Diurnal gene expression

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Unknown (520)
Transcriptomics (486)
Genomics (462)
Proteomics (22)
Metabolomics (7)
Other (5)
Models (3)
Methylation profiling (1)

Organisms

Mus musculus (197)
Arabidopsis thaliana (77)
Homo sapiens (37)
Oryza sativa (32)
Rattus norvegicus (21)
Zea mays (13)
Danio rerio (13)
Drosophila melanogaster (11)
Fagus sylvatica (8)
Triticum aestivum (6)
Gallus gallus (5)
Euphorbia esula (4)
Oryza sativa Japonica Group (4)
Euphausia superba (3)
Solanum lycopersicum (3)
Ostreococcus tauri (2)
Capsella bursa-pastoris (2)
Brassica napus (2)
Medicago truncatula (2)
Populus trichocarpa (2)
Solanum tuberosum (2)
Brachypodium distachyon (2)
Melitaea cinxia (2)
Rhabdomys pumilio (1)
Brassica carinata x Brassica rapa (1)
Prunus mume (1)
Pinus taeda (1)
Saccharina japonica (1)
Cryptomeria japonica (1)
Thalassiosira pseudonana CCMP1335 (1)

Organisms

Mus musculus (95)
Nitzschia inconspicua (89)
Sorghum bicolor (55)
Arabidopsis thaliana (34)
Oryza sativa (26)
Homo sapiens (12)
Chlamydomonas reinhardtii (11)
Fagus sylvatica (8)
Danio rerio (6)
Glycine max (4)
Zea mays (4)
Vitis vinifera (4)
Rattus norvegicus (4)
Phaeodactylum tricornutum (3)
Oryza sativa Indica Group (3)
Oryza sativa Japonica Group (3)
Euphorbia esula (2)
Orbicella faveolata (2)
Ictidomys tridecemlineatus (2)
Synechococcus elongatus PCC 7942 = FACHB-805 (2)
Triticum aestivum (2)
Drosophila melanogaster (2)
Gallus gallus (2)
Pseudotsuga menziesii (1)
Oncidium hybrid cultivar (1)
Pseudomonas syringae pv. syringae B728a (1)
Manduca sexta (1)
Phaeodactylum tricornutum CCAP 1055/1 (1)
Melitaea cinxia (1)
Picosynechococcus sp. PCC 7002 (1)

Repository

ENA (427)
biostudies-arrayexpress (330)
geo (196)
pride (12)
MassIVE (8)
MetaboLights (7)
BioModels (3)
ExpressionAtlas (1)
EGA (1)
iProX (1)
PAXDB (1)

Tissue

Liver (3)
Leaf (2)
Photosynthetic cell (2)
Cell culture (1)
Hepatocyte (1)
Plant ovary (1)
Rosette (1)

Disease

Disease free (2)
Normal (1)

Technology Type

Mass Spectrometry (12)
Mass spectrometry (7)
Shotgun proteomics (7)
Bottom-up proteomics (3)
Gel-based experiment (3)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (6)
Illumina HiSeq 2000 (5)
Illumina HiSeq 4000 (5)
Agilent High resolution C scanner (4)
Illumina HiSeq 2500 (3)
Liquid Chromatography MS - positive - reverse phase (3)
418 [Affymetrix] (2)
BGISEQ-500 (2)
Q Exactive (2)
Q Exactive HF-X (2)
Liquid Chromatography MS - negative - reverse phase (2)
IPK PhenoSphere (1)
TruSeq Stranded mRNA assay (Illumina) (1)
PureLink RNA Mini Kit (Thermo Fisher) (1)
Standard cell culture (1)
Maxwell® 16 AS2000 (1)
Agilent 210 BioAnalyzer (1)
15 mL Falcon tubes (1)
ScriptSeq v2 Complete Gold Kit (Epidemiology)(Epicentre), ScriptSeq Index PCR primers (Set 1) (Epicentre) (1)
Nimbelgen (1)
Illumina Genome Analyzer IIx (1)
DNBSEQ-T7 (1)
Illumina MiSeq (1)
NextSeq 500 (1)
8890 GC/MS (1)
Dionex instrument model (1)
LTQ Orbitrap (1)
Orbitrap Fusion (1)
Q Exactive Orbitrap HF (1)
Liquid Chromatography MS - alternating – hilic (1)

