Description - OmicsDI

Show results for

Unknown (20952)
Transcriptomics (7029)
Genomics (4178)
Proteomics (1293)
Clinical (727)
Models (261)
Metabolomics (162)
Genomic (46)
Other (29)
Methylation profiling (15)
Multiomics (2)

Organisms

Homo sapiens (3360)
Mus musculus (2060)
Arabidopsis thaliana (636)
Rattus norvegicus (432)
Saccharomyces cerevisiae (283)
Caenorhabditis elegans (243)
Escherichia coli (80)
Xenopus laevis (24)
Bacillus subtilis (16)
Viridiplantae (11)
Macaca fascicularis (9)
Lactococcus lactis (9)
Mammalia (6)
Solanum tuberosum (6)
cellular organisms (5)
Eukaryota (3)
Nicotiana tabacum (3)
Murinae (2)
Embryophyta (2)
Clostridioides difficile 630 (1)
Alphainfluenzavirus (1)
Blattabacteriaceae (1)
1758 (1)
Ostreococcus tauri (1)
Mus sp. (1)
Komagataella pastoris (1)
Loligo forbesii (1)
unclassified eukaryotes (1)
Oryctolagus cuniculus (1)
Opisthokonta (1)

Organisms

Homo sapiens (585)
Mus musculus (217)
Saccharomyces cerevisiae (33)
Caenorhabditis elegans (31)
Rattus norvegicus (27)
Stutzerimonas stutzeri (23)
Thermus thermophilus HB8 (22)
marine metagenome (21)
Arabidopsis thaliana (20)
Drosophila melanogaster (17)
soil metagenome (15)
Klebsiella pneumoniae (12)
Escherichia coli (11)
Acinetobacter baumannii (11)
Danio rerio (11)
human gut metagenome (9)
Caudoviricetes (8)
sediment metagenome (8)
Citrus glauca (6)
Influenza A virus (6)
Mycobacterium tuberculosis (6)
Dickeya dianthicola (5)
Dickeya solani (5)
Macaca fascicularis (5)
Bos taurus (5)
Pseudomonas lalucatii (4)
Anguilla anguilla (4)
Citrus inodora (4)
Tursiops truncatus (4)
Stutzerimonas kunmingensis (4)

Repository

biostudies-arrayexpress (6953)
ENA (3486)
jPOST (608)
pride (515)
geo (460)
EGA (383)
BioModels (241)
MassIVE (151)
MetaboLights (102)
GNPS (55)
dbGaP (46)
iProX (15)
FAIRDOMHub (14)
GPMDB (6)
MetabolomicsWorkbench (5)
PeptideAtlas (4)
Cell Collective (3)
PMR (3)
EVA (2)
PAXDB (2)

Tissue

Cell culture (88)
Blood (65)
Brain (27)
B cell (19)
T cell (16)
Epithelial cell (15)
Leaf (14)
Whole body (14)
Liver (13)
Blood plasma (12)
Fibroblast (11)
Heart (11)
Permanent cell line cell (10)
Plant cell (9)
Bone marrow (8)
Blood serum (7)
Stem cell (7)
Embryo (6)
Hepatocyte (6)
Kidney (6)
Peripheral blood mononuclear cell (6)
Root (6)
Macrophage (5)
Neutrophil (5)
Lung (4)
Monocyte (4)
Blood (3)
Cultured cells (2)
Others (2)
Tumor tissue (1)

Disease

Normal (96)
Breast cancer (20)
Osteosarcoma (9)
Parkinson's disease (6)
Prostate cancer (6)
Adenocarcinoma (6)
Colorectal cancer (6)
Glioblastoma (6)
Reference (5)
Multiple myeloma (5)
Alzheimer's disease (4)
Acute lymphoblastic leukemia (4)
Chronic myelogenous leukemia (4)
None (4)
Hemophilia B (3)
Asthma (3)
Erythroleukemia (3)
Rheumatoid arthritis (3)
Pre-diabetic (3)
Cancer (3)
Pre diabetic (3)
Acute myeloid leukemia (3)
Inflammatory bowel disease (2)
Diabetes mellitus (2)
High grade glioblastoma (2)
Bladder carcinoma (2)
Myocardial infarction (2)
Hodgkin's lymphoma (1)
Mature T-cell and NK-cell lymphoma (1)
Human immunodeficiency virus infectious disease (1)

