Ding Yu Y - OmicsDI

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Unknown (2419)
Proteomics (95)
Transcriptomics (18)
Metabolomics (8)
Genomics (5)

Organisms

Schizophyllum commune H4-8 (46)
Mycobacterium tuberculosis SP7 (46)
Oryza sativa Japonica Group (46)
Crotalus durissus terrificus (46)
Eriocheir sinensis (46)
Candidatus Endoriftia persephonae (46)
Mycobacterium tuberculosis SP10 (46)
Mycobacterium tuberculosis SP13 (46)
Cotesia typhae (46)
Mycobacterium tuberculosis SP22 (46)
Cepaea nemoralis (46)
Enterobacter ludwigii (46)
Corynebacterium diphtheriae bv. mitis str. ISS 3319 (46)
Olea europaea (46)
Homo sapiens (45)
Mus musculus (8)
Rattus norvegicus (3)
Drosophila melanogaster (3)
Oryza sativa Japonica Group (2)
Rhodococcus opacus (1)
Citrus sinensis (1)
Elaphe taeniura (1)
Nelumbo nucifera (1)
Vibrio parahaemolyticus RIMD 2210633 (1)
Mus sp. (1)
Pseudomonas aeruginosa PAO1 (1)
Spinacia oleracea (1)
Danio rerio (1)
Oryctolagus cuniculus (1)
Escherichia coli (1)

Repository

iProX (48)
pride (46)
biostudies-arrayexpress (18)
MetaboLights (8)
EGA (5)
MassIVE (1)

Tissue

Cell culture (18)
Epithelial cell (6)
Plant cell (4)
Liver (3)
Flower (2)
Cell suspension culture (2)
Leaf sheath (1)
Decidua (1)
Seminal vesicle (1)
Extracellular exosome (1)
Sperm (1)
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Urine (1)
Macrophage (1)
Blood serum (1)
Seminal plasma (1)
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Leaf (1)
Fibroblast (1)
Primary cell (1)
Permanent cell line cell (1)
Blood cell (1)
Colon (1)
Blood (1)

Disease

Cervix carcinoma (3)
Pulmonary neuroendocrine tumor (2)
Breast cancer (2)
S enteritidis (1)
Ovarian cancer (1)
Pulmonary tuberculosis (1)
COVID-19 (1)
Colon cancer (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (46)
Shotgun proteomics (13)
Top-down proteomics (10)
Mass spectrometry (8)
Data-independent acquisition (7)
Data-dependent acquisition (7)
Bottom-up proteomics (4)
Gel-based experiment (3)
DiaPASEF (2)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Olink affinity proteomics (1)
Mass spectrometry imaging (1)
Affinity proteomics (1)
SWATH MS (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
Q Exactive (2)
Other (1)
Illumina Genome Analyzer IIx (1)
Scanning hardware (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2025 (19)
2026 (12)
2024 (12)
2019 (11)
2023 (10)
2021 (10)
2022 (8)
2020 (5)
2012 (3)
2010 (3)
2015 (2)
2014 (2)
2008 (2)
2007 (2)
2016 (1)
2013 (1)
2011 (1)
2006 (1)
2017 (1)
2018 (1)

CHEBI ID

CHEBI:16411 (4)
CHEBI:40992 (4)
CHEBI:16525 (4)
CHEBI:17687 (4)
CHEBI:16755 (4)
CHEBI:16359 (4)
CHEBI:16919 (4)
CHEBI:17154 (4)
CHEBI:16450 (4)
CHEBI:30776 (3)
CHEBI:89929 (3)
CHEBI:34778 (3)
CHEBI:1606 (3)
CHEBI:17252 (3)
CHEBI:30860 (3)
CHEBI:10072 (3)
CHEBI:18344 (3)
CHEBI:70984 (3)
CHEBI:70979 (3)
CHEBI:24813 (3)
CHEBI:28478 (3)
CHEBI:15584 (3)
CHEBI:36274 (3)
CHEBI:18183 (3)
CHEBI:17151 (3)
CHEBI:17306 (3)
CHEBI:16217 (3)
CHEBI:27432 (3)
CHEBI:16914 (3)
CHEBI:37084 (3)

Metabolite Name

4-acetamidobutanoate (3)
Creatine (3)
7-methylxanthine (2)
3-methylxanthine (2)
N-acetylmethionine (2)
5-hydroxyindoleacetate (2)
3-methoxytyrosine (2)
N-Acetyl-D-glucosamine (2)
Indoleacetic acid (2)
Phloretin (2)
Dimethylglycine (2)
Valine (2)
Phenylacetic acid (2)
Alpha-Linolenic acid (2)
Chrysin (2)
Leucine (2)
Betaine (2)
Genistein (2)
N6-methyladenosine (2)
4-Pyridoxic acid (2)
Daidzein (2)
Palmitoleic acid (2)
Acetylcholine (2)
Nicotinamide (2)
Indole (2)
Jasmonic acid (2)
Cholic acid (2)
Arachidonic acid (2)
Melatonin (2)
Pipecolic acid (2)

Modification

Not available (1)

Study type

Transcription profiling by array (12)
RNA-seq of coding RNA (4)
Comparative genomic hybridization by array (1)
Other (1)