Publication Date

2015 (51)
2010 (43)
2013 (42)
2011 (41)
2008 (39)
2012 (38)
2017 (34)
2014 (29)
2024 (26)
2025 (25)
2009 (25)
2023 (23)
2026 (20)
2022 (20)
2018 (19)
2016 (18)
2007 (18)
2021 (16)
2020 (10)
2019 (8)
2005 (6)
2006 (5)
2001 (1)

UNIPROT ID/AC

6PGD_SYNE7 (1)
AAR_SYNE7 (1)
ACCA_SYNE7 (1)
ACCD_SYNE7 (1)
ACP_SYNE7 (1)
ACSF_SYNE7 (1)
ALDEC_SYNE7 (1)
AMPA_SYNE7 (1)
ANMK_SYNE7 (1)
ARGB_SYNE7 (1)
ARGC_SYNE7 (1)
ARLY_SYNE7 (1)
AROA_SYNE7 (1)
AROC_SYNE7 (1)
AROK_SYNE7 (1)
ASSY_SYNE7 (1)
ATCL_SYNE7 (1)
ATCS_SYNE7 (1)
ATP6_SYNE7 (1)
ATPA_SYNE7 (1)
ATPB_SYNE7 (1)
ATPD_SYNE7 (1)
ATPE_SYNE7 (1)
ATPF_SYNE7 (1)
ATPG_SYNE7 (1)
ATPL_SYNE7 (1)
ATPX_SYNE7 (1)
ATSY_SYNE7 (1)
BIOB_SYNE7 (1)
CARA_SYNE7 (1)

CHEBI ID

CHEBI:17992 (3)
CHEBI:28842 (3)
CHEBI:116314 (3)
CHEBI:18300 (3)
CHEBI:34900 (3)
CHEBI:27897 (3)
CHEBI:26078 (3)
CHEBI:17351 (3)
CHEBI:30769 (3)
CHEBI:75304 (2)
CHEBI:83717 (2)
CHEBI:73757 (2)
CHEBI:50091 (2)
CHEBI:34159 (2)
CHEBI:84890 (2)
CHEBI:45919 (2)
CHEBI:135821 (2)
CHEBI:69081 (2)
CHEBI:157665 (2)
CHEBI:30813 (2)
CHEBI:85661 (2)
CHEBI:27781 (2)
CHEBI:72959 (2)
CHEBI:73009 (2)
CHEBI:86260 (2)
CHEBI:42504 (2)
CHEBI:18292 (2)
CHEBI:77131 (2)
CHEBI:16893 (2)
CHEBI:17521 (2)

Metabolite Name

4-Aminohippuric acid (2)
21-Deoxycortisol (2)
LysoPC(16:1(9Z)/0:0) (2)
LysoPE(0:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (2)
N-Acetylglutamine (2)
Octadecanamide (2)
Cysteine-S-sulfate (2)
9,10-DHOME (2)
5-Hydroxyindoleacetic acid (2)
Taurine (2)
Proline (2)
Dihydrouracil (2)
Deoxycytidine (2)
Inosine (2)
Hypoxanthine (2)
Nonanedioyl-CoA (1)
PA(a-21:0/PGF2alpha) (1)
PE(14:0/20:4(5Z,8Z,11Z,14Z)-OH(16R)) (1)
Beta-D-Xylopyranosyl-(1->3)-alpha-L-arabinofuranosyl-(1->3)-L-arabinose (1)
PIP(22:3(10Z,13Z,16Z)/PGJ2) (1)
PA(10:0/18:1(9Z)-O(12,13)) (1)
Beta-Alanine, N-(N-(1-carboxy-2-phenylethyl)-L-phenylalanyl)-, (S)- (1)
2-(Furan-2-yl)-7-(3-(4-methoxyphenyl)propyl)-7H-pyrazolo[4,3-e][1,2,4]triazolo[1,5-c]pyrimidin-5-amine (1)
Methyl 5-[(E)-1-(3,7-dimethyl-2-oxo-1,3-benzoxazol-5-yl)-6-methoxy-6-oxohex-1-enyl]-2-methoxy-3-methylbenzoate (1)
7-Chloro-N-[3-(2-nitroimidazol-1-yl)propyl]quinolin-4-amine (1)
Cefozopran (1)
PC(20:4(5Z,8Z,11Z,14Z)-OH(18R)/14:1(9Z)) (1)
PC(DiMe(9,5)/20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)) (1)
Gum arabic (1)
N-[4-[(4-Ethylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]-4-methyl-3-(1H-pyrrolo[2,3-b]pyridin-4-yloxy)benzamide (1)