Technology Type

Mass Spectrometry (520)
Shotgun proteomics (295)
Top-down proteomics (75)
Bottom-up proteomics (69)
Mass spectrometry (67)
Data-dependent acquisition (40)
Affinity purification coupled with mass spectrometry proteomics (38)
Mass spectrometry assay (30)
Data-independent acquisition (22)
Gel-based experiment (15)
SWATH MS (12)
Chemical cross-linking coupled with mass spectrometry proteomics (9)
NMR spectroscopy (6)
HDMSE (6)
ESI (4)
SRM/MRM (4)
All-ion fragmentation (3)
Affinity proteomics (2)
DiaPASEF (2)
MSE (2)
Human Cardio Metabochip (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina Human Custom 1, Illumina Human-Ref-8 v3 beadchip, 2M and Human 610 Quad Custom arrays (1)
AB SOLiD 4 System (1)
Illumina MiSeq (1)
Illumina HiSeq 2000, ILLUMINA (1)
EI (1)
Glycoproteomics (1)
Mass spectrometry imaging (1)

Instrument Platform

418 [Affymetrix] (23)
Illumina NovaSeq 6000 (18)
NextSeq 500 (14)
Illumina HiSeq 2500 (14)
Illumina HiSeq 2000 (11)
ScanArray Express HT [PerkinElmer] (10)
Variable Atmosphere Incubator (9)
Agilent G2565AA and G2565BA Microarray Scanner (7)
GeneChip Scanner 3000 [Affymetrix] (7)
Spectronic Helios Alpha UV-Vis spectrophotometer (7)
Bioanalyser (7)
Microcentrifuge (6)
Affymetrix GeneChip(R) HT Scanner (6)
NanoDrop (6)
Scanning hardware (6)
Other (5)
GenePix 4000B [Axon Instruments] (5)
Ultracentrifuge (4)
Axon- GenePix4000B (4)
Illumina NovaSeq X (4)
Illumina HiSeq 4000 (4)
GeneQuant (3)
HP GeneArray [Affymetrix/HP] (3)
Chemostat (3)
Maxwell RSC Instrument (2)
Ultrospec 3000 (2)
Complete Genomics (2)
Axon GenePix 4000A scanning hardware (2)
Anaerobic workstation with airlock (2)
Nanodrop N1000 spectrophotometer (2)

Publication Date

2008 (2635)
2009 (1327)
2007 (760)
2024 (647)
2010 (500)
2013 (329)
2005 (315)
2011 (304)
2023 (254)
2022 (245)
2006 (239)
2012 (221)
2016 (194)
2025 (192)
2015 (173)
2014 (161)
2021 (118)
2020 (93)
2019 (87)
2026 (82)
2018 (74)
2017 (66)
2004 (65)
2003 (15)
2002 (5)

UNIPROT ID/AC

O15111 (8)
P25963 (8)
P01375 (7)
P19838 (7)
Q12933 (6)
P10646 (6)
P00742 (6)
P08709 (6)
P13726 (6)
Q04206 (6)
Q01201 (5)
P19438 (5)
P00747 (5)
Q9Y6K9 (5)
O14920 (5)
O43318 (5)
O14727 (5)
P55211 (5)
P42574 (5)
Q02750 (5)
Q13490 (4)
Q13489 (4)
Q15628 (4)
Q13546 (4)
P14780 (4)
P08254 (4)
P09341 (4)
Q9Y4K3 (4)
P99999 (4)
Q07812 (4)

ENSEMBL ID

ENSG00000100906 (3)
ENSG00000101017 (3)
ENSG00000112062 (2)
ENSG00000003402 (2)
ENSG00000171791 (2)
ENSG00000168036 (2)
ENSG00000149968 (2)
ENSG00000033327 (2)
ENSG00000100985 (2)
ENSG00000102908 (2)
ENSG00000118260 (2)
ENSG00000163739 (2)
ENSG00000120659 (2)
ENSG00000118503 (2)
ENSG00000175104 (2)
ENSG00000104432 (1)
ENSG00000168811 (1)
ENSG00000182866 (1)
ENSG00000125347 (1)
ENSG00000157368 (1)
ENSG00000169429 (1)
ENSG00000271503 (1)
ENSG00000106366 (1)
ENSG00000144566 (1)
ENSG00000044574 (1)
ENSG00000105664 (1)
ENSG00000137710 (1)
ENSG00000105974 (1)
ENSG00000006062 (1)
ENSG00000134308 (1)

CHEBI ID

CHEBI:15422 (52)
CHEBI:16761 (52)
CHEBI:15846 (48)
CHEBI:16526 (47)
CHEBI:16027 (47)
CHEBI:16474 (46)
CHEBI:17992 (45)
CHEBI:17895 (45)
CHEBI:15721 (44)
CHEBI:17659 (44)
CHEBI:15379 (43)
CHEBI:17363 (42)
CHEBI:16238 (42)
CHEBI:16908 (41)
CHEBI:16108 (41)
CHEBI:18367 (39)
CHEBI:15713 (38)
CHEBI:15377 (38)
CHEBI:29052 (38)
CHEBI:16332 (38)
CHEBI:18009 (38)
CHEBI:15343 (38)
CHEBI:15351 (37)
CHEBI:15346 (37)
CHEBI:16236 (37)
CHEBI:16001 (37)
CHEBI:18021 (37)
CHEBI:16134 (37)
CHEBI:17306 (36)
CHEBI:15380 (36)

