Deng W W - OmicsDI

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Unknown (9836)
Transcriptomics (248)
Proteomics (183)
Genomics (31)
Metabolomics (25)

Organisms

Homo sapiens (122)
Mus musculus (88)
Arabidopsis thaliana (27)
Rattus norvegicus (10)
Oryza sativa (10)
Colinus virginianus (8)
Mus musculus x Mus spretus (5)
Drosophila melanogaster (4)
groundwater metagenome (3)
Macaca mulatta (3)
Pseudomonas aeruginosa (3)
Volvariella volvacea (2)
Zea mays (2)
Glycine max (2)
Oryza sativa Japonica Group (2)
Caenorhabditis elegans (2)
Tremella fuciformis (1)
Pseudomonas aeruginosa MPAO1/P1 (1)
Pseudomonas syringae (1)
Acromyrmex echinatior (1)
Saccharina japonica (1)
Hevea brasiliensis (1)
Manihot esculenta (1)
Sphingomonas paucimobilis (1)
uncultured organism (1)
Eisenia fetida (1)
Citrus reticulata (1)
Synechocystis sp. PCC 6803 (1)
Salmonella enterica (1)
Pseudomonas syringae pv. tomato str. DC3000 (1)

Repository

biostudies-arrayexpress (272)
pride (126)
iProX (53)
MetaboLights (25)
EGA (7)
MassIVE (3)
jPOST (1)

Tissue

Cell culture (35)
Epithelial cell (12)
Plant cell (7)
Kidney (6)
Brain (5)
Hepatocyte (5)
Permanent cell line cell (5)
Stem cell (5)
Lung (4)
Macrophage (4)
Leaf (3)
Liver (3)
Primary cell (3)
Skin (3)
Testis (3)
Urine (3)
Whole body (3)
Cell suspension culture (2)
Colon (2)
Cornea (2)
Early embryonic cell (2)
Embryonic stem cell (2)
Haploid cell (2)
HeLa cell (2)
Pancreas (2)
Shoot (2)
A549-CR cell (1)
B cell (1)
Bile duct (1)
Blood (1)

Disease

Disease free (7)
Colon cancer (4)
Acute leukemia (3)
Renal clear cell carcinoma (3)
Liver cancer (2)
High bone mineral density (1)
Melanoma (1)
Alzheimer's disease (1)
Brain glioblastoma multiforme (1)
Cervix carcinoma (1)
Cholangiocarcinoma (1)
Crohn's disease (1)
Herpes zoster (1)
Lung cancer (1)
Malignant neoplasm of ovary (1)
Mixed disorder as reaction to stress (1)
Myopia (1)
Neck carcinoma (1)
Non-small cell lung carcinoma (1)
Osteosarcoma (1)
Pancreatic ductal adenocarcinoma (1)
Prostate adenocarcinoma (1)
Prostate cancer (1)
Renal cell carcinoma (1)
Sensory peripheral neuropathy (1)
Severe acute respiratory syndrome (1)
Stomach carcinoma (1)
Systemic lupus erythematosus (1)
Wounds and Injuries (1)
Zika fever (1)

Technology Type

Mass Spectrometry (126)
Shotgun proteomics (63)
Mass spectrometry (21)
Bottom-up proteomics (19)
Data-dependent acquisition (15)
Affinity purification coupled with mass spectrometry proteomics (13)
Gel-based experiment (12)
Data-independent acquisition (9)
Top-down proteomics (4)
NMR spectroscopy (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
HDMSE (2)
Proteogenomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Immunopeptidomics (1)
RNA mass spectrometry (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (13)
Liquid Chromatography MS - negative - reverse phase (12)
Illumina HiSeq 2000 (5)
Liquid Chromatography MS - negative - hilic (4)
Liquid Chromatography MS - positive - hilic (4)
Bruker (3)
BGISEQ-500 (2)
NextSeq 550 (2)
Illumina HiSeq 2500 (2)
Orbitrap Eclipse (2)
Eppendorf EpMotion 5073m pipetting robot (1)
GenePix 4000B Microarray Scanner (Molecular Devices). (1)
Agilent Bioanalyzer 2100 (1)
Agilent Microarray Scanner (1)
Sony SH800 (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - Negative - HILIC (1)
Liquid Chromatography MS - Positive - HILIC (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2014 (55)
2013 (45)
2023 (40)
2022 (39)
2015 (34)
2011 (33)
2016 (28)
2010 (28)
2024 (24)
2026 (23)
2012 (21)
2025 (20)
2021 (20)
2020 (14)
2009 (12)
2018 (11)
2017 (10)
2019 (10)
2008 (6)
2007 (5)
2006 (1)
2004 (1)

