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TranscriptomicsTranscriptome of transition from primary to secondary stem development in Populus
The terminal region of the developing shoot provides a steep developmental gradient from primary to secondary growth that facilitates identification of the genes that play specialized functions during each of these phases of growth Keywords: Developmental series Stem internodes excluding the nodes ...
ORGANISM(S): Populus trichocarpa 
2009-01-30 | E-GEOD-13043 | biostudies-arrayexpress
TranscriptomicsHigh resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1
Abiotic stress is a major factor affecting the growth, development, yield and quality in plants including the important biomass yield such as in a bioenergy feedstock crops. In a first of its kind, RNA-seq based high resolution survey of abiotic stress-induced transcriptome of bioenergy feedstock mo...
ORGANISM(S): Populus trichocarpa 
2018-02-23 | E-MTAB-5540 | biostudies-arrayexpress
TranscriptomicsPoplar tissue types 1
Global gene expression pattern of different poplar tissue types were determined using a Nimblegen microarray based on JGI v1.1 gene models. All tissue except reproductive tissue were obtained from the same clone used for the poplar genome sequencing project (Populus trichocarpa Nisqually-1). Reprodu...
ORGANISM(S): Populus trichocarpa 
2010-08-01 | E-GEOD-21481 | biostudies-arrayexpress
TranscriptomicsPoplar tissue types 2
Global gene expression pattern of phloem and xylem tissue were determined using a Nimblegen microarray based on JGI v1.1 gene models. Xylem tissue from both Populus trichocarpa Nisqually-1 and Populus tremula X Populus alba hybrid were used in the study. Xylem tissue: Three biological replicates we...
ORGANISM(S): Populus trichocarpa 
2010-08-01 | E-GEOD-21485 | biostudies-arrayexpress
TranscriptomicsExtensive transcriptome changes during vegetative bud dormancy in Populus
We investigated differential gene expression patterns in Populus vegetative buds between paradormant, endodormant, and ecodormant dormancy states. Our primary objectives were to (1) identify which individual genes, biological processes, molecular functions, and regulatory pathways were differentiall...
ORGANISM(S): Populus trichocarpa 
2015-06-26 | E-GEOD-70260 | biostudies-arrayexpress
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