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ProteomicsDifferentially abundant proteins associated with heterosis in the primary roots of popcorn
Although heterosis has significantly contributed to increases in worldwide crop production, the molecular mechanisms regulating this phenomenon are still unknown. In the present study, we used a comparative proteomic approach to explore hybrid vigor via the proteome of both the popcorn L54 ♀ and P8 ...
ORGANISM(S): Zea mays (Maize) 
2018-05-17 | PXD009436 | Pride
Nano-lc-esi-ms/ms Progenesis Synapt g2 si Heterosis Popcorn Non-additive effect Shotgun proteomics 
TranscriptomicsProfiling the transcriptional response upon deletion of PUN1
Yeast filamentous growth is a stress response to conditions of nitrogen deprivation, wherein yeast colonies form pseudohyphal filaments of elongated and connected cells. As proteins mediating adhesion and transport are required for this growth transition, the protein complement at the yeast cell pe...
ORGANISM(S): Saccharomyces cerevisiae 
2010-02-17 | E-GEOD-20351 | biostudies-arrayexpress
UnknownEntamoeba histolytica: Quantitative Proteomics Analysis Reveals Putative Virulence-Associated Differentially Abundant Membrane Proteins.
Not available
S-EPMC6283474 | biostudies-literature
ProteomicsComparative Proteomic Analysis of the Mycobacterium tuberculosis Lineage 7 Reveals Differentially Abundant Proteins Linked to Slow Growth
Differentially abundant proteins were quantified in the slowly growing Mycobacterium tuberculosis (M. tuberculosis) lineage 7 strains and the M. tuberculosis lineage 4 reference strain H37Rv. Mass spectrometry based proteomic analysis was employed to identify, quantitate and compare the protein pro...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2017-05-24 | PXD006117 | Pride
Proteomics Mycobacterium tuberculosis Tuberculosis Lineage 7 Mass spectrometry Ethiopia Type 7 secretion 
ProteomicsImproved detection of differentially abundant proteins through FDR-control of peptide-identity-propagation
We present a method for FDR control of PIP, called “PIP-ECHO” (PIP Error Control via Hybrid cOmpetition) and devise a rigorous protocol for evaluating FDR control of any PIP method. Using three different datasets, we evaluate PIP-ECHO alongside the PIP procedures implemented by FlashLFQ, IonQuant, a...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2025-10-06 | PXD057758 | Pride
Mbr E. coli Human Lfq Quantification Pip 
ProteomicsIdentify differentially abundant proteins between control and Exosc10 cKO ovaries
Exosc10 cKO female mice are infertile. To identify the differentially abundant proteins between control and Exosc10 ovaries, we performed proteomics in around P25 control and Exosc10 cKO ovaries.
ORGANISM(S): Mus musculus (Mouse) 
2026-01-22 | PXD063134 | Pride
Mouse ovary 
UnknownDifferentially abundant proteins associated with heterosis in the primary roots of popcorn.
Not available
S-EPMC5951555 | biostudies-literature
UnknownProteomics-Based Identification of Differentially Abundant Proteins from Human Keratinocytes Exposed to Arsenic Trioxide.
Not available
S-EPMC4240501 | biostudies-literature
ProteomicsIntegrating physiological and proteomics signatures for understanding drought, salinity and alkalinity stress tolerance mechansisms in lentil
Abiotic stresses—such as drought, salinity, and alkalinity severely limit global lentil production by impairing physiological processes including osmolytes accumulation, chlorophyll synthesis, H2O2 production and antioxidant activities. However, no proteomic signature studies have dissected the mole...
ORGANISM(S): Lens culinaris 
2026-06-15 | PXD078023 | Pride
Proteomics Abiotic stress Differentially abundant proteins Lentil Regulatory mechanisms 
UnknownA profile of differentially abundant proteins at the yeast cell periphery during pseudohyphal growth.
Not available
S-EPMC2865295 | biostudies-literature
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