
Autoimmune disease of central nervous system (1)
Bacterial infectious disease (1)
Celiac disease (1)
Cystic fibrosis (1)
Obesity (1)
Respiratory failure (1)
Type 1 diabetes mellitus (1)

Technology Type

Mass Spectrometry (169)
Shotgun proteomics (132)
Bottom-up proteomics (19)
Data-dependent acquisition (13)
Gel-based experiment (9)
Metaproteomics (4)
Top-down proteomics (3)
Mass spectrometry (2)
Data-independent acquisition (2)
Affinity purification coupled with mass spectrometry proteomics (1)
All-ion fragmentation (1)

Instrument Platform

Orbitrap Fusion (5)
LTQ Orbitrap Elite (4)
Q Exactive Plus (4)
Orbitrap Fusion Lumos (2)
Q Exactive HF (2)
Synapt G2-S MS (2)
LTQ Orbitrap (Thermo Fisher Scientific) (1)
Q Exactive (1)
Flow injection analysis MS - (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
LTQ-Orbitrap (1)

Publication Date

2024 (28)
2019 (27)
2022 (27)
2023 (20)
2025 (20)
2021 (18)
2020 (13)
2018 (12)
2016 (11)
2017 (10)
2015 (5)
2026 (5)
2014 (2)
2012 (1)

CHEBI ID

CHEBI:28229 (2)
CHEBI:88550 (2)
CHEBI:88824 (2)
CHEBI:45441 (2)
CHEBI:17768 (2)
CHEBI:70979 (2)
CHEBI:40521 (2)
CHEBI:27838 (2)
CHEBI:35619 (2)
CHEBI:27410 (2)
CHEBI:18095 (2)
CHEBI:32980 (2)
CHEBI:27389 (2)
CHEBI:15901 (2)
CHEBI:16675 (2)
CHEBI:28747 (2)
CHEBI:15611 (2)
CHEBI:16040 (2)
CHEBI:17981 (2)
CHEBI:16525 (2)
CHEBI:17802 (2)
CHEBI:17140 (2)
CHEBI:1427 (2)
CHEBI:17066 (2)
CHEBI:16708 (2)
CHEBI:70744 (2)
CHEBI:15956 (2)
CHEBI:17724 (2)
CHEBI:15760 (2)
CHEBI:15728 (2)

Metabolite Name

Taurochenodesoxycholic acid (2)
Taurodeoxycholic acid (2)
Glycocholic acid (2)
S-Phenylmercapturic acid (1)
3-(3-methoxyphenyl)-2-oxopropanoic acid (1)
(2Z)-2-hydroxy-3-(3-methoxyphenyl)prop-2-enoic acid (1)
3-(4-methoxyphenyl)oxirane-2-carboxylic acid (1)
(2Z)-2-hydroxy-3-(4-methoxyphenyl)prop-2-enoic acid (1)
3-(4-methoxyphenyl)-2-oxopropanoic acid (1)
3-(4-methoxyphenyl)oxirane-2-carbaldehyde (1)
3-(2-hydroxy-4-methoxyphenyl)prop-2-enal (1)
3-(2-hydroxy-3-methoxyphenyl)prop-2-enal (1)
2-methyl-3-phenyloxirane-2-carboxylic acid (1)
2-methoxybenzene-1,4-diol (1)
4-methoxybenzene-1,2-diol (1)
2-methoxybenzene-1,3-diol (1)
5-methoxybenzene-1,3-diol (1)
3-hydroxy-2-(hydroxymethyl)-2-methylpropanoic acid (1)
4-(Methylthio)-2-pentanone (1)
4-Mercapto-4-methylpentan-2-one (1)
5-Keto-caproic acid (1)
()-Furaneol (1)
4-hydroxy-2-methylbutanoic acid (1)
Methyl 3-hydroxy-butanoate (1)
3-(Methylthio)-2-butanone (1)
3-(Methylthio)butanal (1)
4-(Methylthio)butanal (1)
2-Mercapto-3-pentanone (1)
3-Mercapto-2-pentanone (1)
S-Propyl thioacetate (1)

First Public Date

2019 (7)
2017 (7)
2023 (6)
2022 (4)
2020 (4)
2018 (3)
2026 (2)
2024 (2)
2021 (2)
2016 (2)

Modification

15.994915 (1)
57.021464 (1)

Release Date

2021 (14)
2025 (13)
2022 (13)
2019 (13)
2024 (12)
2023 (12)
2020 (10)
2017 (10)
2018 (8)
2016 (6)
2013 (4)
2011 (3)
2014 (2)
2012 (2)
2026 (1)
2015 (1)
2007 (1)
2006 (1)

