Discovery proteomics

Show results for

Proteomics (19103)
Unknown (4104)
Genomics (146)
Transcriptomics (88)
Metabolomics (39)
Other (33)
Multiomics (7)
Methylation profiling (2)

Organisms

Homo sapiens (969)
Mus musculus (112)
Escherichia coli (18)
Rattus norvegicus (11)
Saccharomyces cerevisiae (7)
Arabidopsis thaliana (6)
Gallus gallus (5)
Drosophila melanogaster (5)
Bos taurus (5)
Caenorhabditis elegans (5)
Rhodospirillum rubrum (3)
Ixodes scapularis (2)
Bartonella henselae (2)
Sus scrofa (2)
Macaca mulatta (2)
Bombyx mori (2)
Acyrthosiphon pisum (2)
Zea mays (2)
Staphylococcus aureus (2)
Picea glauca (1)
Solanum lycopersicum (1)
Leptospira interrogans serovar Copenhageni (1)
Clostridium autoethanogenum (1)
Sinorhizobium meliloti 2011 (1)
Human immunodeficiency virus 1 (1)
Danio rerio (1)
Klebsiella pneumoniae ATCC 43816 (1)
Megavirus baoshan (1)
Penicillium digitatum (1)
Yersinia pestis biovar Microtus str. 91001 (1)

Organisms

Homo sapiens (67)
Mus musculus (26)
Rattus norvegicus (4)
Arabidopsis thaliana (2)
Sinorhizobium meliloti 2011 (1)
Clostridium autoethanogenum (1)
Manduca sexta (1)
Ixodes scapularis (1)
Bartonella henselae (1)
Drosophila melanogaster (1)
Danio rerio (1)

Repository

pride (17377)
jPOST (616)
MassIVE (573)
iProX (303)
ENA (132)
PeptideAtlas (118)
geo (95)
biostudies-arrayexpress (67)
PanoramaPublic (52)
MetaboLights (35)
GPMDB (20)
PAXDB (14)
EGA (4)
GNPS (4)
NODE (1)

Tissue

Cell culture (3678)
Epithelial cell (1049)
Brain (941)
Permanent cell line cell (612)
Liver (529)
Blood plasma (527)
Plant cell (392)
Blood (382)
Leaf (355)
Heart (340)
Fibroblast (339)
Kidney (334)
Lung (321)
Whole body (284)
Blood serum (278)
Cell suspension culture (259)
Macrophage (252)
T cell (240)
Blood cell (237)
B cell (209)
Hepatocyte (208)
Colon (190)
Skin (170)
HeLa cell (168)
Bone marrow (163)
Plasma Non-glyco (17)
Others (17)
Large Intestine (6)
Urine (2)
Male Reproductive System (2)

Disease

Disease free (435)
Breast cancer (375)
Colon cancer (234)
Acute leukemia (181)
Cardiovascular system disease (133)
Alzheimer's disease (123)
Cervix carcinoma (119)
Malignant neoplasm of ovary (86)
Prostate adenocarcinoma (80)
Plasmodium falciparum malaria (78)
Parkinson's disease (75)
Wounds and Injuries (75)
Lymphoma (73)
Lung cancer (73)
Type 2 diabetes mellitus (72)
Melanoma (71)
Brain cancer (66)
COVID-19 (56)
Non-small cell lung carcinoma (54)
Hepatocellular carcinoma (47)
Pancreatic ductal adenocarcinoma (46)
Pancreatic cancer (41)
Amyotrophic lateral sclerosis (40)
Trypanosomiasis (40)
Neuroblastoma (38)
Glioblastoma (38)
Brain glioblastoma multiforme (36)
Not Available (20)
Colorectal Carcinoma (5)
Normal (1)

Technology Type

Mass Spectrometry (17377)
Shotgun proteomics (9591)
Bottom-up proteomics (3423)
Data-dependent acquisition (2099)
Affinity purification coupled with mass spectrometry proteomics (1960)
Gel-based experiment (983)
Data-independent acquisition (888)
SWATH MS (620)
Top-down proteomics (493)
Chemical cross-linking coupled with mass spectrometry proteomics (353)
HDMSE (175)
SRM/MRM (169)
DiaPASEF (96)
All-ion fragmentation (87)
Affinity proteomics (75)
MSE (63)
Immunopeptidomics (42)
Metaproteomics (29)
Mass spectrometry (28)
Mass spectrometry imaging (28)
Proteogenomics (25)
Glycoproteomics (14)
Olink affinity proteomics (8)
RNA mass spectrometry (8)
Mass spectrometry assay (6)
SomaScan affinity proteomics (5)
NMR spectroscopy (3)
PAcIFIC (3)
Gel-free quantification method (2)
ITRAQ reagent (1)

