Digestion - OmicsDI

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UNIPROT ID/AC

A0A0J7KDN7_LASNI (3)
A0A0J7KNB9_LASNI (3)
A0A0J7KVJ8_LASNI (3)
A0A0J7NH77_LASNI (3)
A0A0J7KJE1_LASNI (3)
A0A0J7NUN8_LASNI (3)
A0A0J7L0Y5_LASNI (3)
A0A0J7K9T4_LASNI (3)
A0A0J7KDI5_LASNI (3)
A0A0J7L9L8_LASNI (3)
A0A0J7N1L3_LASNI (3)
A0A0J7KSB6_LASNI (3)
A0A0J7L4B6_LASNI (3)
A0A0J7KLQ4_LASNI (3)
A0A0J7LAE1_LASNI (3)
A0A0J7P5L4_LASNI (3)
A0A0J7KYH5_LASNI (3)
A0A0J7L9G5_LASNI (3)
A0A0J7NS31_LASNI (3)
A0A0J7KZ38_LASNI (3)
A0A0J7K615_LASNI (3)
A0A0J7KJE2_LASNI (3)
A0A0J7KZU0_LASNI (3)
A0A0J7L1K1_LASNI (3)
A0A0J7KX82_LASNI (3)
A0A0J7KVE5_LASNI (3)
A0A0J7KQQ3_LASNI (3)
A0A0J7L542_LASNI (3)
A0A0J7KJT5_LASNI (3)
A0A0J7KUN9_LASNI (3)

ENSEMBL ID

ENSG00000170477 (32)
ENSG00000147251 (16)
ENSG00000247315 (8)
ENSG00000204131 (6)
ENSMUSP00000141097 (3)
ENSMUSG00000098557 (2)
ENSMUSP00000140201 (1)
ENSMUSP00000141542 (1)
ENSMUSG00000090272 (1)
ENSMUSP00000141637 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000021039 (1)
ENSMUSG00000072849 (1)

CHEBI ID

CHEBI:28635 (8)
CHEBI:52742 (1)
CHEBI:9254 (1)
CHEBI:30924 (1)
CHEBI:358 (1)
CHEBI:11018 (1)
CHEBI:45866 (1)
CHEBI:10961 (1)
CHEBI:18710 (1)
CHEBI:35397 (1)
CHEBI:15193 (1)
CHEBI:15671 (1)
CHEBI:26849 (1)
CHEBI:18711 (1)
CHEBI:35398 (1)
CHEBI:43896 (1)
CHEBI:62010 (1)
CHEBI:73803 (1)
CHEBI:11835 (1)
CHEBI:17871 (1)
CHEBI:20078 (1)
CHEBI:1552 (1)
CHEBI:34008 (1)
CHEBI:138881 (1)
CHEBI:73804 (1)
CHEBI:10245 (1)
CHEBI:42748 (1)
CHEBI:22389 (1)
CHEBI:12321 (1)
CHEBI:48622 (1)

Metabolite Name

Adenosine (17)
Uridine (16)
Betaine (15)
Creatine (15)
Uracil (14)
Cytosine (14)
Hypoxanthine (14)
Adenine (14)
L-Phenylalanine (14)
1-methyladenosine (13)
Guanine (13)
Choline (13)
Thymine (12)
Sphinganine (12)
L-Proline (12)
Taurine (12)
L-Arginine (12)
Cytidine (12)
Guanosine (12)
Inosine (12)
L-Tyrosine (11)
Niacinamide (11)
L-Histidine (11)
L-Glutamine (11)
Xanthine (11)
Histamine (10)
Glycerophosphocholine (10)
Creatinine (10)
L-Leucine (10)
Uric acid (10)

First Public Date

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2018 (242)
2020 (235)
2017 (176)
2016 (116)
2013 (110)
2015 (102)
2012 (2)

Modelling Approach

Metabolic network (1)
Constraint-based model (1)

Study status

Not provided (1)
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Completed (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (96)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (71)
EDyP (50)
University of Edinburgh (47)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (46)
Head of the Curie Institute Mass Spectrometry Platform (34)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (34)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (33)
Wageningen University (27)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (27)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (26)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (26)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (24)
University of Victoria (24)
The University of Melbourne (24)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (22)
Head of Proteomics (22)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (21)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (20)
Utrecht University (20)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (19)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (19)
University of Washington (18)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (17)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (17)
Moffitt Cancer Center Tampa, FL, USA (16)
Wellcome Trust Sanger Institute (16)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (15)
Imperial College London (15)
IRCCS Istituto G Gaslini (15)