Release Date

2025 (419)
2022 (338)
2023 (317)
2024 (284)
2021 (276)
2020 (189)
2019 (107)
2018 (91)
2016 (77)
2017 (76)
2015 (63)
2026 (55)
2014 (42)
2013 (25)
2012 (23)
2011 (17)
2010 (11)
2008 (10)
2009 (6)
2007 (5)
2006 (4)
2002 (1)
1997 (1)

Lab affiliation

Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA. (4)
Peking University (3)
Department of Biochemistry UT Southwestern Medical Center (2)
Guangdong Pharmaceutical University (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA (2)
Westlake Laboratory of Life Sciences and Biomedicine, Key Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China. (1)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas (1)
Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China (1)
Beijing Chest Hospital (1)
Key Laboratory of Neuroregeneration, Nantong University, Nantong, China. (1)
College of Agriculture, Nanjing Agricultural University, Nanjing, China (1)
National Engineering Laboratory For Animal Breeding,China Agricultural University,No 2Yuanmingyuan West Rd,Beijing 10093,China (1)
Children's Hospital of Soochow University, Suzhou (1)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (1)
Lanzhou University, Lanzhou, Gansu Province, China (1)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (1)
Department of Neurology, Renmin Hospital of Wuhan University, Wuhan, Hu Bei Province, 430060, China (1)
Shaoxing Maternity and Child Health Care Hospital, Shaoxing 312000, China. (1)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (1)
Division of Pediatric Gastroenterology, Department of Pediatrics, Stanford University, Palo Alto, CA, 94304, USA. (1)
Insilico Meidicine Shanghai Ltd. (1)
Department of System Biology, School of Life Sciences, Guangdong Provincial Key Laboratory of Cell Microenvironment and Disease Research, Shenzhen Key Laboratory of Cell Microenvironment, Southern University of Science and Technology, Shenzhen, 518055, China. (1)
2Proteome Exploration Laboratory, Beckman Institute, California Institute of Technology, Pasadena, CA 91125 (1)
Hangzhou Women's Hospital, Hangzhou, China (1)
Key Laboratory of Environmental Medicine Engineering, Ministry of Education, School of Public Health, Southeast University, Nanjing, China. (1)
Shanghai Jiao Tong University School of Medicine (1)
University of Queensland, Australia (1)
Beijing University of Chinese Medicine, School of Traditional Chinese Medicine, Attending Physician, Assistant Researcher (1)
Northeastern University (1)
Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China (1)

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Expression data from testes of CG3875 knockout and wildtype flies

CG3875 is a young duplicate gene of kep1 family originated recently in Drosophila melanogaster (D. melanogaster) species complex (including D. melanogaster, D. simulans, D. mauritiana and D. sechellia) after it split from D. yakuba. It encodes an RNA-binding protein containing a single maxi-KH domai...

ORGANISM(S): Drosophila melanogaster

2010-12-31 | E-GEOD-22289 | biostudies-arrayexpress

The Identification of the Biomarkers of Sheng-Ji Hua-Yu Formula Treated Diabetic Wound Healing Using Modular Pharmacology.

Not available

S-EPMC8636748 | biostudies-literature

Molecular Characterization of Rifampicin-Resistant Staphylococcus aureus Isolates from Retail Foods in China.

Not available

S-EPMC8698944 | biostudies-literature

Accuracy of IgM antibody testing, FQ-PCR and culture in laboratory diagnosis of acute infection by Mycoplasma pneumoniae in adults and adolescents with community-acquired pneumonia.

Not available

S-EPMC3637260 | biostudies-literature

Expression data from BAP1 depleted cells

The deubiquitinase BAP1 is a candidate tumor suppressor regulating cell proliferation in human and is required for development in Drosophila. BAP1 is assembled into high molecular weight transcriptional multi-protein complexes. In order to identify potential BAP1 target genes, global mRNA expression...

ORGANISM(S): Homo sapiens

2010-11-05 | E-GEOD-23035 | biostudies-arrayexpress

Effects of Jie Yu Wan on Generalized Anxiety Disorder: A Randomized Clinical Trial.

Not available

S-EPMC9012658 | biostudies-literature

Metformin use and associated risk of total joint replacement in patients with type 2 diabetes: a population-based matched cohort study.

Not available

S-EPMC9829054 | biostudies-literature

A noteworthy response process of Microcystis aeruginosa induced by exogenous reactive oxygen species in algae-laden water treatment

The effectiveness of reactive oxygen species (ROS) generated by advanced oxidation processes (AOPs) in inactivating harmful algae in drinking water varies considerably. Therefore, the physiological and biochemical reactions of algae need to be considered to clarify the underlying mechanisms. Herein,...

2024-09-26 | MTBLS8024 | MetaboLights

Drosophila CG11700 may not affect male fecundity-lifespan tradeoff as previously reported.

Not available

S-EPMC11789941 | biostudies-literature

Gene expression signatures following nerve injury in a rat model (0h-9h)

We used microarrays to distinguish the gene expression differences among different time points after injury. We generated proximal sciatic nerve (SN) tissues (0.5cm) at 0h, 0.5h, 1h, 3h, 6h and 9h after sciatic nerve resection.

ORGANISM(S): Rattus norvegicus

2012-12-20 | E-GEOD-33175 | biostudies-arrayexpress

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