CHEBI ID

CHEBI:17596 (12)
CHEBI:17368 (12)
CHEBI:17203 (11)
CHEBI:16737 (11)
CHEBI:17895 (11)
CHEBI:18132 (10)
CHEBI:16708 (9)
CHEBI:28044 (9)
CHEBI:15971 (9)
CHEBI:16015 (9)
CHEBI:15756 (9)
CHEBI:16828 (9)
CHEBI:30769 (9)
CHEBI:15956 (8)
CHEBI:18183 (8)
CHEBI:17821 (8)
CHEBI:18050 (8)
CHEBI:17568 (8)
CHEBI:17015 (8)
CHEBI:18019 (8)
CHEBI:16467 (8)
CHEBI:16750 (8)
CHEBI:17154 (8)
CHEBI:16335 (8)
CHEBI:16919 (8)
CHEBI:16414 (8)
CHEBI:17295 (8)
CHEBI:17351 (8)
CHEBI:16927 (7)
CHEBI:506227 (7)

Metabolite Name

Creatinine (9)
L-Proline (8)
L-Tryptophan (8)
L-Tyrosine (8)
Inosine (8)
Hypoxanthine (8)
L-Arginine (7)
L-Lysine (7)
Adenosine (7)
L-Glutamate (7)
L-Phenylalanine (7)
PC(16:0/16:0) (6)
Cyclohexylamine (6)
Betaine (6)
L-Histidine (6)
Cytosine (6)
Adenine (6)
Creatine (6)
1-Methyladenosine (6)
5-L-Glutamyl-L-alanine (5)
DL-Phenylalanine (5)
N6,N6,N6-Trimethyl-L-lysine (5)
L-Norleucine (5)
Uracil (5)
Sphingosine (5)
1-Aminocyclopropanecarboxylic acid (5)
Pantothenate (5)
Nicotinamide (5)
Xanthosine (5)
Glutathione (5)

Modification

N6 (1)

Study type

Transcription profiling by array (137)
RNA-seq of coding RNA (68)
ChIP-seq (18)
Comparative genomic hybridization by array (9)
RNA-seq of non coding RNA (9)
ChIP-chip by tiling array (7)
Transcription profiling by tiling array (6)
Methylation profiling by array (4)
Methylation profiling by high throughput sequencing (4)
Genotyping by array (3)
DNA-seq (2)
RNA-seq of coding RNA from single cells (2)
ATAC-seq (1)
Other (1)
RNA-seq of total RNA (1)

Release Date

2025 (1557)
2022 (1412)
2023 (1257)
2024 (1207)
2021 (1052)
2020 (775)
2019 (505)
2018 (411)
2017 (374)
2016 (313)
2015 (258)
2014 (241)
2026 (211)
2013 (156)
2012 (101)
2011 (80)
2010 (73)
2009 (51)
2008 (27)
2007 (16)
2006 (11)
2004 (8)
2003 (4)
2005 (3)
1998 (2)
2002 (1)
2001 (1)
1997 (1)