Keyword

Gynecological malignancies (1)
Bowel activity (1)
Gum chewing (1)
Dd (1)
TUMOR MARKER (1)
PROGASTRIN (1)
Postoperative (1)
Post Menopausal Estrogens (1)
Fecal Microbes (1)
Intestinal microbiota transplantation (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Classification

bacteria (28)
protozoa (14)
fungi (7)
viruses (6)

Modification

4x(15)N labeled L-arginine (52)
2x(15)N labeled L-lysine (49)
4-tetrahydrothiazine-3-carboxylic acid (38)
N6 (37)
57.021464 (30)
15.994915 (29)
N6-dimethyl-L-lysine (28)
Not available (27)
42.010565 (14)
-17.026549 (13)
-18.010565 (8)
57.02146 (8)
15.99491 (8)
+3amu) (7)
4x(2)H labeled dimethylated residue (5)
79.966331 (4)
71.037114 (4)
0.984 (4)
4x(2)H labeled dimethylated L-lysine (4)
6x(2)H labeled dimethylated L-arginine (3)
4 (3)
Heavy form - site K (2)
43.00581 (2)
0.984016 (2)
4'-dihydroxyphenylalanine (2)
3x(2)H labeled N6-acetyl-L-lysine (2)
6-dioxaoctanediamine derivatized cysteine (2)
58.005479 (2)
42.01056 (2)
3.994915 (1)

Study type

Transcription profiling by array (5912)
RNA-seq of coding RNA (1900)
ChIP-seq (581)
Comparative genomic hybridization by array (224)
RNA-seq of coding RNA from single cells (197)
Other (173)
Methylation profiling by array (166)
ChIP-chip by tiling array (136)
Transcription profiling by tiling array (128)
RNA-seq of non coding RNA (109)
Methylation profiling by high throughput sequencing (106)
RNA-seq of total RNA (88)
Unknown experiment type (57)
DNA-seq (51)
Animal - High-throughput sequencing (47)
ChIP-chip by array (44)
Cell line - High-throughput sequencing (38)
Transcription profiling by RT-PCR (37)
High-throughput sequencing (34)
Genotyping by array (34)
CUT&RUN (26)
RIP-seq (23)
MNase-seq (19)
Plant - High-throughput sequencing (18)
CLIP-seq (18)
Ribo-seq (18)
MicroRNA profiling by array (17)
Human - High-throughput sequencing (12)
4C (11)
Hi-C (11)

Release Date

2014 (1640)
2022 (1547)
2013 (1484)
2023 (1421)
2015 (1414)
2012 (1355)
2021 (1350)
2010 (1335)
2025 (1275)
2020 (1202)
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2018 (789)
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2007 (253)
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2005 (170)
2006 (153)
2004 (66)
2003 (53)
2002 (30)
2000 (29)
2001 (28)
1999 (24)
1998 (19)
1997 (4)

Location

Turkey (1)
United Kingdom (1)
France (1)
United States (1)

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Inhibition of anaerobic digestion by various ammonia sources resulted in subtle differences in metabolite dynamics

The impact of ammonia on anaerobic digestion performance and microbial dynamics has been extensively studied, but the concurrent effect of anions brought by ammonium salt should not be neglected. This paper studied this effect using metabolomics and a time-course statistical framework. Metabolomi...

2024-03-01 | MTBLS7859 | MetaboLights

Genetic and chemical validation of Plasmodium falciparum aminopeptidase PfA-M17 as a drug target in the hemoglobin digestion pathway (Part 1)

Not available

ORGANISM(S): Plasmodium falciparum

ST002106 | MetabolomicsWorkbench

Genetic and chemical validation of Plasmodium falciparum aminopeptidase PfA-M17 as a drug target in the hemoglobin digestion pathway (Part 3)

Not available

ORGANISM(S): Plasmodium falciparum

ST002108 | MetabolomicsWorkbench

Genetic and chemical validation of Plasmodium falciparum aminopeptidase PfA-M17 as a drug target in the hemoglobin digestion pathway (Part 2)

Not available

ORGANISM(S): Plasmodium falciparum

ST002107 | MetabolomicsWorkbench

MNase digestion-sensitive nucleosomes in Saccharomyces cerevisiae

The structural complexity of nucleosomes underlies their functional versatility. Here we report a new type of complexity – nucleosome fragility, manifested as high sensitivity to micrococcal nuclease, in contrast to the common presumption that nucleosomes are similar in resistance to MNase digestio...

ORGANISM(S): Saccharomyces cerevisiae

2011-01-24 | E-GEOD-26412 | biostudies-arrayexpress

anaerobic digestion

PRJNA1068322 | ENA

anaerobic digestion

anaerobic digestion Metagenome

PRJNA413634 | ENA

anaerobic digestion

Archaeal community during anaerobic digestion

PRJNA916699 | ENA

Anaerobic digestion

Anaerobic digestion Raw sequence reads