Deng Xiong X - OmicsDI

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Unknown (545)
Proteomics (18)
Transcriptomics (3)
Metabolomics (3)
Genomics (1)

Organisms

Mus musculus (12)
Homo sapiens (6)
Oryza sativa (1)
Oryctolagus cuniculus (1)
Staphylococcus aureus (1)
Danio rerio (1)
Enterococcus faecalis (1)
Rattus norvegicus (1)

Repository

pride (12)
iProX (6)
biostudies-arrayexpress (4)
MetaboLights (3)

Tissue

Cell culture (3)
Brain (2)
Testis (2)
Cell suspension culture (1)
Embryo (1)
Embryonic stem cell (1)
Nasopharyngeal epithelial cell (1)
Stem cell (1)
Stomach (1)
Stomach lumen (1)

Disease

Neck carcinoma (1)
Stomach carcinoma (1)

Technology Type

Mass Spectrometry (12)
Shotgun proteomics (4)
Gel-based experiment (3)
Mass spectrometry (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Proteogenomics (2)
Mass spectrometry assay (1)
Bottom-up proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2022 (5)
2026 (4)
2021 (4)
2024 (3)
2023 (3)
2011 (2)
2015 (1)
2010 (1)
2025 (1)
2019 (1)

CHEBI ID

CHEBI:116314 (2)
CHEBI:137230 (2)
CHEBI:137717 (2)
CHEBI:140473 (2)
CHEBI:156149 (2)
CHEBI:15741 (2)
CHEBI:15843 (2)
CHEBI:15971 (2)
CHEBI:16015 (2)
CHEBI:16031 (2)
CHEBI:16196 (2)
CHEBI:16235 (2)
CHEBI:16414 (2)
CHEBI:16467 (2)
CHEBI:16566 (2)
CHEBI:166765 (2)
CHEBI:16704 (2)
CHEBI:16828 (2)
CHEBI:16831 (2)
CHEBI:16856 (2)
CHEBI:16857 (2)
CHEBI:168611 (2)
CHEBI:16962 (2)
CHEBI:16990 (2)
CHEBI:17015 (2)
CHEBI:17053 (2)
CHEBI:17191 (2)
CHEBI:17196 (2)
CHEBI:17203 (2)
CHEBI:172134 (2)

Metabolite Name

L-Arginine (2)
()-3-Hydroxybutyric acid (1)
()-Enterolactone (1)
(+)-7-epi--9,10-dihydrojasmonic acid (1)
(+)-8'-hydroxyabscisic acid (1)
(+)-Galeon (1)
(+)-abscisic acid beta-D-glucopyranosyl ester (1)
(+)-subersic acid (1)
(+/-)-Ethyl 3-acetoxy-2-methylbutyrate (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid 11-beta-D-glucoside (1)
(-)-12-hydroxy-9,10-dihydrojasmonic acid (1)
(-)-5,7-Dihydroxy-3-(4-hydroxybenzyl)-4-chromanone (1)
(-)-8-hydroxy-11E,17-octadecadien-9-ynoic acid (1)
(-)-Linderol A (1)
(-)-Salvisyriacolide (1)
(-)-Sativan (1)
(1(10)E,4E,6a,8b)-8-Angeloyloxy-14-oxo-1(10),4,11(13)-germacratrien-12,6-olide (1)
(1(10)E,4a,5E)-1(10),5-Germacradiene-12-acetoxy-4,11-diol (1)
(10betaH,11xi)-11-Hydroxy-13-nor-6-eremophilen-8-one (1)
(1R,3R,4R,5S,6S,8x)-1-Acetoxy-8-angeloyloxy-3,4-epoxy-5-hydroxy-7(14),10-bisaboladien-2-one (1)
(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate (1)
(1S,2R,4R,8S)-p-Menthane-2,8,9-triol 2-glucoside (1)
(1S,2R,4R,8S)-p-Menthane-2,8,9-triol 9-glucoside (1)
(1S,2S,4R)-p-Menth-8-ene-1,2,10-triol 2-glucoside (1)
(1S,2S,4R,5S,7S)-2,5,7-Fenchanetriol 2-O-b-D-glucoside (1)
(1S,2S,4R,8S)-p-Menthane-1,2,8,9-tetrol 2-glucoside (1)
(1beta,2beta,5beta)-p-Menth-3-ene-1,2,5-triol (1)
(1x,2x)-Guaiacylglycerol 3-glucoside (1)
(1xi,3S)-1,2,3,4-Tetrahydro-1-methyl-beta-carboline-1,3-dicarboxylic acid (1)

