Deinococcus - OmicsDI

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Unknown (653)
Genomics (251)
Transcriptomics (51)
Proteomics (34)
Metabolomics (4)
Other (2)
Methylation profiling (1)

Organisms

Deinococcus radiodurans (20)
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (15)
Escherichia coli (6)
Thermus thermophilus HB8 (3)
Deinococcus gobiensis (2)
Deinococcus deserti (2)
Deinococcus geothermalis DSM 11300 (2)
Homo sapiens (2)
dechlorinating enrichment culture KB-1 (1)
uncultured bacterium (1)
Tannerella forsythia (1)
Cutibacterium acnes (1)
Streptococcus intermedius (1)
Capnocytophaga gingivalis (1)
Phocaeicola vulgatus (1)
Campylobacter rectus (1)
Prevotella nigrescens (1)
Deinococcus metallilatus (1)
Clostridium beijerinckii (1)
Prevotella intermedia (1)
Treponema denticola (1)
Aggregatibacter actinomycetemcomitans (1)
Fusobacterium nucleatum subsp. nucleatum (1)
Shewanella oneidensis MR-1 (1)
Schaalia odontolytica (1)
Bacteria (1)
Bifidobacterium adolescentis (1)
Streptococcus agalactiae (1)
Bacillus cereus (1)
Enterococcus faecalis (1)

Organisms

Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (23)
Deinococcus radiodurans (20)
Deinococcus metallilatus (5)
Deinococcus soli (ex Cha et al. 2016) (5)
Deinococcus enclensis (4)
Deinococcus grandis (4)
Deinococcus radiophilus (3)
Deinococcus deserti (3)
Deinococcus actinosclerus (3)
Deinococcus humi (3)
Deinococcus ficus (3)
Deinococcus wulumuqiensis (3)
Deinococcus geothermalis DSM 11300 (3)
Deinococcus aquaticus (3)
Deinococcus psychrotolerans (2)
Deinococcus taeanensis (2)
Deinococcus radiopugnans ATCC 19172 (2)
Deinococcus gobiensis (2)
Deinococcus marmoris (2)
Deinococcus wulumuqiensis R12 (2)
Deinococcus radiopugnans (2)
Deinococcus cellulosilyticus NBRC 106333 = KACC 11606 (2)
Deinococcus sp. VB142 (2)
hot springs metagenome (2)
Escherichia coli (2)
soil metagenome (2)
Mus musculus (2)
Deinococcus deserti VCD115 (1)
Deinococcus gobiensis I-0 (1)
Deinococcus puniceus (1)

Repository

ENA (248)
geo (35)
pride (25)
biostudies-arrayexpress (21)
MassIVE (6)
MetaboLights (4)
iProX (3)
NODE (1)

Tissue

Cell culture (1)
Cell suspension culture (1)
Whole body (1)

Technology Type

Mass Spectrometry (25)
Shotgun proteomics (17)
Mass spectrometry (4)
Bottom-up proteomics (3)
Top-down proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)

Instrument Platform

LTQ Orbitrap Elite (4)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (2)
LTQ-Orbitrap (2)
Illumina HiSeq 2500 (1)
LTQ (1)
LTQ FT (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF-X (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2010 (15)
2024 (11)
2014 (9)
2021 (9)
2022 (7)
2023 (7)
2025 (6)
2015 (5)
2011 (4)
2019 (4)
2009 (4)
2012 (2)
2026 (2)
2020 (2)
2017 (2)
2018 (1)
2008 (1)
2006 (1)
2013 (1)

CHEBI ID

CHEBI:195170 (1)
CHEBI:194557 (1)
CHEBI:195168 (1)
CHEBI:195169 (1)
CHEBI:194577 (1)
CHEBI:194574 (1)
CHEBI:194576 (1)
CHEBI:194575 (1)
CHEBI:194578 (1)
CHEBI:194573 (1)
CHEBI:194572 (1)
CHEBI:194559 (1)
CHEBI:194579 (1)
CHEBI:53455 (1)
CHEBI:16822 (1)
CHEBI:16016 (1)
CHEBI:82392 (1)
CHEBI:18132 (1)
CHEBI:17126 (1)
CHEBI:18295 (1)
CHEBI:73026 (1)
CHEBI:28790 (1)
CHEBI:15355 (1)
CHEBI:17750 (1)
CHEBI:16919 (1)
CHEBI:15354 (1)

Metabolite Name

DG(19:0/0:0/TXB2) (1)
2-Amino-4-chloropyridine (1)
Para-Trifluoromethylphenol (1)
Cis-Mulberroside A (1)
3-(3,4-Dihydroxyphenyl)prop-2-enoic Acid (1)
3-Dimethylallyl-4-Hydroxybenzoic Acid (1)
Ampelopsin D (1)
ALPINETIN METHYL ETHER (1)
Alpha,beta-Dihydroxanthohumol (1)
PA(20:4(6E,8Z,11Z,13E)-2OH(5S,15S)/2:0) (1)
6beta-Hydroxycampest-4-ene-3-one (1)
MG(0:0/18:1(12Z)-2OH(9,10)/0:0) (1)
Temarotene (1)
PE(15:1/0:0) (1)
5-Kete (1)
Gamma-Fagarine (1)
P-coumaroyltyramine (1)
Ezetimibe-glucuronide (1)
MG(20:4(6Z,8E,10E,14Z)-2OH(5S,12R)/0:0/0:0) (1)
Ent-Aprepitant (1)
Sennidin C (1)
3-Hydroxy-5,5,8a-Trimethyl-3,4,4a,6,7,8-Hexahydronaphthalene-2-Carboxylic Acid (1)
Denbufylline (1)
Fipronil Sulfone (1)
13-Hydroxy-7,14-Labdadien-6-one (1)
4-Chloro-3-ethoxy-7-guanidinoisocoumarin (1)
Dioxidine (1)
5-Methyleriodictyol 7-[glucosyl-(1->4)-galactoside] (1)
ZOPOLRESTAT (1)
[(2S,3S,4R,5R)-3,4,5,6-Tetrahydroxyhexan-2-yl] 2-hydroxypropanoate (1)

