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TranscriptomicsEvidence-based annotation of genes and transcripts in Desulfovibrio vulgaris Hildenborough (RNA-Seq)
5' RNASeq of mRNA from DvH in defined lactate/sulfate media (LS4D) One lane of sequence each for two different protocols applied to independently grown cells under similar conditions
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2011-05-27 | E-GEOD-29559 | biostudies-arrayexpress
TranscriptomicsHaploinsufficiency profiling by array of yeast heterozygous transposon disruption mutants grown in the presence of different synthetic compounds
A pool of 3633 tagged heterozygous transposon disruption mutants underwent haploinsufficiency profiling in the presence of different synthetic compounds to identify their cellular targets
ORGANISM(S): Saccharomyces cerevisiae 
2011-09-30 | E-MTAB-398 | biostudies-arrayexpress
TranscriptomicsStrain abundance assay of 3633 Candida albicans heterozygous transposon disruption mutants grown in YPD, SC, YNB or SLAD media
A pool of 3633 tagged heterozygous transposon disruption mutants underwent haploinsufficiency profiling in different media conditions (YPD, SC, YNB, and SLAD) to identify slow growing strains in these conditions.
ORGANISM(S): Candida albicans 
2011-09-30 | E-TABM-1080 | biostudies-arrayexpress
TranscriptomicsIdentification of transcript starts in Desulfovibrio alaskensis G20
5' RNASeq of mRNA from G20 in defined lactate/sulfate media (LS4D) 5' RNASeq of a single sample
ORGANISM(S): Desulfovibrio alaskensis G20 
2013-08-03 | E-GEOD-49484 | biostudies-arrayexpress
TranscriptomicsComparative transcriptional analysis of Desulfovibrio alaskensis G20, a choline utilization regulator and LysX
Expression data for Desulfovibrio alaskensis strain G20 and mutants in regulator proteins grown on lactate sulfate media and then pelleted and transferred to another media when they reached stationary phase. The Choline mutant was transferred to lacte/sulfate minimal media and choline/sulfate minima...
ORGANISM(S): Desulfovibrio alaskensis G20 
2013-08-03 | E-GEOD-49528 | biostudies-arrayexpress
TranscriptomicsTranscript map of Shewanella oneidensis MR-1
High-resolution tiling analysis of the MR-1 transcriptome in defined lactate minimal medium One slide hybridized to mRNA and one “genomic control” array hybridized to genomic DNA
ORGANISM(S): Shewanella oneidensis MR-1 
2012-07-18 | E-GEOD-39468 | biostudies-arrayexpress
TranscriptomicsTranscript structures in Shewanella oneidensis MR-1
5' RNA-Seq of mRNA from S. oneidensis MR-1 grown aerobically in defined lactate medium One lane of sequence for a 5' RNASeq library from RNA treated with exonuclease to remove degraded transcripts, with single-end 40-nt reads
ORGANISM(S): Shewanella oneidensis MR-1 
2012-07-18 | E-GEOD-39474 | biostudies-arrayexpress
TranscriptomicsTranscript map of Shewanella oneidensis MR-1
High-resolution tiling analysis of the MR-1 transcriptome under diverse growth conditions The conditions include aerobic growth in Luria-Bertani broth (LB), aerobic growth in defined lactate minimal medium, anaerobic growth in defined lactate minimal medium with 20mM dimethyl sulfoxide as the elect...
ORGANISM(S): Shewanella oneidensis MR-1 
2013-03-18 | E-GEOD-45217 | biostudies-arrayexpress
TranscriptomicsdRNA-seq of Shewanella oneidensis MR-1
We combined high-resolution tiling microarrays and 5'-end RNA sequencing to obtain a genome-wide map of transcription start sites (TSSs) for Shewanella oneidensis MR-1. To test the reliability of these TSSs, we compared our result to those from differential RNA sequencing (dRNA-seq), which discrimin...
ORGANISM(S): Shewanella oneidensis MR-1 
2014-06-12 | E-GEOD-58292 | biostudies-arrayexpress
TranscriptomicsEvidence-based annotation of genes and transcripts in Desulfovibrio vulgaris Hildenborough (tiling array)
High-resolution tiling analysis of the DvH transcriptome in lactate/sulfate media, both rich (LS) and defined (LS4D) Two replicates of rich media, one replicate of minimal media, and one “genomic control” array (genomic_control.ftr) hybridized to genomic DNA
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2011-05-27 | E-GEOD-29556 | biostudies-arrayexpress
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