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MetabolomicsA microfluidics-based in vitro model of the gastrointestinal human-microbe interface
Changes in the human gastrointestinal microbiome are associated with several diseases. To infer causality, experiments in representative models are essential, but widely used animal models exhibit limitations. Here we present a modular, microfluidics-based model (HuMiX, human–microbial crosstalk), w...
2017-07-28 | MTBLS328 | MetaboLights
UnknownMicrobial communities and biomineralization potential within mountain permafrost of the Devaux ice cave in the Central Pyrenees.
Not available
S-EPMC12905384 | biostudies-literature
TranscriptomicsTma108, a putative M1 aminopeptidase, is involved in ribosome specialization in Saccharomyces cerevisiae
We performed RIP (RNA-IP experiments) in the yeast Saccharomyces cerevisiae, immunoprecipitating either Tma108, Scp160, Tma46 or Rpl16. The RNAs present in the IPs were analyzed by microarray competitive hybridization against total RNAs (Input). Our goal was to identify the RNAs which are targeted,...
ORGANISM(S): Saccharomyces cerevisiae 
2015-12-24 | E-MTAB-3881 | biostudies-arrayexpress
TranscriptomicsTma108, a putative M1 aminopeptidase, is involved in ribosome specialization in Saccharomyces cerevisiae
We performed subcellular fractionation of the polysomes associated with the mitochondrial surface (mitopolysomes) in wild type or Tma108 deleted yeast strains and measured the mRNA enrichment in these fractions by competitive hybridization on microarrays against the corresponding total RNAs. This wa...
ORGANISM(S): Saccharomyces cerevisiae 
2015-12-24 | E-MTAB-3922 | biostudies-arrayexpress
TranscriptomicsSelenite treatment of a Saccharomyces cerevisiae wild type strain.
In the frame of a multispecies project, Saccharomyces cerevisiae cells were treated with 10 mM sodium selenite. Cells were collected 10, 20, 30, 40, 50, 60, 70 and 80 minutes after the treatment and their transcriptomes were compared to those of mock-treated cultures. Four independent biological rep...
ORGANISM(S): Saccharomyces cerevisiae 
2018-11-12 | E-MTAB-7022 | biostudies-arrayexpress
TranscriptomicsSelenite treatment of a Lachancea thermotolerans wild type strain
In the frame of a multispecies project, Lachancea thermotolerans cells were treated with 5 mM sodium selenite. Cells were collected 10, 20, 30, 40, 50, 60, 70 and 80 minutes after the treatment and their transcriptomes were compared to those of mock-treated cultures. Four independent biological repl...
ORGANISM(S): Lachancea thermotolerans 
2018-11-12 | E-MTAB-7045 | biostudies-arrayexpress
TranscriptomicsSelenite treatment of a Lachancea kluyveri wild type strain
In the frame of a multispecies project, Lachancea kluyveri cells were treated with 5 mM sodium selenite. Cells were collected 10, 20, 30, 40, 50, 60, 70 and 80 minutes after the treatment and their transcriptomes were compared to those of mock-treated cultures. Four independent biological replicates...
ORGANISM(S): Lachancea kluyveri 
2018-11-12 | E-MTAB-7046 | biostudies-arrayexpress
TranscriptomicsSelenite treatment of a Candida albicans wild type strain
In the frame of a multispecies project, Candida albicans cells were treated with 0.5 mM sodium selenite. Cells were collected 10, 20, 30, 40, 50, 60, 70 and 80 minutes after the treatment and their transcriptomes were compared to those of mock-treated cultures. Four independent biological replicates...
ORGANISM(S): Candida albicans 
2018-11-12 | E-MTAB-7053 | biostudies-arrayexpress
TranscriptomicsSelenite treatment of a Kluyveromyces lactis wild type strain
In the frame of a multispecies project, Kluyveromyces lactis cells were treated with 0.5 mM sodium selenite. Cells were collected 10, 20, 30, 40, 50, 60, 70 and 80 minutes after the treatment and their transcriptomes were compared to those of mock-treated cultures. Four independent biological replic...
ORGANISM(S): Kluyveromyces lactis 
2018-11-12 | E-MTAB-7047 | biostudies-arrayexpress
TranscriptomicsSelenite treatment of a Yarrowia lipolytica wild type strain
In the frame of a multispecies project, Yarrowia lipolytica cells were treated with 10 mM sodium selenite. Cells were collected 10, 20, 30, 40, 50, 60, 70 and 80 minutes after the treatment and their transcriptomes were compared to those of mock-treated cultures. Four independent biological replicat...
ORGANISM(S): Yarrowia lipolytica 
2018-11-12 | E-MTAB-7044 | biostudies-arrayexpress
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