Lab affiliation

Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (2)
Carnegie Mass Spectrometry Facility (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Jinan University (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
MOBILion Systems, Inc. (2)
Peking University (2)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (2)
tsinghua university (2)
1)Chongqing Medical University;2) Chongqing Key Laboratory of Translational Research for Cancer Metastasis and Individualized Treatment, Chongqing University Cancer Hospital (1)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (1)
Associate Professor (1)
Associate Professor Developmental and Regenerative Biology School of Biomedical Sciences Faculty of Medicine The Chinese University of Hong Kong (1)
Beijing proteome research center, Beijing, China (1)
Biozentrum, University of Basel, Basel, Switzerland (1)
Cancer Research Institute and School of Basic Medicine Sciences, Central South University, Changsha, Hunan, China (1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (1)
Carnegie Mass Spec Facility (1)
Center for Cell Lineage and Development, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, GIBH-HKU Guangdong-Hong Kong Stem Cell and Regenerative Medicine Research Centre, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China. (1)
Center for Liver Transplantation, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei 430022, China. (1)
Centre for High-Throughput Biology, University of British Columbia (1)
Chair of Proteomics and Bioanalytics, Technische Universitaet Muenchen (1)
Chinese Academy of Sciences University,Center for Excellence in Molecular & Cellular Sciences, State Key Laboratory of Molecular Biology, Institute of Biochemistry & Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yueyang Rd., Shanghai, China 200031 (1)
College of Biological and Pharmaceutical Sciences, China Three Gorges University (1)
Department of Biochemistry and Molecular Cell Biology, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Shanghai Jiao Tong University School of Medicine (1)
Department of Biochemistry, Purdue University State Key Laboratory of Bioelectronics, National Demonstration Center for Experimental Biomedical Engineering Education,Southeast University (1)
Department of Biochemistry, The University of British Columbia, Vancouver, Canada (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. Department of Cell Biology, Harvard Medical School, Boston, MA, USA. (1)

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Spread of Neisseria meningitidis serogroup W clone, China.

Not available

S-EPMC3810921 | biostudies-literature

Transcription profiling of Drosophila male third instar larva y+ w roX1- roX2-/y vs y+ w roX1+ roX2-/y reveals roX RNAs are required for increased expression of X-linked genes in Drosophila melanogaster males

Drosophila males double transcription of their single X chromosome to equalize X-linked gene expression with females, which carry two X chromosomes. Increased transcription requires the Male-Specific Lethal (MSL) complex. One of the primary functions of the MSL complex is thought to be enrichment ...

ORGANISM(S): Drosophila melanogaster

2008-03-13 | E-GEOD-3990 | biostudies-arrayexpress

Grain boundary diffusion cannot explain the W isotope heterogeneities of the deep mantle.

Not available

S-EPMC11845664 | biostudies-literature

Decoding Pecan's Fungal Foe: A Genomic Insight into <i>Colletotrichum plurivorum</i> Isolate W-6.

Not available

S-EPMC11943440 | biostudies-literature

Characterization of the First W-Specific Protein-Coding Gene for Sex Identification in Helicoverpa armigera.

Not available

S-EPMC7317607 | biostudies-literature

Transcriptional Response to Ciprofloxacin in Enteropathogenic Escherichia coli Deng

We employed a genome-wide microarray approach to obtain a profile of the transcriptional events in ciprofloxacin-treated EPEC shedding light on how ciprofloxacin affects EPEC transcriptional events and growth, aside from resistance mechanisms, and how this bacterium tolerates antibiotic stress. Samp...

ORGANISM(S): Escherichia coli

2015-12-15 | E-GEOD-75988 | biostudies-arrayexpress

Thermal Conductivity above 2,000 W/m·K in Boron Arsenide by Nanosecond Transducer-Less Time-Domain Thermoreflectance.

Not available

S-EPMC12554925 | biostudies-literature

Angiotensin II increases angiogenesis by NF-κB-mediated transcriptional activation of angiogenic factor AGGF1.

Not available

S-EPMC6103173 | biostudies-literature

Toxin-antitoxin operon kacAT of Klebsiella pneumoniae is regulated by conditional cooperativity via a W-shaped KacA-KacT complex.

Not available

S-EPMC6698736 | biostudies-literature

The complete chloroplast genome sequence of Didymocarpus yuenlingensis W. T. Wang 1982.