Lab affiliation

North Carolina State University (11)
Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany (6)
Centre of Biological Engineering, Minho University (4)
Quantitative Proteomics Proteome Center Tübingen Universität Tübingen Auf der Morgenstelle 15 72076 Tübingen (4)
University of Vienna (4)
Department of Biomedical Sciences, University of Sassari, Sassari, Italy (3)
Institute for Microbiology, University of Greifswald, Felix-Hausdorff-Straße 8, 17489 Greifswald, Germany (3)
University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology (3)
University of Hohenheim, Institute of Animal Science, Stuttgart, Germany (3)
BMI, Faculty of Medicine, University of Ottawa, Canada (2)
Department Molekulare Systembiologie Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Permoserstraße 15 | 04318 Leipzig Telefon +49 341 235 4767 | Fax +49 341 235 450823 (2)
Department of Biomedical Sciences, University of Sassari, Italy (2)
Department of Geoscience, University of Calgary (2)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (2)
Pacific Northwest National Laboratory, USA (2)
Porto Conte Ricerche (2)
Porto Conte Ricerche, Science and Technology Park of Sardinia, Tramariglio, Alghero, Italy (2)
School of Biotechnology and Biomolecular Sciences The University of NSW Sydney NSW 2052 Australia (2)
University of Calgary (2)
University of Washington, Department of Genome Sciences (2)
1UNSW Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, NSW 2052, Australia (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Applied Biosciences and Process Engineering, Anhalt University of Applied Sciences, Microbiology, Bernburger Straße 55, 06354 Köthen, Germany (1)
Associate Professor of Medicine, Division of Pulmonary, Allergy, Critical Care and Sleep Medicine University of Minnesota (1)
Bioprocess Engeneering, IVT, Otto-von-Guericke University, Magdeburg, Germany (1)
Bioprocess Engineering, Otto von Guericke University Magdeburg, Magdeburg, Germany Max Planck Institute for Dynamics of Complex Technical Systems, Bioprocess Engineering, Magdeburg, Germany. (1)
CINDEFI-CONICET-UNLP (1)
CSIRO Agriculture and Food, 306 Carmody Rd, St Lucia QLD 4067, Australia (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany (1)
Chan Zuckerberg Biohub Platform Leader (1)

Tags

xref:PubMed:33260576 (1)
xref:PubMed:34236226 (1)
xref:PubMed:37491408 (1)
xref:PubMed:29067007 (1)
xref:PubMed:27671352 (1)
wastewater (1)

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beetle metagenome and metaproteome

PRJNA510434 | ENA

Addressing the challenge of soil metaproteome complexity by improving metaproteome depth of coverage

Investigation of LC-MS/MS approaches to improve soil metaproteome depth of coverage for a Kansas prairie native soil

ORGANISM(S): environmental samples

2018-11-21 | PXD008895 | Pride

Metaproteome Soil

microbial metaproteome from global ocean

This project contains metaproteome for marine planktonic communities including eukaryotes, bacteria, archaea and viruses

ORGANISM(S): Escherichia coli

2023-03-08 | PXD034421 | Pride

Marine metaproteome

Mining gut microbiome oligopeptides by functional metaproteome display.

Not available

S-EPMC5050496 | biostudies-literature

Metaproteome

2025-05-29 | OEX00020523 | NODE

Metaproteome analysis of endodontic infections in association with different clinical conditions.

Not available

S-EPMC3797121 | biostudies-literature

Critical Assessment of Metaproteome Investigation (CAMPI): a Multi-Lab Comparison of Established Workflows

Metaproteomics, the study of the collective proteome within a microbial ecosystem, has substantially grown over the past few years. This growth comes from the increased awareness that it can powerfully supplement metagenomics and metatranscriptomics analyses. Although metaproteomics is more challeng...

ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606)

2022-06-08 | MSV000089620 | MassIVE

Relating human gut metagenome and metaproteome

Gut microbiome research is rapidly moving towards the functional characterization of the microbiota by means of shotgun meta-omics. Here, we selected a cohort of healthy subjects from an indigenous and monitored Sardinian population to analyze their gut microbiota using both shotgun metagenomics and...

ORGANISM(S): human gut metagenome

2017-07-19 | PXD005780 | Pride

Gut metagenome Gut metaproteome Metaproteomics

An integrated workflow for enhanced taxonomic and functional coverage of the mouse fecal metaproteome.

Not available

S-EPMC8726736 | biostudies-literature

Critical Assessment of MetaProteome Investigation 2 (CAMPI-2): multi-laboratory assessment of sample processing methods to stabilize fecal microbiome for functional analysis.

Not available

S-EPMC12661826 | biostudies-literature

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374 Results

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