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ProteomicsIn Situ Structural Restraints from Crosslinking Mass Spectrometry in Human Mitochondria
The field of structural biology is increasingly focusing on studying proteins in situ, i.e. in a larger biological context. Crosslinking mass spectrometry is contributing to this effort, typically through the use of MS-cleavable crosslinkers. Here, we apply the popular non-cleavable crosslinker disu...
ORGANISM(S): Homo sapiens (Human) 
2019-12-03 | PXD014675 | Pride
Crosslinking mass spectrometry Human mitochondria In situ large-scale structural biology Non-cleavable dss crosslinker Comparative modelling 
UnknownAccounting for pairwise distance restraints in FFT-based protein-protein docking.
Not available
S-EPMC6095118 | biostudies-literature
UnknownAlgorithm for selection of optimized EPR distance restraints for de novo protein structure determination.
Not available
S-EPMC3073550 | biostudies-literature
ProteomicsDeciphering Diazirine Reaction Mechanism: through Irradiation Modulation for Residue-Specific Distance Restraints in Protein Photo-Crosslinking
The diazirine photoreactive group has been widely used for photo-labeling and photo-cross-linking (PXL) of proteins. Yet, due to the mechanistic complexity of diazirine photo-reaction, site-specific and quantitative analysis of protein PXL data remains challenging. Herein, we have built an in-line p...
ORGANISM(S): Bos taurus (Bovine) 
2024-06-22 | PXD048452 | Pride
Photo cross-linking Multiple reaction monitoring Optical power density Distance restraints Alkyl diazirine 
UnknownImpact of 15N R2/R1 relaxation restraints on molecular size, shape, and bond vector orientation for NMR protein structure determination with sparse distance restraints.
Not available
S-EPMC3095518 | biostudies-literature
UnknownProtocol for deriving distance restraints from AlphaFold for use in solution NMR structure determination.
Not available
S-EPMC12329297 | biostudies-literature
UnknownRestraintMaker: a graph-based approach to select distance restraints in free-energy calculations with dual topology.
Not available
S-EPMC8994745 | biostudies-literature
UnknownStructural prediction of protein models using distance restraints derived from cross-linking mass spectrometry data.
Not available
S-EPMC5999019 | biostudies-literature
UnknownProtein structure prediction using deep learning distance and hydrogen-bonding restraints in CASP14.
Not available
S-EPMC8616857 | biostudies-literature
UnknownAssignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS.
Not available
S-EPMC9817166 | biostudies-literature
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