Instrument Platform

Q Exactive (105)
Orbitrap Fusion Lumos (76)
LTQ Orbitrap Velos (61)
LTQ Orbitrap Elite (40)
LTQ (33)
Orbitrap Fusion (32)
LTQ Orbitrap (32)
Orbitrap Eclipse (31)
Q Exactive HF (30)
TripleTOF 5600 (25)
Q Exactive Plus (24)
Orbitrap Exploris 480 (22)
Instrument (20)
Q Exactive HF-X (19)
LTQ Orbitrap Discovery (10)
Orbitrap Fusion ETD (10)
Orbitrap Astral (10)
TimsTOF Pro 2 (8)
TimsTOF Pro (7)
TimsTOF HT (5)
Orbitrap Ascend (5)
Illumina Genome Analyzer IIx (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (2)
InnoScan 900 (1)
Affymetrix Gene Atlas System (1)
Agilent 2100 Bioanalyzer (1)
NextSeq 500 (1)
TripleTOF 5600+ (1)
Pegasus (1)

Publication Date

2025 (2754)
2024 (2510)
2026 (2205)
2023 (2111)
2022 (2101)
2021 (1865)
2020 (1395)
2019 (1206)
2018 (1003)
2017 (643)
2016 (524)
2015 (338)
2014 (210)
2013 (139)
2010 (17)
2012 (13)
2011 (12)
2009 (9)
2008 (8)
2006 (2)
2007 (1)

UNIPROT ID/AC

E0CYZ8_MOUSE (3)
TCL1A_MOUSE (3)
A14EL_MOUSE (3)
TSX_MOUSE (3)
ATG12_MOUSE (3)
RPAB2_MOUSE (3)
DPPA4_MOUSE (3)
S1PBP_MOUSE (3)
ZN287_MOUSE (3)
RPP25_MOUSE (3)
TCAL8_MOUSE (3)
DPA5A_MOUSE (3)
F10C1_MOUSE (3)
SKA2_MOUSE (3)
TYDP2_MOUSE (3)
RBIS_MOUSE (3)
SPC25_MOUSE (3)
GON7_MOUSE (3)
PALM3_MOUSE (3)
CBPC3_MOUSE (3)
BICRL_MOUSE (3)
MTF1_MOUSE (3)
RTEL1_MOUSE (3)
AEBP2_MOUSE (3)
CB076_MOUSE (3)
RN138_MOUSE (3)
AF10_MOUSE (3)
PCGF5_MOUSE (3)
GEMI_MOUSE (3)
RNF12_MOUSE (3)

ENSEMBL ID

ENSECAG00000021580 (51)
ENSECAG00000014414 (51)
ENSECAG00000009556 (51)
ENSECAG00000004960 (51)
ENSECAP00000013223 (50)
ENSECAP00000007368 (50)
ENSECAG00000021499 (50)
ENSECAG00000019927 (50)
ENSECAG00000011847 (50)
ENSECAG00000004973 (50)
ENSECAG00000001810 (50)
ENSECAP00000003495 (49)
ENSECAG00000014858 (49)
ENSECAG00000009752 (49)
ENSECAG00000006095 (49)
ENSECAG00000000207 (48)
ENSECAG00000010481 (46)
ENSECAP00000007504 (45)
ENSECAG00000012096 (44)
ENSECAG00000000548 (44)
ENSECAG00000024571 (43)
ENSECAG00000004201 (43)
ENSECAG00000019900 (42)
ENSECAG00000016475 (42)
ENSECAG00000015581 (41)
ENSECAG00000021882 (40)
ENSECAG00000021116 (40)
ENSECAG00000014197 (40)
ENSECAG00000003345 (40)
ENSECAG00000000841 (40)

CHEBI ID

CHEBI:16919 (7)
CHEBI:16335 (6)
CHEBI:16750 (5)
CHEBI:15891 (5)
CHEBI:16704 (5)
CHEBI:32816 (5)
CHEBI:27897 (5)
CHEBI:17596 (5)
CHEBI:17802 (4)
CHEBI:17533 (4)
CHEBI:17562 (4)
CHEBI:6650 (4)
CHEBI:28044 (4)
CHEBI:7916 (4)
CHEBI:16411 (4)
CHEBI:17405 (4)
CHEBI:422 (4)
CHEBI:15354 (4)
CHEBI:17295 (4)
CHEBI:90333 (3)
CHEBI:17768 (3)
CHEBI:18077 (3)
CHEBI:17200 (3)
CHEBI:33508 (3)
CHEBI:15713 (3)
CHEBI:16264 (3)
CHEBI:17659 (3)
CHEBI:26271 (3)
CHEBI:18132 (3)
CHEBI:17858 (3)