Study type

RNA-seq of coding RNA (2)
Transcription profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (89)
2024 (87)
2023 (85)
2022 (69)
2021 (54)
2020 (38)
2019 (25)
2017 (22)
2016 (20)
2018 (16)
2026 (13)
2015 (8)
2014 (6)
2011 (4)
2013 (3)
2012 (3)
2009 (3)
2010 (2)
2007 (1)
2001 (1)

Lab affiliation

Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
Cancer Research Institute and School of Basic Medicine Sciences, Central South University, Changsha, Hunan, China (1)
Center for Cell Lineage and Development, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, GIBH-HKU Guangdong-Hong Kong Stem Cell and Regenerative Medicine Research Centre, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China. (1)
Department of Clinical Laboratory, Shenshan Central Hospital, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Shanwei, China (1)
Department of Gastrointestinal Surgery, Zhongshan Hospital of Xiamen University, School of Medicine, Xiamen (1)
Department of General Surgery, Pancreatic Disease Center, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
Key Laboratory of Cell Proliferation and Differentiation of the Ministry of Education, School of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China (1)
Shenzhen Sixth People's Hospital: Shenzhen, Guangdong, CN (1)
Tsinghua University (1)

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An Integrative Pharmacology-Based Strategy to Uncover the Mechanism of Xiong-Pi-Fang in Treating Coronary Heart Disease with Depression.

Not available

S-EPMC8048422 | biostudies-literature

Deep Succinylproteomics of Brain Tissues of Intracerebral Hemorrhage with inhibition of Toll-like receptor 4 signaling

The details of Toll-like receptor (TLR) 4 signaling affects protein succinylation in intracerebral hemorrhage (ICH) brains remains completely unclear. In this study, we constructed mice ICH models to investigate the changes in ICH-associated brain protein succinylation with the treatment of TLR4 ant...

ORGANISM(S): Mus musculus (Mouse)

2021-11-03 | PXD025622 | Pride

Succinylation profiles of brain injury after intracerebral hemorrhage

Protein posttranslational modifications (PTMs) has been shown to regulate biological processes of human diseases via expanding the genetic code and for regulating cellular pathophysiology, however, the system-wide changes at the PTMs levels in ICH brain remains little known. Given that succinylation...

ORGANISM(S): Mus musculus (Mouse)

2021-10-29 | PXD025621 | Pride

Intracerebral hemorrhage brain injury succinylation

Case Report: A Novel Truncating Variant of NR0B1 Presented With X-Linked Late-Onset Adrenal Hypoplasia Congenita With Hypogonadotropic Hypogonadism.

Not available

S-EPMC9243302 | biostudies-literature

Genome-wide Expression Profiles of Drought and High-salinity Stresses-responsive Genes in Rice (Oryza Sativa L. Indica)

Three rice major tissues, namely flag leaf, shoot and panicle, were involved in this study. Each tissue had two kinds stress treatment, drought and high salinity, in 3 different time courses. For drought treated samples, an additional water recovery was applied. Each experiment had three replicates....

ORGANISM(S): Oryza sativa

2010-06-05 | E-GEOD-6533 | biostudies-arrayexpress

[Novel PHEX gene mutations in patients with X-linked hypophosphatemic rickets: an analysis of 2 cases].

Not available

S-EPMC7389139 | biostudies-literature

Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells (bisulfite sequencing data)

DNA methylation of C5-cytosine (5mC) in the mammalian genome is a key epigenetic event that is critical for various cellular processes. However, how the genome-wide 5mC pattern is dynamically regulated remains a fundamental question in epigenetic biology. The TET family of 5mC hydroxylases, which co...

ORGANISM(S): Mus musculus

2011-04-21 | E-GEOD-28533 | biostudies-arrayexpress

Transcriptomic and metabolomic analyses reveal the differential accumulation of phenylpropanoids and terpenoids in hemp autotetraploid and its diploid progenitor

Background

Cannabis sativa, a dioecious plant that has been cultivated worldwide for thousands of years, is known for its secondary metabolites, especially cannabinoids, which possess several medicinal effects. In this study, we investigated the autopolyploidization effects on the biosynthes...

2023-09-21 | MTBLS6032 | MetaboLights

X-ray analysis of an RNA tetraplex (UGGGGU)(4) with divalent Sr(2+) ions at subatomic resolution (0.61 A).

Not available

S-EPMC61098 | biostudies-literature

Metal-organic nanostructures based on sono/chemo-nanodynamic synergy of Ti<sub>x</sub>O<sub>y</sub>/Ru reaction units: for ultrasound-induced dynamic cancer therapy.

Not available

S-EPMC12281788 | biostudies-literature

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