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Unknown (156)
Transcriptomics (43)
Proteomics (23)
Metabolomics (3)
Models (1)
Genomics (1)

Organisms

Homo sapiens (21)
Mus musculus (15)
Arabidopsis thaliana (13)
Bos taurus (8)
Saccharomyces cerevisiae (6)
Rattus norvegicus (4)
Plasmodium berghei (1)
Anopheles gambiae (1)
Triticum aestivum (1)
Canis lupus familiaris (1)
Escherichia coli (1)
Gallus gallus (1)
Mycobacterium tuberculosis SUMu001 (1)
Oryctolagus cuniculus algirus (1)
Ovis aries (1)
Sus scrofa domesticus (1)
Vipera ammodytes ammodytes (1)

Repository

biostudies-arrayexpress (44)
pride (23)
MetaboLights (3)
BioModels (1)

Tissue

Blood serum (4)
Cell culture (4)
Brain (2)
Cell suspension culture (1)
Endocrine pancreas (1)
Extracellular vesicle (1)
Feces (1)
Plant cell (1)
Vascular associated smooth muscle cell (1)
Vascular smooth muscle cell (1)
Venom (1)

Disease

Cocaine addiction (1)
Hepatocellular carcinoma (1)
Plasmodium berghei CTRP knockout strain (Dessens et al., 1999) infection (1)
Alzheimer's disease (1)
Babesiosis (1)
Cardiovascular system disease (1)
Mastitis (1)

Technology Type

Mass Spectrometry (23)
Shotgun proteomics (12)
Bottom-up proteomics (5)
SWATH MS (5)
Mass spectrometry (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Mass spectrometry assay (1)
Data-dependent acquisition (1)
Metaproteomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 4000 (2)
Perkin Elmer, USA (1)
GenePix Professional 4200A [Axon Instruments] (1)
5975C Series GC/MSD (Agilent) (1)
Agilent GC/MS, LECO GC/TOFMS (1)
Liquid Chromatography MS - negative - reverse-phase (1)
UPLC Q-TOF Premier (Waters) (1)

Publication Date

2015 (6)
2010 (6)
2007 (6)
2023 (6)
2025 (5)
2014 (5)
2013 (5)
2026 (4)
2012 (4)
2024 (4)
2005 (3)
2020 (3)
2011 (3)
2009 (3)
2022 (3)
2008 (2)
2006 (1)
2018 (1)
2016 (1)

UNIPROT ID/AC

A5YWB0 (1)
O13525 (1)
P00044 (1)
P00045 (1)
P00127 (1)
P00128 (1)
P00163 (1)
P00175 (1)
P00330 (1)
P00331 (1)
P00358 (1)
P00359 (1)
P00360 (1)
P00401 (1)
P00410 (1)
P00420 (1)
P00424 (1)
P00425 (1)
P00427 (1)
P00431 (1)
P00498 (1)
P00549 (1)
P00560 (1)
P00572 (1)
P00635 (1)
P00724 (1)
P00812 (1)
P00815 (1)
P00817 (1)
P00830 (1)

CHEBI ID

CHEBI:10723 (1)
CHEBI:1109 (1)
CHEBI:11851 (1)
CHEBI:12071 (1)
CHEBI:12936 (1)
CHEBI:12952 (1)
CHEBI:13086 (1)
CHEBI:13705 (1)
CHEBI:15343 (1)
CHEBI:15345 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15361 (1)
CHEBI:15377 (1)
CHEBI:15379 (1)
CHEBI:15380 (1)
CHEBI:15414 (1)
CHEBI:15422 (1)
CHEBI:15428 (1)
CHEBI:15430 (1)
CHEBI:15435 (1)
CHEBI:15437 (1)
CHEBI:15439 (1)
CHEBI:15440 (1)
CHEBI:15441 (1)
CHEBI:15467 (1)
CHEBI:15468 (1)
CHEBI:15471 (1)
CHEBI:15491 (1)

Metabolite Name

10-hydroxy-2E,8E-decadiene-4,6-diynoic acid (1)
3-guanidinopropionic acid (1)
4E,15Z-bilirubin IXa (1)
Acetic acid (1)
CerP(d18:1/12:0) (1)
Ethanol (1)
Ethanolamine (1)
Formic acid (1)
Fragment of GCA [− 2H2O] (1)
Fragment of GCA [− H2O] (1)
Fragment of GCDCA [− 2H2O] (1)
Fragment of GCDCA [− H2O] (1)
Fragment of GDCA [−2H2O] (1)
Fragment of GDCA [−H2O] (1)
Glycine (1)
Hydrazine (1)
Hydroxylamine (1)
L-N2-(2-carboxyethyl)arginine (1)
LysoPC(20:1) (1)
LysoPC(20:4) (1)
Methanol (1)
N-tosyl-L-lysinyl methyl ketone (1)
O-decanoyl-L-carnitine (1)
O-linoelaidylcarnitine (1)
O-octanoyl-R-carnitine (1)
PC(O-16:0/0:0) (1)
PE(20:4/18:1) (1)
Propionic acid (1)
Unidentified (UM 232; RT 808) (1)
[Na+ + GCDCA] (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Study type

Transcription profiling by array (36)
Comparative genomic hybridization by array (3)
RNA-seq of coding RNA (2)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
ChIP-seq (1)

