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Transcriptomics (394)
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Repository

biostudies-arrayexpress (439)
pride (220)
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UNIPROT ID/AC

O00187 (1)
P01024 (1)
P02741 (1)
P04003 (1)
P06681 (1)
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Q15485 (1)

CHEBI ID

CHEBI:16704 (15)
CHEBI:7916 (15)
CHEBI:16919 (14)
CHEBI:17154 (14)
CHEBI:17568 (14)
CHEBI:15741 (13)
CHEBI:17368 (13)
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CHEBI:48131 (12)
CHEBI:15318 (11)
CHEBI:15891 (11)
CHEBI:15971 (11)
CHEBI:16335 (11)
CHEBI:18132 (1)
CHEBI:506227 (1)

Metabolite Name

Uridine (14)
Adenine (13)
Guanosine (13)
Hypoxanthine (13)
Creatine (12)
Uracil (12)
Xanthine (12)
Azelaic acid (11)
Inosine (11)
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Creatinine (10)
Cytidine (10)
Glyceric acid (10)
Linoleic acid (10)
Pyroglutamic acid (10)
Thymidine (10)
Adenosine (9)
Citric acid (9)
N-Acetylneuraminic acid (9)
Oleic acid (9)
Stachyose (9)
Taurine (9)
Uric acid (9)
Adipic acid (8)
Deoxyguanosine (8)
Glutaric acid (8)
Guanine (8)
Indoleacetic acid (8)
Kynurenic acid (8)
L-Arginine (8)

First Public Date

2026 (2)
2024 (2)
2019 (1)
2017 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Peking University (3)
Shanghai Jiao Tong University (3)
1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA (2)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (2)
Department of Fisheries, College of Animal Science and Technology, Hunan agriculture university (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (2)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA (2)
Guangdong Pharmaceutical University (2)
Institute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang University (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
NREL (2)
No. 2 West Yuanmingyuan Road, Haidian District, Beijing (2)
Professor Laboratory Medicine and Pathology Mayo Clinic, Rochester, MN, USA (2)
Reproductive Medicine Center, Department of Obstetrics and Gynecology, The First Affiliated Hospital of Anhui Medical University, No.218 Jixi Road, Hefei 230022, China (2)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (2)
Sichuan university (2)
Tea Research Institute, Qingdao Agricultural University, Qingdao, Shandong, China (2)
The First Affiliated Hospital of Fujian Medical University (2)
Tongji University (2)
Zhejiang University (2)
1Department of Chemistry, Georgia State University, Atlanta, GA (1)
1State Key Laboratory of Biotherapy, West China Second University Hospital, Sichuan University;China (1)
Advanced Water Management Centre, The University of Queensland, St. Lucia, Brisbane, QLD 4072, Australia (1)
Affiliated Hospital of Nanjing University of Chinese Medicine (1)
Analytical Research Center for Organic and Biological Molecules, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai 201203, China (1)
Anhui Medical University (1)
Basic Immune System of Plants / Protein Mass SpectrometryMax Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Beijing Bio-Tech Pack Technology Company Ltd. (1)

IsPrivate

False (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
6x(2)H labeled dimethylated L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (268)
RNA-seq of coding RNA (63)
ChIP-seq (37)
Comparative genomic hybridization by array (14)
RNA-seq of non coding RNA (8)
ChIP-chip by tiling array (7)
ChIP-chip by array (7)
Unknown experiment type (6)
Other (5)
Methylation profiling by high throughput sequencing (5)
Methylation profiling by array (4)
Animal - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
Genotyping by high throughput sequencing (2)
RNA-seq of coding RNA from single cells (2)
Capture-C (1)
Transcription profiling by RT-PCR (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Proteomic profiling by array (1)

Release Date

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2009 (87)
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2001 (4)
2002 (2)
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1999 (2)
1998 (1)

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The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo.

Not available

S-EPMC2770101 | biostudies-literature

Staphylococcus aureus DinG, a helicase that has evolved into a nuclease.

Not available

S-EPMC3270479 | biostudies-literature

Helicity-modulated remote C-H functionalization.

Not available

S-EPMC10146887 | biostudies-literature

The helicase DinG responds to stress due to DNA double strand breaks.

Not available

S-EPMC5679670 | biostudies-literature

Structural variation of types IV-A1- and IV-A3-mediated CRISPR interference

CRISPR-Cas mediated DNA-interference typically relies on sequence-specific binding and nucleolytic degradation of foreign genetic material. Type IV-A CRISPR-Cas systems diverge from this general mechanism, using a nuclease-independent interference pathway to suppress gene expression for gene regulat...

ORGANISM(S): Pseudomonas oleovorans

2024-10-08 | PXD056399 | Pride