Metabolite Name

Adenosine (6)
Creatine (6)
Choline (5)
L-Tyrosine (5)
Inosine (5)
L-Alanine (4)
Mannitol (4)
L-Arginine (4)
Taurine (4)
Citric acid (4)
L-Tryptophan (4)
L-Glutamine (4)
Adenine (4)
Uric acid (4)
Cytidine (4)
Guanosine (4)
Uridine (4)
Sucrose (4)
Creatinine (4)
L-Valine (4)
L-Leucine (4)
Urocanate (3)
N,N-Dimethylglycine (3)
Hypotaurine (3)
Pyruvic acid (3)
D-Galactose (3)
D-Fructose (3)
D-Glucose (3)
Glycolic acid (3)
Trigonelline (3)

First Public Date

2025 (26)
2023 (21)
2026 (16)
2024 (14)
2022 (10)
2021 (8)
2018 (8)
2017 (8)
2020 (7)
2014 (5)
2019 (3)
2013 (3)
2016 (2)
2015 (1)

Classification

bacteria (2)

Modification

2x(15)N labeled L-lysine (35)
4x(15)N labeled L-arginine (34)
4-tetrahydrothiazine-3-carboxylic acid (30)
Not available (25)
15.994915 (24)
N6 (24)
57.021464 (24)
N6-dimethyl-L-lysine (21)
42.010565 (13)
4x(2)H labeled dimethylated residue (10)
-17.026549 (10)
-18.010565 (7)
+3amu) (6)
45.029395 (5)
57.02146 (5)
15.99491 (5)
79.966331 (4)
4x(2)H labeled dimethylated L-lysine (4)
58.005479 (3)
0.984 (3)
6.020129 (2)
56.026215 (2)
10.008269 (2)
6x(2)H labeled dimethylated L-arginine (2)
4 (2)
3.994915 (1)
19.989829 (1)
57.02146530151367 (1)
15.994915008544922 (1)
0.9840160012245178 (1)

Study type

Proteomic profiling by array (28)
Transcription profiling by array (20)
RNA-seq of coding RNA (12)
Antigen profiling (3)
ChIP-seq (2)
Animal - One-color microarray (1)
Proteomic profiling by mass spectrometer (1)

Release Date

2025 (455)
2023 (438)
2022 (412)
2021 (400)
2024 (388)
2020 (310)
2019 (244)
2018 (231)
2017 (218)
2016 (177)
2015 (160)
2014 (160)
2013 (129)
2011 (82)
2012 (78)
2026 (78)
2010 (71)
2009 (59)
2008 (34)
2007 (17)
2006 (8)
2005 (7)
2003 (7)
2004 (6)
2002 (1)
2000 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (126)
EDyP (80)
University of Victoria (48)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (47)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (34)
The University of Melbourne (34)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (30)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (28)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (27)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (26)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (24)
Head of the Curie Institute Mass Spectrometry Platform (24)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (22)
Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (21)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (20)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (20)
UCSF (19)
ETH Zurich, Institute of Molecular Systems Biology, Zurich, Switzerland (19)
Harvard Medical School (18)
IRCCS Istituto G Gaslini (18)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (18)
Institute of Molecular Biology (IMB), Mainz, Germany (17)
Pacific Northwest National Laboratory (16)
The University of Sydney (15)
University of Washington (15)
University of Oxford (15)
North Carolina State University (15)
iBET – Instituto de Biologia Experimental e Tecnológica, Av. da República, Oeiras, 2780-157, Portugal (14)
General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany (14)
Michigan State University (14)

Previous page
1 / 2352
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 2352
Next page

Sort by:

Relevance

Page size

High-performance nano-flow liquid chromatography column combined with high- and low-collision energy data-independent acquisition enables targeted and discovery identification of modified ribonucleotides by mass spectrometry (Data-independent acquisition)

Over 170 post-transcriptional RNA modifications have been described and are common in all kingdoms of life. These modifications range from methylation to complex chemical structures, with methylation being the most abundant. RNA modifications play a key role in RNA folding and function and their ...

2023-10-26 | MTBLS2959 | MetaboLights

2023-10-26 | MTBLS2497 | MetaboLights

Heart-muscle expression ratios in pig obtained by 454-sequencing, iTRAQ-based proteomics and cDNA microarrays

The recent development within high-throughput technologies for expression profiling has allowed for parallel analysis of transcriptomes and proteomes in biological systems such as comparative analysis of transcript and protein levels of tissue regulated genes. Until now, such studies of have only in...

ORGANISM(S): Sus scrofa

2009-01-22 | E-GEOD-10122 | biostudies-arrayexpress

Optimizing a proteomics platform for urine biomarker discovery.

Not available

S-EPMC2957724 | biostudies-literature

Accurate Estimation of Context-Dependent False Discovery Rates in Top-Down Proteomics.

Not available

S-EPMC6442365 | biostudies-literature

Global Proteomics Indicates Subcellular-Specific Anti-Ferroptotic Responses to Ionizing Radiation.

Not available

S-EPMC11780130 | biostudies-literature

Biomarker discovery in mass spectrometry-based urinary proteomics.