Release Date

2022 (15)
2015 (13)
2012 (13)
2024 (12)
2019 (12)
2025 (11)
2014 (11)
2010 (11)
2021 (11)
2020 (10)
2013 (10)
2018 (10)
2011 (9)
2017 (9)
2009 (7)
2023 (7)
2008 (6)
2007 (6)
2026 (4)
2006 (4)
2005 (4)
2016 (4)
2000 (1)

Lab affiliation

Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland; Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Switzerland (2)
1Department of Neuropathology, Medical Research Institute, Tokyo Medical and Dental University (1)
Biomolecular Mass Spectrometry & Proteomics, Bijvoet Center for Biomolecular Research & Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.; Netherlands Proteomics Center, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Calpain Project Department of Advanced Science for Biomolecules Igakuken (Tokyo Metropolitan Institute of Medical Science) 2-1-6 Kamikitazawa, Setagaya-ku Tokyo 156-8506, Japan (1)
Cell Signal unit, OIST Graduate University, Okinawa, Japan (1)
Department of Chemistry University of Texas at Austin (1)
Department of Chemistry University of Virginia (1)
Department of Chemistry, Stanford University, Stanford, CA 94305; Sarafan ChEM-H, Stanford University, Stanford, CA 94305; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305 (1)
Department of Neuropathology, Medical Research institute and Center for Brain Integration Research, Tokyo Medical and Dental University (1)
Dina Kao, MD, FRCPC Professor of Medicine Division of Gastroenterology Director, Edmonton FMT program University of Alberta (1)
Division of Biological Science, Graduate School of Science, Nagoya University (1)
Ehime University (1)
Faculty of veterinary medicine, Internal diseases clinic, University of Zagreb (1)
Institute of Molecular Biology and Biophysics, Department of Biology, ETH Zurich, Zurich, Switzerland Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland (1)
Institute of Molecular Biology and Biophysics, Department of Biology, ETH Zurich, Zurich, Switzerland; Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland (1)
Internal Diseases Clinic, Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia (1)
Laboratory of Biomolecular Research, Paul Scherrer Institute, Villigen, Switzerland Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland (1)
Laboratory of Biomolecular Research, Paul Scherrer Institute, Villigen, Switzerland. Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland (1)
Laboratory of proteomics, Internal Diseases Clinic, Faculty of Veterinary Medicine, University of Zagreb, Heinzelova street 55, 10000 Zagreb, Croatia (1)
University of Algarve, Centre of Marine Sciences (CCMAR), Campus de Gambelas, 8005-139 Faro, Portugal (1)
University of Zagreb, Laboratory for proteomics, Internal diseases clinic, Zagreb (1)
aboratory of Biomolecular Research, Paul Scherrer Institute, Villigen, Switzerland. Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland. (1)

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Assessing Item-Level Fit for the DINA Model.

Not available

S-EPMC5978514 | biostudies-literature

Heterogeneous perception of the ethical legitimacy of unbalanced randomization by institutional review board members: a clinical vignette-based survey.

Not available

S-EPMC6092831 | biostudies-literature

Proteomic QSAR analysis of calpain substrate specificity

Calpains are intracellular Ca2+-regulated cysteine proteases that are essential for various cellular functions. Mammalian conventional calpains (calpain-1 and calpain-2) modulate the structure and function of their substrates by limited proteolysis; however, their substrate specificity remains uncle...

ORGANISM(S): Bos taurus (Bovine) Oryctolagus cuniculus algirus Mus musculus (Mouse) Homo sapiens (Human) Gallus gallus (Chicken) Ovis aries Sus scrofa domesticus (domestic pig) Rattus norvegicus (Rat)

2016-07-19 | PXD002532 | Pride

Transcription profiling of Arabidopsis recombinant strains - control hybridizations

The study of natural genetic variation for plant disease resistance responses is a complementary approach to utilizing mutants to elucidate genetic pathways. While some key genes involved in pathways controlling disease resistance, and signaling intermediates such as salicylic acid (SA) and jasmoni...

ORGANISM(S): Arabidopsis thaliana

2007-03-01 | E-TABM-224 | biostudies-arrayexpress

Transcription profiling of 211 Arabidopsis recombinant inbred lines treated with Silwet solution to identify regulatory quantitative trait loci

ORGANISM(S): Arabidopsis thaliana

2007-04-11 | E-TABM-126 | biostudies-arrayexpress

Sample Size Requirements for Applying Diagnostic Classification Models.

Not available

S-EPMC7868330 | biostudies-literature

Glucagon receptor gene mutations with hyperglucagonemia but without the glucagonoma syndrome.

Not available

S-EPMC4390892 | biostudies-literature

Label free metaproteome examination of lyophilized fecal microbiota transplant (LFMT) and lyophilized sterile fecal filtrate (LSFF), and their effects on gut function during resolution of recurrent Clostridioides difficile infection (rCDI).

This project centers on the analysis of the human gut microbiota by 3 complementary technologies- bottom-up metaproteomics, chemical isotope labeled LC-MS metabolomics, and proximity ligation metagenomics. Stool samples were collected from 7 rCDI patients participated in a clinical trial which compa...

ORGANISM(S): Homo sapiens (Human)

2026-09-23 | PXD072731 | Pride

Dendritic cell co-stimulatory and co-inhibitory markers in chronic HCV: an Egyptian study.

Not available

S-EPMC3837270 | biostudies-literature

Transcription profiling of Arabidopsis treated with silwet for varying time and high throughout haplotyping and single feature polymorphism markers in Arabidopsis

ORGANISM(S): Arabidopsis thaliana

2007-01-01 | E-TABM-61 | biostudies-arrayexpress

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