Metabolite Name

Taurine (14)
Hypoxanthine (13)
Adenosine (12)
Xanthine (12)
Creatinine (12)
Citrulline (11)
Glutamine (10)
Guanosine (10)
Creatine (10)
Inosine (10)
Uracil (9)
Kynurenic acid (9)
Citric acid (9)
Malic acid (9)
Histamine (9)
Guanine (9)
Adenine (9)
Leucine (8)
Glycine (8)
Thymine (8)
Serotonin (8)
Choline (8)
Cytosine (8)
Riboflavin (8)
Phenylalanine (8)
L-Tryptophan (8)
Isoleucine (8)
Azelaic acid (8)
L-Carnitine (8)
L-Leucine (8)

First Public Date

2019 (396)
2020 (360)
2026 (318)
2014 (306)
2022 (289)
2023 (288)
2024 (263)
2025 (255)
2021 (251)
2013 (224)
2017 (175)
2018 (171)
2015 (90)
2016 (85)
2012 (9)
2011 (5)
2010 (1)

Modelling Approach

Ordinary differential equation model (135)
Constraint-based model (11)
Logical model (10)
Petri net (9)
Boolean model (3)
Differential equation model (3)
Finite element spatial model (2)
Rule-based model (1)
Steady-state model (1)
Physiologically based pharmacokinetic model (1)
Delayed differential equation model (1)
Other (1)
Partial differential equation model (1)

Study status

Completed (263)
Recruiting (229)
Active, not recruiting (69)
Not yet recruiting (58)
Not provided (50)
Terminated (39)
Withdrawn (11)
Enrolling by invitation (8)

Lab affiliation

Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States (60)
Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China (4)
Agronomy College, Henan Agricultural University, China (3)
Head of Department Department of Molecular Mechanisms of Disease University of Zurich Winterthurerstr. 190 8057 Zurich, Switzerland (3)
Institute of Organic Chemistry and Biochemistry of the CAS (3)
Shenzhen People’s Hospital (3)
University at buffalo, SUNY (3)
Cambridge Institute for Medical Research, University of Cambridge (2)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (2)
Chemical and Biological Engineering, Hong Kong University of Science and Technology (HKUST) (2)
Children’s Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead, NSW 2145, Australia (2)
College of Horticulture, Northwest A&F University (2)
Colorado State University (2)
Departamento de Medicina Animal, Hospital Clínico Veterinario Universidad de Extremadura Avd de la Universidad s/n 10003 Cáceres SPAIN (2)
Department Ecotoxicogenomics, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Schmallenberg. (2)
Department of Endocrinology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China. (2)
Department of Microbial Physiology and Molecular Biology, Institute of Microbiology, University of Greifswald (2)
Department of Molecular Mechanisms of Disease University of Zurich Winterthurerstr. 190 8057 Zurich, Switzerland (2)
EDyP (2)
Friedrich Schiller University Jena (2)
Huazhong Agricultural University (2)
Institute for Cancer Research, Shenzhen Bay Laboratory, China. (2)
Institute of Animal Husbandry and Veterinary Sciences, Zhejiang Academy of Agricultural Sciences (2)
MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK (2)
Mass Spectrometry Facility, Max Perutz Labs, University of Vienna, Vienna BioCenter, Dr. Bohr-Gasse 9, 1030 Vienna, Austria (2)
Max Planck Institute of Biochemistry (2)
Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK (2)
Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK. (2)
Proteomic Mass Spectrometry, Wellcome Trust Sanger Institute, United Kingdom (2)
Proteomics facility, Central Science Laboratory, University of Tasmania (2)

Keyword

Fluorouracil (42)
Oxaliplatin (41)
Leucovorin (37)
Irinotecan (33)
Bevacizumab (32)
Cetuximab (31)
Pembrolizumab (26)
Colonoscopy (26)
Nivolumab (20)
Levoleucovorin (20)
Colorectal (19)
Panitumumab (16)
Capecitabine (16)
Metastatic (15)
Screening (13)
Chemotherapy (11)
Trifluridine (10)
Rectal cancer (10)
Durvalumab (9)
Exercise (9)
Immunotherapy (9)
Calcium (9)
Paclitaxel (8)
CRC (8)
PD-1 (7)
Trastuzumab (7)
Memorial Sloan Kettering Cancer Center (6)
MCRC (6)
Calcium, Dietary (6)
Folic Acid (6)