First Public Date

2025 (113)
2018 (72)
2014 (54)
2024 (42)
2026 (23)
2023 (23)
2020 (22)
2021 (19)
2022 (17)
2015 (14)
2019 (13)
2017 (11)
2016 (3)
2013 (1)

Modelling Approach

Ordinary differential equation model (3)

Lab affiliation

Diabetes and Circadian Rhythms Department, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland (3)
1-Department of protein Science, KTH Royal Institute of Technology, Stockholm, Sweden 2-Science for Life Laboratory, Stockholm, Sweden (1)
Biological Chemistry and Drug Discovery, School of Life Sciences, University od Dundee, Dundee (1)
Department of Biochemistry, Albert Einstein College of Medicine (1)
Henan agricultural university, China (1)
Ichan School of Medicine at Mount Sinai (1)
Reader, School of Biological Science, University of Edinburgh (1)
Research Group of Plant Proteomics, Max Planck Institute of Molecula Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany (1)
Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München (1)
University of Vienna (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (251)
RNA-seq of coding RNA (45)
ChIP-seq (11)
Unknown experiment type (4)
Animal - One-color microarray (3)
ChIP-chip by tiling array (2)
Transcription profiling by tiling array (2)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of non coding RNA (2)
Plant - High-throughput sequencing (1)
Other (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2015 (69)
2011 (57)
2013 (53)
2012 (53)
2014 (51)
2022 (50)
2010 (47)
2019 (46)
2020 (45)
2008 (44)
2024 (41)
2017 (41)
2025 (39)
2016 (39)
2023 (36)
2021 (36)
2018 (32)
2009 (31)
2007 (18)
2026 (6)
2006 (5)
2005 (5)
2002 (3)
2004 (2)
2000 (1)

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Angiopoietin-like 4 governs diurnal lipoprotein lipase activity in brown adipose tissue.

OBJECTIVE: Brown adipose tissue (BAT) burns fatty acids (FAs) to produce heat, and shows diurnal oscillation in glucose and triglyceride (TG)-derived FA-uptake, peaking around wakening. Here we aimed to gain insight in the diurnal regulation of metabolic BAT activity.

2023-11-15 | MTBLS4082 | MetaboLights

Diurnal Dynamics Shape Plant Defense Responses: Temporal Variations in Disease Progression and Metabolic Reprogramming in Brassica oleracea

Plants synchronize their immune responses with the circadian cycle, yet the impact of diurnal timing on disease resistance remains poorly understood in crop species. In this study, we investigated how diurnal variation modulates defense responses in Brassica oleracea against Xanthomonas campestris p...

2025-08-22 | MTBLS7854 | MetaboLights

Transcriptome Phase Distribution Analysis Reveals Diurnal Regulated Biological Processes and Key Pathways in Rice Flag Leaves and Seedling Leaves

Plant diurnal oscillation is a 24-hour period based variation. The correlation between diurnal genes and biological pathways was widely revealed by microarray analysis in different species. Rice (Oryza sativa) is the major food staple for about half of the world's population. The rice flag leaf is e...

ORGANISM(S): Oryza sativa

2011-03-24 | E-GEOD-28124 | biostudies-arrayexpress

Transcription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves

How do the transcript levels of leaf-expressed genes change in a normal day-night cycle? The interest is in genes that are regulated by the circadian clock and the diurnal component (i.e. light, metabolite changes). Plants were grown on soil in a 12/12 h light/dark rythm at 20Â°C day and night. 5 we...

ORGANISM(S): Arabidopsis thaliana

2007-06-28 | E-GEOD-3416 | biostudies-arrayexpress

Diurnal expression data from developing barley caryopses

Caryopses of barley (Hordeum vulgare), like all other cereal seeds, are complex sink organs optimized for storage starch accumulation and embryo development. Their development from early stages after pollination to late stages of seed ripening has been studied in great detail. However, information o...

ORGANISM(S): Hordeum vulgare

2010-04-07 | E-GEOD-20034 | biostudies-arrayexpress

Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [HiC]

PRJNA914054 | ENA

The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis.

Not available

S-EPMC3485221 | biostudies-literature

Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [ChIP-Seq]

PRJNA601441 | ENA

Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [RNA-Seq]

PRJNA601442 | ENA

Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [BiSulfite-seq]