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MetabolomicsGrazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi
Diatoms and copepods are main actors in marine food webs. The prey-predator interactions between them affect bloom dynamics, shape marine ecosystems and impact the energy transfer to higher trophic levels. Recently it has been demonstrated that the presence of grazers may affect the diatom prey beyo...
2018-10-23 | MTBLS571 | MetaboLights
MetabolomicsA metabolomics exploration of the sexual phase in the marine diatom Pseudo-nitzschia multistriata
Pseudo-nitzschia multistriata is a planktonic diatom species with a diplontic life cycle comprising a short sexual phase during which gametes are produced from the encounter of two diploid cells of opposite mating type (MT). Gene expression studies have highlighted the presence of substantial change...
2020-06-29 | MTBLS1714 | MetaboLights
MetabolomicsResource Partitioning of Diatom Metabolites that Support Bacterial Heterotrophy in the Ocean (UPLC-MS assay)

The communities of marine bacteria that assemble around living microphytoplankton are predictably dominated by three taxonomic groups, each of which specializes in different components of the available metabolite pool: Rhodobacterales transport small and polar metabolites, Flavobacteriia use carb...

2020-09-15 | MTBLS1751 | MetaboLights
MetabolomicsSea-ice diatom compatible solute shifts
Not available
ORGANISM(S): Nitzschia lecointei 
ST001393 | MetabolomicsWorkbench
MetabolomicsResource Partitioning of Diatom Metabolites that Support Bacterial Heterotrophy in the Ocean (NMR assay)

The communities of marine bacteria that assemble around living microphytoplankton are predictably dominated by three taxonomic groups, each of which specializes in the use or transport of different components of the available metabolite pool: Rhodobacterales transport small and polar metabolites,...

2020-09-15 | MTBLS1544 | MetaboLights
MetabolomicsGrowth-stage related diatom-bacteria interactions
Not available
ORGANISM(S): Thalassiosira pseudonana 
ST001944 | MetabolomicsWorkbench
Genomicsbenthic diatom metabarcoding
benthic diatom metabarcoding
PRJNA421862 | ENA
ProteomicsAn algicidal bacterium shapes the microbiome during outdoor diatom cultivation collapse
Proteomic measurements for samples from 5 outdoor algal ponds over a time series; ponds were sampled during the fall of 2015. Samples were digested with trypsin, then analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS processing pipeline against FASTA files compiled from ponds sequ...
ORGANISM(S): Phaeodactylum Tricornutum (ncbitaxon:2850) Nannochloropsis Salina (ncbitaxon:5749) 
2024-06-04 | MSV000094933 | MassIVE
TranscriptomicsTranscriptional response of the marine pennate diatom Phaeodactylum tricornutum to Fe limitation
Diatoms, which are responsible for up to 40% of the 45 to 50 billion metric tons of organic carbon production each year in the sea, are particularly sensitive to Fe stress. Here we describe the transcriptional response of the pennate diatom Phaeodactylum tricornutum to Fe limitation using a partial ...
ORGANISM(S): Phaeodactylum tricornutum 
2010-05-27 | E-GEOD-8675 | biostudies-arrayexpress
TranscriptomicsDiatom transcriptomics under nitrate limitation
Here, we examined the ramifications of between-species diversity by documenting the transcriptional response of three marine diatoms - Thalassiosira pseudonana, Fragilariopsis cylindrus, and Pseudo-nitzschia multiseries - to the onset of nitrate limitation of growth, a common limiting nutrient in th...
ORGANISM(S): Thalassiosira pseudonana 
2014-03-25 | E-GEOD-56132 | biostudies-arrayexpress
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