IsPrivate

False (241)

Model Flag

Non Kinetic (69)
Sbml Extended (2)

Submitter Keywords

Not Peer Reviewed (4)
FROG (3)
Machine Learning Model (1)
Immuno-oncology (1)

Classification

bacteria (147)
viruses (92)
fungi (5)
protozoa (5)
helminths (1)

Modification

Not available (3)
+3amu) (1)
2x(15)N labeled L-lysine (1)
4 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (5938)
ChIP-seq (219)
RNA-seq of coding RNA (157)
Comparative genomic hybridization by array (101)
RNAi profiling by array (99)
ChIP-chip by array (72)
ChIP-chip by tiling array (60)
Genotyping by array (50)
Unknown experiment type (47)
Other (28)
RNA-seq of non coding RNA (23)
Transcription profiling by tiling array (22)
Methylation profiling by array (15)
Methylation profiling by high throughput sequencing (14)
MicroRNA profiling by array (13)
RNA-seq of coding RNA from single cells (12)
DNA-seq (10)
Transcription profiling by SAGE (5)
Animal - One-color microarray (3)
RNA-seq of total RNA (3)
Translation profiling (2)
High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
Transcription profiling by RT-PCR (2)
MicroRNA profiling by high throughput sequencing (2)
ChIP-chip by SNP array (1)
Animal - Two-color microarray (1)
RNA-seq of non coding RNA from single cells (1)
RIP-chip by array (1)
One-color microarray (1)

Release Date

2008 (2780)
2022 (2531)
2023 (2211)
2021 (2188)
2020 (1774)
2025 (1674)
2024 (1626)
2009 (1529)
2019 (1396)
2018 (1268)
2017 (1076)
2016 (1049)
2015 (900)
2007 (874)
2013 (870)
2014 (837)
2010 (795)
2011 (674)
2012 (642)
2005 (350)
2006 (348)
2026 (212)
2004 (107)
2003 (71)
2002 (40)
2001 (27)
2000 (26)
1999 (15)
1998 (11)
1997 (3)

Location

United States (302)
United Kingdom (106)
Spain (94)
France (84)
Italy (77)
China (67)
Canada (67)
Germany (65)
South Korea (63)
Australia (63)
Belgium (54)
Japan (51)
Netherlands (49)
Iran (47)
Denmark (34)
Taiwan (33)
Poland (30)
Sweden (26)
Russia (26)
Turkey (23)
Norway (22)
Austria (21)
Brazil (20)
Israel (19)
Czechia (19)
Hungary (19)
Switzerland (19)
Argentina (15)
Hong Kong (13)
Portugal (12)

Previous page
1 / 3474
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 3474
Next page

Sort by:

Relevance

Page size

Mycobacterium bovis description isolates

PRJEB33598 | ENA

Description of Labrys sp. nov

PRJEB28654 | ENA

Description of ST410 Escherichia coli

PRJEB9568 | ENA

Fungal planet description sheets - Dec 2020

PRJEB40541 | ENA

Description of Acetobacter zythi sp. nov.

PRJEB71648 | ENA

Mulberry Cultivation for Saline-Alkali Land Amelioration: Metagenomic and Metabolomic Perspectives on Soil Biogeochemistry and Leaf Metabolic Profiling

We conducted field trials combined with metabolomic sequencing to evaluate the saline-alkali soil remediation efficiency of mulberry trees, as well as the metabolic responses of mulberry leaves under saline-alkali stress.

2026-08-06 | MTBLS15262 | MetaboLights

description of a novel Bradyrhizobium sp RP6T

PRJEB29857 | ENA

Untargeted Metabolomics of Mouse Platelet Pellets by LC-MS/MS

In this study, platelet pellets were isolated from mouse peripheral blood through gradient centrifugation to obtain high-purity platelet samples. Liquid chromatography-tandem mass spectrometry (LC-MS/MS)-based untargeted metabolomics was performed to comprehensively profile the global metabolic chan...

2026-08-04 | MTBLS15244 | MetaboLights

Description of a novel endophytic bacterium Micromonospora chitinolyticus RP3T

PRJEB30380 | ENA

Description of a new species of Longisorus from Serbia

PRJEB32454 | ENA

Previous page
1 / 3474
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 3474
Next page

Sort by:

Relevance

Page size

34733 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Study status

Lab affiliation

Tags

Keyword

IsPrivate

Model Flag

Submitter Keywords

Classification

Modification

Study type

Release Date

Location

OmicsDI is part of the ELIXIR infrastructure

Tweets