First Public Date

2013 (49)
2014 (21)
2025 (20)
2019 (20)
2020 (18)
2017 (18)
2024 (17)
2026 (16)
2023 (14)
2022 (13)
2021 (13)
2018 (13)
2015 (10)
2016 (6)

Classification

bacteria (2)

Modification

15.994915 (3)
57.021464 (3)

Study type

Transcription profiling by array (16)
Comparative genomic hybridization by array (2)
RNA-seq of coding RNA (2)
RNA-seq of non coding RNA (1)

Release Date

2021 (61)
2022 (55)
2020 (50)
2023 (49)
2024 (42)
2019 (41)
2014 (37)
2015 (32)
2017 (32)
2025 (28)
2010 (28)
2018 (28)
2013 (23)
2016 (22)
2012 (20)
2009 (20)
2008 (16)
2011 (15)
2007 (13)
2005 (13)
2006 (12)
2002 (10)
2004 (8)
2026 (4)
2003 (4)
2001 (3)
2000 (3)
1999 (2)
1998 (1)
1997 (1)

Lab affiliation

CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (5)
Beijing Institute of Technology (3)
CEA, DRF, IBiTec-S, SPI, Li2D, Laboratory "Innovative technologies for Detection and Diagnostics" (3)
Li2D (3)
McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA (2)
1McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA (1)
BHABHA ATOMIC RESEARCH CENTER MUMBAI (1)
Center for Genomic Science Innovation Department of Biochemistry University of Wisconsin-Madison (1)
Department of Biophysical Chemistry, University of Vienna, Vienna, Austria (1)
Department of Plant Physiology, Warsaw University of Life Sciences - SGGW, Nowoursynowska Str. 159, 02776, Warsaw, Poland (1)
Deputy of the Department of Biophysical Chemistry Head of Space Biochemistry Group Elisa Richter Fellow Representative of Austria and Executive Council Member of the European Astrobiological Network EANA (1)
Key Laboratory of Chinese Ministry of Agriculture for Nuclear-Agricultural Sciences, Institute of Nuclear-Agricultural Sciences, Zhejiang University, China (1)
McKetta Department of Chemical Engineering, The University of Texas at Austin, USA (1)
Space Biochemistry Group, Department of Biophysical Chemistry, University of Vienna, Vienna, Austria (1)

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Exposure of Deinococcus Radiodurans to 1126 Days in low Earth orbit: Molecular Patterns of Recovery after Tanpopo space Mission

Background: The International Space Station is an orbiting laboratory for microbial research in space, where microorganisms can be exposed to multiple extremes. Dehydrated cell clusters of extremophilic bacterium Deinococcus radiodurans have survived 3-year exposure outside the International Space S...

ORGANISM(S): Deinococcus radiodurans

2025-02-27 | E-MTAB-13969 | biostudies-arrayexpress

Genome-wide transcriptome analysis of UV response in D. gobiensis I-0

We report genome-wide transcriptional UV response in Deincoccus gobiensis Examination of the transcriptomes before and after UV irradiation in Deinococcus gobiensis

ORGANISM(S): Deinococcus gobiensis

2011-12-30 | E-GEOD-29088 | biostudies-arrayexpress

Deinococcus actinosclerus

Deinococcus actinosclerus Genome sequencing

PRJNA474625 | ENA

Deinococcus grandis

Deinococcus grandis overview

PRJNA37459 | ENA

Deinococcus proteolyticus

Deinococcus proteolyticus overview

PRJNA42023 | ENA

Deinococcus geothermalis

Deinococcus geothermalis overview

PRJNA35515 | ENA

Molecular repertoire of Deinococcus radiodurans after 1 year of exposure outside the International Space Station within the Tanpopo mission

Abstract Background The extraordinarily resistant bacterium Deinococcus radiodurans withstands harsh environmental conditions present in outer space. Deinococcus radiodurans was exposed for one year outside the International Space Station within Tanpopo orbital mission to investigate microbial surv...

ORGANISM(S): Deinococcus radiodurans R1

2021-09-09 | PXD020047 | Pride

Deinococcus hopiensis

Deinococcus hopiensis overview

PRJNA42139 | ENA

Deinococcus radiodurans R1 Cells: Control vs. bphPR deletion mutant

Transcriptional profiling of Deinococcus radiodurans comparing control wild type cells with bphPR deletion mutant Two-condition experiment, R1 vs. bphPR deletion cell. Biological replicates: 3 control replicates, 3 bphPR deletion mutant replicates.

ORGANISM(S): Deinococcus radiodurans R1

2014-07-07 | E-GEOD-59135 | biostudies-arrayexpress

Deinococcus maricopensis

Deinococcus maricopensis overview

PRJNA43497 | ENA

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